Wall clock time and date at job start Wed Apr 1 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.21284 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.46932 * 120.63252 * 359.71597 * 10 8 7 12 12 C 1.53627 * 108.54225 * 126.37042 * 11 10 8 13 13 C 1.53040 * 109.24416 * 54.85665 * 12 11 10 14 14 O 1.42910 * 109.44800 * 58.52307 * 13 12 11 15 15 C 1.52998 * 109.45855 * 178.48601 * 13 12 11 16 16 N 1.46494 * 109.47422 * 305.06971 * 15 13 12 17 17 C 1.36940 * 119.99986 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99678 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46832 * 89.99915 * 21 19 17 23 23 H 1.48499 * 109.47046 * 210.00093 * 21 19 17 24 24 H 1.48503 * 109.47069 * 330.00056 * 21 19 17 25 25 C 1.53044 * 109.53741 * 298.51092 * 13 12 11 26 26 C 1.46935 * 120.63200 * 179.97438 * 10 8 7 27 27 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 28 28 C 1.31890 * 121.72233 * 359.70023 * 27 6 5 29 29 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 32 32 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 34 34 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 37 37 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 38 38 H 1.09003 * 109.58245 * 246.20282 * 11 10 8 39 39 H 1.08993 * 109.58201 * 6.62779 * 11 10 8 40 40 H 1.09002 * 109.63245 * 294.86271 * 12 11 10 41 41 H 1.09003 * 109.42574 * 174.72577 * 12 11 10 42 42 H 0.96705 * 113.99638 * 59.93570 * 14 13 12 43 43 H 1.09004 * 109.46837 * 65.07579 * 15 13 12 44 44 H 1.08997 * 109.46661 * 185.06641 * 15 13 12 45 45 H 0.97003 * 120.00086 * 0.02562 * 16 15 13 46 46 H 0.97001 * 120.00017 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.49673 * 301.40873 * 25 13 12 48 48 H 1.09002 * 109.49390 * 181.31242 * 25 13 12 49 49 H 1.09002 * 109.58095 * 353.37090 * 26 10 8 50 50 H 1.08998 * 109.58727 * 113.79301 * 26 10 8 51 51 H 1.08003 * 119.61630 * 180.31786 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1347 4.4406 -1.4769 10 7 5.3222 6.6312 -1.1802 11 6 4.7960 7.8706 -0.5922 12 6 5.9173 8.5432 0.2144 13 6 7.1368 8.7444 -0.6880 14 8 6.7695 9.5462 -1.8126 15 6 8.2434 9.4482 0.1000 16 7 7.7223 10.6945 0.6668 17 6 8.5379 11.4992 1.4169 18 1 9.5651 11.2147 1.5910 19 6 8.0440 12.6798 1.9544 20 7 6.7917 13.0257 1.7436 21 14 9.1563 13.7771 2.9783 22 1 9.8370 14.7559 2.0929 23 1 8.3431 14.5035 3.9864 24 1 10.1731 12.9442 3.6695 25 6 7.6432 7.3848 -1.1749 26 6 6.5450 6.6981 -1.9923 27 7 2.7045 3.3241 -1.1996 28 6 2.2705 2.0787 -1.1916 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0935 1.5922 2.1423 35 1 2.9203 3.9352 2.0592 36 1 2.6764 6.0389 -0.5961 37 1 3.6599 5.7574 0.8604 38 1 4.4620 8.5386 -1.3862 39 1 3.9601 7.6362 0.0667 40 1 6.1903 7.9111 1.0594 41 1 5.5713 9.5102 0.5795 42 1 6.4385 10.4241 -1.5783 43 1 8.5858 8.7981 0.9051 44 1 9.0770 9.6723 -0.5655 45 1 6.7996 10.9498 0.5108 46 1 6.4467 13.8510 2.1189 47 1 7.9000 6.7637 -0.3169 48 1 8.5257 7.5273 -1.7986 49 1 6.8632 5.6898 -2.2572 50 1 6.3509 7.2722 -2.8982 51 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755152394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:13 Heat of formation + Delta-G solvation = -46.148112 kcal Electronic energy + Delta-G solvation = -30440.674508 eV Core-core repulsion = 26339.826595 eV Total energy + Delta-G solvation = -4100.847912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79876 -39.99535 -38.36916 -35.51864 -35.16332 -34.05152 -32.69822 -32.11535 -31.62689 -30.90203 -30.26932 -28.13695 -26.50247 -24.29508 -23.98034 -23.42794 -23.28713 -21.90906 -21.29162 -20.19321 -18.91845 -17.56876 -17.33263 -16.75935 -16.60284 -15.95564 -15.68298 -15.35083 -15.23258 -14.95544 -14.48305 -14.29140 -14.24603 -14.11516 -13.84485 -13.65425 -13.33035 -13.24175 -13.16989 -12.89024 -12.78372 -12.64111 -12.36824 -12.26974 -12.00875 -11.86324 -11.67484 -11.49194 -11.35072 -11.07239 -11.04557 -10.99836 -10.85751 -10.31246 -10.15426 -9.95987 -9.78225 -9.68392 -9.47751 -9.41908 -8.97355 -8.96914 -8.47711 -7.03481 -5.86493 -3.15323 0.87051 1.12584 2.71388 3.01295 3.38721 3.44529 3.45470 3.61841 4.01390 4.38634 4.43281 4.50937 4.52470 4.56648 4.63252 4.72651 4.86170 4.92697 4.96950 5.03064 5.05859 5.14164 5.17863 5.22091 5.24327 5.37403 5.43700 5.48292 5.49233 5.51185 5.61175 5.63842 5.67153 5.78532 5.84617 5.89549 5.90005 6.00191 6.04376 6.04974 6.14129 6.35516 6.39257 6.49827 6.61337 6.68769 6.70993 7.48043 7.63002 7.88763 8.07795 8.26259 8.32542 9.43598 9.97240 10.31643 11.36260 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.001926 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.483611 B =14536.769280 C =15277.564781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.075 4.075 5 C -0.163 4.163 6 C 0.140 3.860 7 C -0.093 4.093 8 C 0.522 3.478 9 O -0.531 6.531 10 N -0.609 5.609 11 C 0.111 3.889 12 C -0.157 4.157 13 C 0.130 3.870 14 O -0.561 6.561 15 C 0.128 3.872 16 N -0.730 5.730 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.116 4.116 26 C 0.121 3.879 27 N -0.453 5.453 28 C 0.106 3.894 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.382 0.618 43 H 0.025 0.975 44 H 0.029 0.971 45 H 0.381 0.619 46 H 0.256 0.744 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 -22.484 -3.148 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.183 4.183 6 C 0.002 3.998 7 C -0.133 4.133 8 C 0.309 3.691 9 O -0.407 6.407 10 N -0.343 5.343 11 C -0.012 4.012 12 C -0.196 4.196 13 C 0.089 3.911 14 O -0.368 6.368 15 C 0.000 4.000 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.155 4.155 26 C -0.002 4.002 27 N -0.161 5.161 28 C -0.052 4.052 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.216 0.784 46 H 0.066 0.934 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.092 0.908 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.982 -23.068 -4.447 26.372 hybrid contribution 0.055 1.072 1.869 2.155 sum -11.927 -21.996 -2.578 25.154 Atomic orbital electron populations 1.21759 0.94561 1.01850 1.02275 1.20462 0.96193 0.91920 1.03175 1.20913 1.01216 0.97757 0.94367 1.21400 0.96425 0.94160 0.98118 1.21934 1.01589 0.96043 0.98715 1.20559 0.95390 0.95120 0.88719 1.20653 0.96847 0.93621 1.02202 1.20171 0.84938 0.83000 0.81013 1.90701 1.66410 1.33548 1.50023 1.48119 1.27070 1.07356 1.51777 1.21854 0.96423 0.85476 0.97461 1.22618 0.95923 1.02522 0.98502 1.21287 0.93423 0.90539 0.85848 1.86382 1.86761 1.30602 1.33071 1.21331 0.94654 0.89029 0.95006 1.42326 1.12472 1.20895 1.61863 1.19212 0.93905 1.00386 1.23657 0.91165 1.24721 0.96392 0.98358 1.01303 1.69627 1.13591 1.25140 1.49918 0.86176 0.79506 0.80662 0.79750 1.21655 1.21743 1.20784 1.21840 0.98461 0.94354 1.00838 1.21472 0.83539 1.01561 0.93584 1.67443 1.09321 1.08543 1.30763 1.22606 0.94788 0.90457 0.97351 0.92452 0.92222 0.92602 0.90674 0.90898 0.84980 0.84726 0.87062 0.87273 0.90541 0.90139 0.90797 0.88968 0.76895 0.95678 0.95304 0.78443 0.93431 0.90557 0.90080 0.89502 0.90754 0.83114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.41 16 2 C -0.08 -0.48 6.09 -27.88 -0.17 -0.65 16 3 C -0.14 -1.23 5.15 -104.48 -0.54 -1.77 16 4 C -0.08 -0.64 9.86 -39.28 -0.39 -1.03 16 5 C -0.16 -1.56 9.71 -39.44 -0.38 -1.95 16 6 C 0.14 1.66 5.76 -82.59 -0.48 1.19 16 7 C -0.09 -0.98 4.45 -29.03 -0.13 -1.11 16 8 C 0.52 7.29 7.63 -10.99 -0.08 7.21 16 9 O -0.53 -9.34 14.75 5.55 0.08 -9.25 16 10 N -0.61 -8.00 2.97 -172.51 -0.51 -8.51 16 11 C 0.11 1.30 6.13 -3.48 -0.02 1.28 16 12 C -0.16 -2.22 4.89 -26.39 -0.13 -2.35 16 13 C 0.13 2.02 0.71 -90.58 -0.06 1.95 16 14 O -0.56 -9.00 11.70 -35.23 -0.41 -9.41 16 15 C 0.13 2.46 5.43 -4.05 -0.02 2.44 16 16 N -0.73 -17.08 5.07 -59.91 -0.30 -17.38 16 17 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.12 -1.61 5.11 -26.63 -0.14 -1.75 16 26 C 0.12 1.65 6.19 -3.73 -0.02 1.63 16 27 N -0.45 -6.06 9.22 -9.47 -0.09 -6.14 16 28 C 0.11 1.14 10.86 -17.55 -0.19 0.95 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.97 7.95 -52.49 -0.42 0.55 16 36 H 0.11 1.01 7.93 -51.93 -0.41 0.59 16 37 H 0.11 0.88 7.43 -51.93 -0.39 0.50 16 38 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 39 H 0.08 0.74 5.93 -51.93 -0.31 0.44 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.46 6.53 -51.93 -0.34 1.12 16 42 H 0.38 6.06 8.19 45.56 0.37 6.43 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.38 9.01 5.55 -40.82 -0.23 8.78 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.09 1.24 7.01 -51.93 -0.36 0.88 16 50 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 51 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -33.48 406.71 -9.54 -43.02 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.50 Total: 12.21 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.63 Total: -1.41 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.18 Total: -58.08 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.33 Total: -18.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.48 -9.54 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755152394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.126 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds