Wall clock time and date at job start Wed Apr 1 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38232 * 120.00062 * 269.72409 * 4 3 2 6 6 C 1.38241 * 119.99851 * 179.77134 * 5 4 3 7 7 C 1.38230 * 119.99713 * 0.50789 * 6 5 4 8 8 C 1.50704 * 119.99764 * 179.72792 * 7 6 5 9 9 C 1.52998 * 109.47096 * 240.01715 * 8 7 6 10 10 C 1.53001 * 109.47119 * 0.02562 * 8 7 6 11 11 C 1.53005 * 109.47276 * 120.01846 * 8 7 6 12 12 C 1.38233 * 120.00181 * 359.74526 * 7 6 5 13 13 C 1.38228 * 120.00039 * 359.97438 * 12 7 6 14 14 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 15 15 O 1.21593 * 120.00167 * 179.97438 * 14 2 1 16 16 N 1.34780 * 120.00532 * 359.97438 * 14 2 1 17 17 C 1.46496 * 120.00367 * 179.97438 * 16 14 2 18 18 C 1.50701 * 109.47414 * 179.97438 * 17 16 14 19 19 O 1.21297 * 119.99651 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00287 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00135 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99856 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99874 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00193 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99834 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47139 * 60.00190 * 25 23 21 27 27 H 1.48500 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46998 * 300.00599 * 25 23 21 29 29 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 32 32 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 33 33 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 34 34 H 1.07999 * 120.00321 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.99477 * 180.23160 * 6 5 4 36 36 H 1.09007 * 109.46974 * 59.99757 * 9 8 7 37 37 H 1.08997 * 109.47494 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47301 * 300.00223 * 9 8 7 39 39 H 1.09003 * 109.46937 * 59.99847 * 10 8 7 40 40 H 1.08994 * 109.47018 * 180.02562 * 10 8 7 41 41 H 1.09007 * 109.46811 * 300.00158 * 10 8 7 42 42 H 1.08997 * 109.46880 * 59.99924 * 11 8 7 43 43 H 1.08997 * 109.46720 * 179.97438 * 11 8 7 44 44 H 1.08998 * 109.46746 * 300.00048 * 11 8 7 45 45 H 1.07999 * 119.99981 * 179.97438 * 12 7 6 46 46 H 1.08006 * 119.99980 * 179.97438 * 13 12 7 47 47 H 0.97000 * 119.99501 * 0.02562 * 16 14 2 48 48 H 1.09004 * 109.47298 * 300.00557 * 17 16 14 49 49 H 1.09000 * 109.47160 * 60.00094 * 17 16 14 50 50 H 0.96998 * 119.99994 * 0.02562 * 20 18 17 51 51 H 0.97000 * 119.99928 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5299 2.5064 2.0706 6 6 1.7581 2.9015 3.3756 7 6 2.9100 2.5024 4.0271 8 6 3.1617 2.9381 5.4476 9 6 4.4602 3.7447 5.5112 10 6 1.9975 3.8067 5.9285 11 6 3.2827 1.7052 6.3455 12 6 3.8313 1.7039 3.3755 13 6 3.6004 1.3041 2.0726 14 6 2.1388 -1.1672 -0.0005 15 8 3.3548 -1.1673 -0.0010 16 7 1.4650 -2.3344 -0.0005 17 6 2.1974 -3.6032 -0.0017 18 6 1.2181 -4.7486 -0.0008 19 8 0.0256 -4.5269 0.0002 20 7 1.6673 -6.0193 -0.0011 21 6 0.7764 -7.0613 -0.0008 22 1 -0.2854 -6.8639 -0.0008 23 6 1.2395 -8.3714 -0.0016 24 7 2.5315 -8.6115 -0.0022 25 14 0.0256 -9.7911 -0.0020 26 1 -0.8284 -9.7118 -1.2142 27 1 0.7681 -11.0772 -0.0023 28 1 -0.8278 -9.7130 1.2108 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.1500 1.1383 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 0.6323 2.8223 1.5599 35 1 1.0384 3.5256 3.8844 36 1 4.3741 4.6231 4.8715 37 1 4.6421 4.0603 6.5386 38 1 5.2895 3.1258 5.1687 39 1 1.0725 3.2319 5.8832 40 1 2.1798 4.1222 6.9557 41 1 1.9112 4.6851 5.2888 42 1 4.1120 1.0863 6.0030 43 1 3.4651 2.0204 7.3728 44 1 2.3576 1.1306 6.3002 45 1 4.7315 1.3925 3.8845 46 1 4.3205 0.6806 1.5634 47 1 0.4949 -2.3344 -0.0005 48 1 2.8235 -3.6605 -0.8921 49 1 2.8247 -3.6613 0.8878 50 1 2.6209 -6.1966 -0.0015 51 1 2.8548 -9.5261 -0.0024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576303667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:18 Heat of formation + Delta-G solvation = -67.958712 kcal Electronic energy + Delta-G solvation = -30047.784138 eV Core-core repulsion = 25945.990447 eV Total energy + Delta-G solvation = -4101.793691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.50054 -40.71288 -40.02633 -37.75883 -36.25639 -36.24894 -35.30367 -33.38432 -31.98800 -31.93367 -29.30356 -28.28916 -28.12512 -28.03624 -26.89509 -25.75153 -23.22191 -22.96323 -21.40267 -21.04854 -20.12704 -20.04179 -19.21090 -17.79006 -17.53505 -17.31540 -16.85133 -16.54283 -16.17924 -16.08714 -15.96556 -15.67173 -15.22996 -15.11300 -14.97147 -14.83145 -14.55122 -14.29596 -14.14916 -13.97711 -13.60673 -13.54070 -13.51290 -13.34970 -13.08609 -12.89887 -12.87641 -12.68016 -12.60314 -12.55544 -12.47481 -12.15591 -12.13559 -11.83544 -11.56787 -11.54051 -11.37736 -11.28815 -10.56842 -10.28437 -10.10299 -9.77084 -9.63059 -9.42326 -8.51179 -6.01688 0.36140 0.55080 1.37789 1.42123 1.52907 1.64638 1.88726 2.11041 2.28004 2.78612 3.01960 3.15756 3.18988 3.66191 3.80703 3.98337 4.02777 4.11556 4.17769 4.19665 4.26262 4.37779 4.39264 4.42203 4.43752 4.56763 4.60972 4.69166 4.75891 4.77324 4.84381 4.88738 4.88930 4.99865 5.02447 5.06453 5.16433 5.20239 5.25144 5.31742 5.37658 5.38406 5.41599 5.47718 5.61184 5.72231 5.77390 5.89705 5.91751 6.15443 6.47128 6.90219 7.02518 7.41086 7.51443 7.93181 8.65508 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.001992 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.836173 B =14051.413122 C =14899.102262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.622 5.622 3 C 0.174 3.826 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.032 4.032 9 C -0.136 4.136 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.132 4.132 13 C -0.111 4.111 14 C 0.702 3.298 15 O -0.625 6.625 16 N -0.726 5.726 17 C 0.142 3.858 18 C 0.434 3.566 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.338 4.338 22 H 0.087 0.913 23 C -0.012 4.012 24 N -0.916 5.916 25 Si 0.998 3.002 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.118 0.882 46 H 0.104 0.896 47 H 0.409 0.591 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.399 0.601 51 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 27.199 7.970 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.358 5.358 3 C 0.051 3.949 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.072 4.072 8 C -0.032 4.032 9 C -0.193 4.193 10 C -0.198 4.198 11 C -0.196 4.196 12 C -0.150 4.150 13 C -0.130 4.130 14 C 0.403 3.597 15 O -0.506 6.506 16 N -0.386 5.386 17 C 0.013 3.987 18 C 0.221 3.779 19 O -0.512 6.512 20 N -0.194 5.194 21 C -0.467 4.467 22 H 0.105 0.895 23 C -0.213 4.213 24 N -0.556 5.556 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.136 0.864 46 H 0.122 0.878 47 H 0.248 0.752 48 H 0.109 0.891 49 H 0.105 0.895 50 H 0.233 0.767 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.233 27.132 7.945 28.272 hybrid contribution -0.013 -1.385 -0.084 1.387 sum -0.247 25.747 7.861 26.922 Atomic orbital electron populations 1.21974 0.77697 1.04552 1.02622 1.47063 1.07554 1.03755 1.77453 1.20365 0.98118 0.83653 0.92728 1.20347 0.95240 0.99151 0.97572 1.21294 0.98828 0.96861 0.94912 1.21430 0.97516 1.01043 0.94895 1.20072 0.94418 0.96679 0.95999 1.19571 0.97251 0.95965 0.90364 1.21864 0.95445 0.99498 1.02466 1.21940 0.96872 0.99248 1.01709 1.21895 1.01392 0.96711 0.99635 1.21063 1.00057 0.99242 0.94629 1.21187 0.97806 0.98704 0.95290 1.15967 0.84970 0.80988 0.77788 1.90851 1.12879 1.86903 1.59978 1.44884 1.10980 1.03438 1.79259 1.20558 0.92916 0.81447 1.03773 1.20378 0.89413 0.84552 0.83581 1.90457 1.18005 1.84655 1.58061 1.41832 1.09887 1.04293 1.63394 1.19707 0.91079 0.85387 1.50500 0.89489 1.26161 0.98516 1.00812 0.95765 1.69679 1.13832 1.22923 1.49170 0.84908 0.77497 0.76327 0.79132 1.19399 1.19638 1.19471 0.92322 0.87195 0.91801 0.90822 0.86076 0.83568 0.83694 0.92497 0.91101 0.93106 0.92359 0.91368 0.91631 0.93297 0.90934 0.93423 0.86373 0.87785 0.75155 0.89104 0.89532 0.76733 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.25 127.77 1.31 2.63 16 2 N -0.62 -15.38 2.86 -869.28 -2.48 -17.86 16 3 C 0.17 3.60 5.58 85.63 0.48 4.08 16 4 C -0.12 -2.68 5.46 -19.87 -0.11 -2.79 16 5 C -0.10 -1.74 9.70 22.27 0.22 -1.52 16 6 C -0.13 -2.24 8.98 22.27 0.20 -2.04 16 7 C -0.07 -1.36 4.76 -19.87 -0.09 -1.46 16 8 C -0.03 -0.46 0.85 -52.93 -0.05 -0.51 16 9 C -0.14 -1.78 8.29 71.98 0.60 -1.18 16 10 C -0.14 -1.57 7.13 71.98 0.51 -1.06 16 11 C -0.14 -2.18 8.29 71.98 0.60 -1.58 16 12 C -0.13 -3.03 8.71 22.27 0.19 -2.84 16 13 C -0.11 -2.90 9.70 22.27 0.22 -2.68 16 14 C 0.70 23.66 8.28 179.06 1.48 25.14 16 15 O -0.62 -24.72 15.45 -4.01 -0.06 -24.79 16 16 N -0.73 -25.59 5.39 -482.29 -2.60 -28.19 16 17 C 0.14 5.48 6.15 85.63 0.53 6.01 16 18 C 0.43 20.52 7.85 87.66 0.69 21.20 16 19 O -0.62 -32.63 15.24 -3.08 -0.05 -32.68 16 20 N -0.56 -28.56 5.29 -306.99 -1.62 -30.19 16 21 C -0.34 -18.75 9.68 84.04 0.81 -17.93 16 22 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 25 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.15 7.89 -2.38 -0.02 1.13 16 31 H 0.06 1.29 6.36 -2.39 -0.02 1.27 16 32 H 0.07 1.81 7.36 -2.39 -0.02 1.79 16 33 H 0.12 1.55 7.84 -2.39 -0.02 1.53 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.80 5.90 -2.91 -0.02 1.78 16 36 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.73 7.39 -2.39 -0.02 0.71 16 39 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.65 7.51 -2.38 -0.02 0.63 16 42 H 0.05 0.84 7.39 -2.39 -0.02 0.82 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.12 2.56 7.10 -2.91 -0.02 2.54 16 46 H 0.10 3.16 7.58 -2.91 -0.02 3.13 16 47 H 0.41 14.06 5.17 -92.71 -0.48 13.58 16 48 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 49 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 50 H 0.40 19.66 7.90 -92.71 -0.73 18.92 16 51 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -69.71 414.87 3.28 -66.43 By element: Atomic # 1 Polarization: 49.11 SS G_CDS: -0.26 Total: 48.84 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 8.05 Total: 23.32 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.42 Total: -125.10 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -0.11 Total: -57.46 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.71 3.28 -66.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576303667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.532 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds