Wall clock time and date at job start Wed Apr 1 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47069 * 239.99944 * 2 1 3 5 5 C 1.50700 * 109.47192 * 185.00076 * 4 2 1 6 6 C 1.38016 * 119.51466 * 124.72825 * 5 4 2 7 7 C 1.39928 * 119.13198 * 179.73722 * 6 5 4 8 8 C 1.48164 * 120.89167 * 180.26339 * 7 6 5 9 9 O 1.21521 * 120.00064 * 0.26607 * 8 7 6 10 10 N 1.34779 * 120.00290 * 180.26860 * 8 7 6 11 11 C 1.46496 * 120.00066 * 179.97438 * 10 8 7 12 12 C 1.53029 * 109.46213 * 275.02532 * 11 10 8 13 13 C 1.53196 * 109.31300 * 178.60156 * 12 11 10 14 14 N 1.46923 * 108.76628 * 54.65830 * 13 12 11 15 15 C 1.36935 * 120.63387 * 126.40419 * 14 13 12 16 16 H 1.08003 * 119.99763 * 331.82653 * 15 14 13 17 17 C 1.38808 * 120.00126 * 151.82898 * 15 14 13 18 18 N 1.31621 * 119.99961 * 343.06996 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 163.06904 * 17 15 14 20 20 H 1.48500 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47203 * 120.00068 * 19 17 15 22 22 H 1.48506 * 109.47151 * 240.00013 * 19 17 15 23 23 C 1.46931 * 118.73648 * 306.38799 * 14 13 12 24 24 C 1.53045 * 109.45813 * 154.97185 * 11 10 8 25 25 C 1.39609 * 118.21675 * 0.51854 * 7 6 5 26 26 C 1.38853 * 118.94942 * 359.74502 * 25 7 6 27 27 O 1.35678 * 119.62301 * 179.97438 * 26 25 7 28 28 N 1.31878 * 119.51253 * 305.00150 * 5 4 2 29 29 H 1.09006 * 109.47338 * 60.00057 * 1 2 3 30 30 H 1.09001 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47249 * 300.00584 * 1 2 3 32 32 H 1.08997 * 109.47235 * 120.00083 * 2 1 3 33 33 H 1.09006 * 109.46902 * 300.00210 * 3 2 1 34 34 H 1.08998 * 109.47174 * 59.99701 * 3 2 1 35 35 H 1.08995 * 109.47497 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47068 * 304.99799 * 4 2 1 37 37 H 1.08998 * 109.46779 * 64.99965 * 4 2 1 38 38 H 1.08006 * 120.43321 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99654 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.45846 * 35.00258 * 11 10 8 41 41 H 1.09004 * 109.50079 * 298.56938 * 12 11 10 42 42 H 1.09003 * 109.49624 * 58.66918 * 12 11 10 43 43 H 1.09000 * 109.59786 * 294.87185 * 13 12 11 44 44 H 1.09000 * 109.69959 * 174.50861 * 13 12 11 45 45 H 0.96998 * 119.99697 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.57998 * 293.81546 * 23 14 13 47 47 H 1.09003 * 109.70124 * 173.46747 * 23 14 13 48 48 H 1.08999 * 109.49590 * 301.33901 * 24 11 10 49 49 H 1.08995 * 109.49851 * 61.39937 * 24 11 10 50 50 H 1.08000 * 120.52595 * 179.71324 * 25 7 6 51 51 H 0.96704 * 114.00031 * 270.01594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.8294 -1.1889 6 6 4.1391 -2.0689 -1.2971 7 6 5.5345 -2.1595 -1.2456 8 6 6.2167 -3.4695 -1.3636 9 8 5.5636 -4.4835 -1.5121 10 7 7.5616 -3.5366 -1.3061 11 6 8.2360 -4.8319 -1.4222 12 6 8.2896 -5.5038 -0.0483 13 6 8.9641 -6.8729 -0.1799 14 7 10.2766 -6.6941 -0.8154 15 6 11.4106 -7.1842 -0.2245 16 1 11.4584 -7.2872 0.8495 17 6 12.4984 -7.5486 -1.0059 18 7 12.3443 -7.7443 -2.2983 19 14 14.1811 -7.7613 -0.2232 20 1 14.0884 -7.4847 1.2329 21 1 14.6527 -9.1536 -0.4340 22 1 15.1402 -6.8141 -0.8463 23 6 10.3494 -5.9797 -2.0972 24 6 9.6591 -4.6208 -1.9442 25 6 6.2665 -0.9831 -1.0746 26 6 5.5859 0.2226 -0.9686 27 8 6.2836 1.3742 -0.8016 28 7 4.2658 0.2611 -1.0281 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.6053 -1.7198 -1.2951 37 1 1.7515 -0.1583 -2.1369 38 1 3.5376 -2.9570 -1.4237 39 1 8.0829 -2.7272 -1.1879 40 1 7.6852 -5.4672 -2.1159 41 1 8.8615 -4.8808 0.6393 42 1 7.2767 -5.6327 0.3334 43 1 8.3464 -7.5272 -0.7951 44 1 9.0936 -7.3152 0.8079 45 1 13.1045 -7.9986 -2.8444 46 1 9.8447 -6.5612 -2.8687 47 1 11.3926 -5.8304 -2.3760 48 1 9.6211 -4.1210 -2.9122 49 1 10.2178 -4.0057 -1.2389 50 1 7.3450 -1.0103 -1.0251 51 1 6.4434 1.6067 0.1234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611478241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:28 Heat of formation + Delta-G solvation = -31.066740 kcal Electronic energy + Delta-G solvation = -30320.967462 eV Core-core repulsion = 26220.773527 eV Total energy + Delta-G solvation = -4100.193935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20986 -39.64562 -37.89827 -37.41963 -36.15397 -34.61510 -33.13874 -32.00937 -31.27935 -30.18360 -29.43125 -27.41954 -27.30859 -25.59911 -24.19073 -23.19964 -22.34255 -21.93317 -20.77940 -20.17659 -19.52555 -18.82442 -17.50549 -17.31249 -16.73336 -16.07116 -15.91967 -15.68904 -15.12923 -15.00078 -14.74809 -14.61554 -14.22463 -14.06383 -13.77572 -13.60137 -13.33879 -13.05215 -12.78095 -12.69586 -12.53338 -12.49378 -12.35318 -12.28914 -11.90952 -11.53840 -11.48647 -11.18827 -11.12718 -11.00125 -10.94526 -10.77494 -10.55607 -10.36907 -10.21997 -10.14465 -10.07971 -9.81926 -9.65044 -9.46871 -9.16999 -8.86447 -8.50983 -6.73354 -5.83785 -3.26278 0.37389 0.59244 2.64204 3.00990 3.15703 3.34057 3.42265 3.44285 3.46890 4.02370 4.31695 4.45811 4.54471 4.59421 4.60581 4.70888 4.78110 4.99253 5.08693 5.23072 5.28729 5.31198 5.36276 5.41047 5.43569 5.48221 5.50709 5.52480 5.65401 5.71175 5.77355 5.78752 5.85409 6.00010 6.01064 6.06932 6.15590 6.23873 6.38711 6.45074 6.47288 6.50839 6.72739 6.78961 6.92970 7.07996 7.25628 7.45818 7.49698 7.59087 7.76071 8.12691 8.40154 9.16320 9.79337 10.36161 11.25196 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.001943 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.189083 B =14406.128509 C =14975.678947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.159 4.159 4 C -0.067 4.067 5 C 0.153 3.847 6 C -0.124 4.124 7 C -0.062 4.062 8 C 0.553 3.447 9 O -0.527 6.527 10 N -0.713 5.713 11 C 0.150 3.850 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.174 3.826 24 C -0.147 4.147 25 C -0.162 4.162 26 C 0.310 3.690 27 O -0.479 6.479 28 N -0.479 5.479 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.396 0.604 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.022 0.978 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.145 0.855 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 18.629 3.647 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.216 4.216 4 C -0.105 4.105 5 C 0.015 3.985 6 C -0.145 4.145 7 C -0.073 4.073 8 C 0.338 3.662 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.047 3.953 12 C -0.179 4.179 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.187 4.187 25 C -0.184 4.184 26 C 0.131 3.869 27 O -0.286 6.286 28 N -0.199 5.199 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.231 0.769 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.111 0.889 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.163 0.837 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -19.491 18.637 2.894 27.122 hybrid contribution 1.700 -0.353 0.776 1.902 sum -17.791 18.284 3.670 25.774 Atomic orbital electron populations 1.21859 0.94995 1.01740 1.01926 1.20999 0.95433 0.97268 0.96938 1.22166 1.04455 0.94455 1.00521 1.20729 0.87614 1.02298 0.99863 1.20970 0.96421 0.86977 0.94116 1.22145 0.93917 0.99458 0.98992 1.20424 0.94347 0.93607 0.98940 1.18108 0.82774 0.87790 0.77542 1.90795 1.65171 1.35648 1.48746 1.46306 1.05801 1.11555 1.72595 1.21150 0.93426 0.82488 0.98220 1.22386 0.99959 0.99619 0.95980 1.20873 0.87490 0.92395 0.97198 1.44100 1.01529 1.63096 1.22799 1.19225 0.91232 1.36800 0.90925 0.91572 1.25065 0.99448 0.99234 0.95940 1.70032 1.29694 1.50026 1.04958 0.86225 0.84418 0.77381 0.78757 1.20258 1.21690 1.21561 1.20744 1.00654 0.86544 0.87298 1.22556 0.93884 1.02588 0.99691 1.22314 1.01845 0.91540 1.02717 1.19018 0.86651 0.85086 0.96121 1.84816 1.72330 1.39209 1.32211 1.66868 1.06936 1.32662 1.13482 0.92573 0.92649 0.92587 0.91448 0.93184 0.93910 0.89033 0.89653 0.89493 0.83044 0.76916 0.89696 0.92227 0.92669 0.96107 0.92443 0.93610 0.96013 0.88923 0.92613 0.92074 0.83738 0.74073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.15 0.34 -0.52 16 2 C -0.09 -0.62 2.91 -90.62 -0.26 -0.88 16 3 C -0.16 -1.23 8.81 37.16 0.33 -0.90 16 4 C -0.07 -0.49 5.13 -27.88 -0.14 -0.63 16 5 C 0.15 1.46 6.17 -82.65 -0.51 0.95 16 6 C -0.12 -1.31 9.27 -39.03 -0.36 -1.67 16 7 C -0.06 -0.71 5.91 -104.68 -0.62 -1.33 16 8 C 0.55 7.85 7.76 -12.18 -0.09 7.76 16 9 O -0.53 -9.30 16.11 5.35 0.09 -9.21 16 10 N -0.71 -9.58 5.03 -54.61 -0.27 -9.86 16 11 C 0.15 2.50 2.42 -67.89 -0.16 2.34 16 12 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 13 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 14 N -0.59 -14.47 2.99 -172.32 -0.52 -14.98 16 15 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 19 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 24 C -0.15 -2.59 5.55 -26.61 -0.15 -2.74 16 25 C -0.16 -1.56 9.55 -38.84 -0.37 -1.93 16 26 C 0.31 3.02 7.74 -17.16 -0.13 2.88 16 27 O -0.48 -3.90 13.56 -18.74 -0.25 -4.15 16 28 N -0.48 -4.88 7.01 -9.60 -0.07 -4.95 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.83 5.17 -51.93 -0.27 0.56 16 36 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.15 1.53 7.62 -52.48 -0.40 1.13 16 39 H 0.40 4.24 6.74 -40.82 -0.28 3.97 16 40 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.14 1.10 6.53 -52.49 -0.34 0.76 16 51 H 0.40 1.29 9.06 45.56 0.41 1.70 16 LS Contribution 405.78 15.07 6.12 6.12 Total: -1.00 -32.33 405.78 -9.33 -41.66 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.45 Total: 3.42 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.56 Total: 0.80 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.24 Total: -54.87 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.17 Total: -13.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.33 -9.33 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611478241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.595 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds