Wall clock time and date at job start Wed Apr 1 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.21284 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.46932 * 120.63252 * 359.71597 * 10 8 7 12 12 C 1.53627 * 108.54225 * 126.37042 * 11 10 8 13 13 C 1.53040 * 109.24416 * 54.85665 * 12 11 10 14 14 O 1.42910 * 109.44800 * 58.52307 * 13 12 11 15 15 C 1.52998 * 109.45855 * 178.48601 * 13 12 11 16 16 N 1.46494 * 109.47422 * 305.06971 * 15 13 12 17 17 C 1.36940 * 119.99986 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00065 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99678 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46832 * 89.99915 * 21 19 17 23 23 H 1.48499 * 109.47046 * 210.00093 * 21 19 17 24 24 H 1.48503 * 109.47069 * 330.00056 * 21 19 17 25 25 C 1.53044 * 109.53741 * 298.51092 * 13 12 11 26 26 C 1.46935 * 120.63200 * 179.97438 * 10 8 7 27 27 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 28 28 C 1.31890 * 121.72233 * 359.70023 * 27 6 5 29 29 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 32 32 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 34 34 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 37 37 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 38 38 H 1.09003 * 109.58245 * 246.20282 * 11 10 8 39 39 H 1.08993 * 109.58201 * 6.62779 * 11 10 8 40 40 H 1.09002 * 109.63245 * 294.86271 * 12 11 10 41 41 H 1.09003 * 109.42574 * 174.72577 * 12 11 10 42 42 H 0.96705 * 113.99638 * 59.93570 * 14 13 12 43 43 H 1.09004 * 109.46837 * 65.07579 * 15 13 12 44 44 H 1.08997 * 109.46661 * 185.06641 * 15 13 12 45 45 H 0.97003 * 120.00086 * 0.02562 * 16 15 13 46 46 H 0.97001 * 120.00017 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.49673 * 301.40873 * 25 13 12 48 48 H 1.09002 * 109.49390 * 181.31242 * 25 13 12 49 49 H 1.09002 * 109.58095 * 353.37090 * 26 10 8 50 50 H 1.08998 * 109.58727 * 113.79301 * 26 10 8 51 51 H 1.08003 * 119.61630 * 180.31786 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1347 4.4406 -1.4769 10 7 5.3222 6.6312 -1.1802 11 6 4.7960 7.8706 -0.5922 12 6 5.9173 8.5432 0.2144 13 6 7.1368 8.7444 -0.6880 14 8 6.7695 9.5462 -1.8126 15 6 8.2434 9.4482 0.1000 16 7 7.7223 10.6945 0.6668 17 6 8.5379 11.4992 1.4169 18 1 9.5651 11.2147 1.5910 19 6 8.0440 12.6798 1.9544 20 7 6.7917 13.0257 1.7436 21 14 9.1563 13.7771 2.9783 22 1 9.8370 14.7559 2.0929 23 1 8.3431 14.5035 3.9864 24 1 10.1731 12.9442 3.6695 25 6 7.6432 7.3848 -1.1749 26 6 6.5450 6.6981 -1.9923 27 7 2.7045 3.3241 -1.1996 28 6 2.2705 2.0787 -1.1916 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0935 1.5922 2.1423 35 1 2.9203 3.9352 2.0592 36 1 2.6764 6.0389 -0.5961 37 1 3.6599 5.7574 0.8604 38 1 4.4620 8.5386 -1.3862 39 1 3.9601 7.6362 0.0667 40 1 6.1903 7.9111 1.0594 41 1 5.5713 9.5102 0.5795 42 1 6.4385 10.4241 -1.5783 43 1 8.5858 8.7981 0.9051 44 1 9.0770 9.6723 -0.5655 45 1 6.7996 10.9498 0.5108 46 1 6.4467 13.8510 2.1189 47 1 7.9000 6.7637 -0.3169 48 1 8.5257 7.5273 -1.7986 49 1 6.8632 5.6898 -2.2572 50 1 6.3509 7.2722 -2.8982 51 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755152394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:12 Heat of formation + Delta-G solvation = -68.298642 kcal Electronic energy + Delta-G solvation = -30441.635027 eV Core-core repulsion = 26339.826595 eV Total energy + Delta-G solvation = -4101.808431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68344 -40.97417 -39.58304 -36.76254 -35.85754 -35.76708 -33.65783 -33.29910 -32.77407 -31.85795 -31.71214 -29.00744 -27.92062 -25.63863 -24.75514 -24.48448 -24.35262 -23.18637 -22.05801 -21.37747 -20.00290 -19.43153 -18.33834 -17.58487 -17.43954 -17.26321 -16.71548 -16.49180 -16.32151 -16.18024 -15.79727 -15.63362 -15.20112 -14.97422 -14.80281 -14.69602 -14.60217 -14.38542 -14.18917 -13.97228 -13.86621 -13.59891 -13.38646 -13.18337 -13.11543 -12.94056 -12.78669 -12.74267 -12.64374 -12.27337 -12.19457 -12.15726 -12.06310 -11.96074 -11.82456 -11.29434 -10.96595 -10.91155 -10.69404 -10.65576 -10.24435 -9.69694 -9.59458 -9.00768 -7.95938 -5.23773 0.15359 0.42876 1.48877 1.49659 1.57561 1.67160 2.00804 2.55607 2.86125 3.25568 3.30378 3.41922 3.58609 3.66860 3.77385 3.82186 3.86903 3.92879 4.04473 4.07103 4.10866 4.25017 4.32008 4.36882 4.45038 4.47216 4.51076 4.52031 4.59039 4.65610 4.74543 4.78125 4.79399 4.84658 4.90397 4.94999 5.01068 5.07134 5.09372 5.09733 5.20452 5.21976 5.34454 5.37731 5.44178 5.50358 5.56376 5.83171 6.26332 6.44489 6.77165 7.14097 7.21299 7.34650 8.05153 8.31554 9.26507 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.001926 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.483611 B =14536.769280 C =15277.564781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.080 4.080 5 C -0.164 4.164 6 C 0.112 3.888 7 C -0.088 4.088 8 C 0.518 3.482 9 O -0.572 6.572 10 N -0.608 5.608 11 C 0.116 3.884 12 C -0.150 4.150 13 C 0.137 3.863 14 O -0.563 6.563 15 C 0.128 3.872 16 N -0.734 5.734 17 C -0.248 4.248 18 H 0.069 0.931 19 C -0.066 4.066 20 N -0.961 5.961 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.274 1.274 25 C -0.110 4.110 26 C 0.125 3.875 27 N -0.492 5.492 28 C 0.082 3.918 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.382 0.618 43 H 0.026 0.974 44 H 0.018 0.982 45 H 0.378 0.622 46 H 0.252 0.748 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -23.527 -1.799 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.184 4.184 6 C -0.026 4.026 7 C -0.128 4.128 8 C 0.307 3.693 9 O -0.452 6.452 10 N -0.341 5.341 11 C -0.006 4.006 12 C -0.188 4.188 13 C 0.096 3.904 14 O -0.371 6.371 15 C 0.001 3.999 16 N -0.379 5.379 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.259 4.259 20 N -0.611 5.611 21 Si 0.797 3.203 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.199 1.199 25 C -0.148 4.148 26 C 0.002 3.998 27 N -0.201 5.201 28 C -0.075 4.075 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.231 0.769 43 H 0.044 0.956 44 H 0.036 0.964 45 H 0.213 0.787 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.680 -24.123 -3.105 27.429 hybrid contribution 0.309 1.322 1.411 1.958 sum -12.370 -22.800 -1.694 25.995 Atomic orbital electron populations 1.21734 0.93890 1.02630 1.01884 1.20520 0.96638 0.90304 1.04060 1.21201 0.99981 0.98846 0.93839 1.21809 0.95608 0.94011 0.99174 1.22244 1.00754 0.96590 0.98808 1.20843 0.96622 0.95798 0.89298 1.20735 0.95217 0.93812 1.03041 1.20797 0.85573 0.82298 0.80631 1.90680 1.67734 1.34961 1.51776 1.48185 1.26754 1.07775 1.51384 1.21914 0.96265 0.84693 0.97714 1.22501 0.95933 1.01937 0.98448 1.21234 0.92965 0.90590 0.85616 1.86387 1.86680 1.30702 1.33285 1.21439 0.95679 0.87780 0.95007 1.42404 1.12134 1.21811 1.61595 1.19537 0.94252 1.00802 1.23408 0.91278 1.25426 0.97710 0.99801 1.02925 1.69751 1.14901 1.25404 1.51079 0.85233 0.77963 0.78885 0.78193 1.21664 1.22013 1.19890 1.21792 0.98654 0.93281 1.01091 1.21347 0.83932 1.00910 0.93576 1.67370 1.10627 1.09870 1.32200 1.22877 0.95598 0.90328 0.98711 0.93211 0.90855 0.92636 0.90232 0.89581 0.82194 0.82274 0.85577 0.84417 0.90364 0.86908 0.90717 0.90551 0.76887 0.95573 0.96369 0.78728 0.93874 0.90079 0.89724 0.90266 0.91130 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 71.98 0.71 -0.55 16 2 C -0.08 -0.79 6.09 29.85 0.18 -0.61 16 3 C -0.14 -2.23 5.15 -19.77 -0.10 -2.34 16 4 C -0.08 -1.21 9.86 22.47 0.22 -0.99 16 5 C -0.16 -2.82 9.71 22.36 0.22 -2.60 16 6 C 0.11 2.55 5.76 42.55 0.25 2.79 16 7 C -0.09 -1.70 4.45 29.10 0.13 -1.57 16 8 C 0.52 14.00 7.63 87.66 0.67 14.67 16 9 O -0.57 -20.27 14.75 -3.04 -0.04 -20.32 16 10 N -0.61 -15.21 2.97 -818.11 -2.43 -17.64 16 11 C 0.12 2.50 6.13 86.51 0.53 3.03 16 12 C -0.15 -4.03 4.89 30.82 0.15 -3.88 16 13 C 0.14 4.15 0.71 -10.77 -0.01 4.14 16 14 O -0.56 -17.77 11.70 -148.98 -1.74 -19.51 16 15 C 0.13 4.89 5.43 86.38 0.47 5.36 16 16 N -0.73 -34.32 5.07 -343.47 -1.74 -36.06 16 17 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 18 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 20 N -0.96 -55.13 13.06 21.65 0.28 -54.85 16 21 Si 0.97 44.63 29.55 68.60 2.03 46.65 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C -0.11 -2.95 5.11 30.66 0.16 -2.79 16 26 C 0.13 3.36 6.19 86.35 0.53 3.89 16 27 N -0.49 -13.21 9.22 -183.89 -1.70 -14.91 16 28 C 0.08 1.77 10.86 84.67 0.92 2.69 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.16 1.79 7.95 -2.91 -0.02 1.77 16 36 H 0.13 2.01 7.93 -2.39 -0.02 1.99 16 37 H 0.14 1.78 7.43 -2.39 -0.02 1.76 16 38 H 0.08 1.71 7.81 -2.39 -0.02 1.69 16 39 H 0.11 1.73 5.93 -2.39 -0.01 1.71 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.35 6.53 -2.39 -0.02 2.34 16 42 H 0.38 12.06 8.19 -74.05 -0.61 11.45 16 43 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.38 17.96 5.55 -92.71 -0.51 17.45 16 46 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.08 2.28 7.01 -2.39 -0.02 2.26 16 50 H 0.07 1.95 7.81 -2.39 -0.02 1.93 16 51 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -72.28 406.71 0.81 -71.47 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.18 Total: 39.49 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.33 Total: 5.67 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.58 Total: -123.46 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.79 Total: -39.83 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -72.28 0.81 -71.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755152394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.171 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds