Wall clock time and date at job start Wed Apr 1 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47069 * 239.99944 * 2 1 3 5 5 C 1.50700 * 109.47192 * 185.00076 * 4 2 1 6 6 C 1.38016 * 119.51466 * 124.72825 * 5 4 2 7 7 C 1.39928 * 119.13198 * 179.73722 * 6 5 4 8 8 C 1.48164 * 120.89167 * 180.26339 * 7 6 5 9 9 O 1.21521 * 120.00064 * 0.26607 * 8 7 6 10 10 N 1.34779 * 120.00290 * 180.26860 * 8 7 6 11 11 C 1.46496 * 120.00066 * 179.97438 * 10 8 7 12 12 C 1.53029 * 109.46213 * 275.02532 * 11 10 8 13 13 C 1.53196 * 109.31300 * 178.60156 * 12 11 10 14 14 N 1.46923 * 108.76628 * 54.65830 * 13 12 11 15 15 C 1.36935 * 120.63387 * 126.40419 * 14 13 12 16 16 H 1.08003 * 119.99763 * 331.82653 * 15 14 13 17 17 C 1.38808 * 120.00126 * 151.82898 * 15 14 13 18 18 N 1.31621 * 119.99961 * 343.06996 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 163.06904 * 17 15 14 20 20 H 1.48500 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47203 * 120.00068 * 19 17 15 22 22 H 1.48506 * 109.47151 * 240.00013 * 19 17 15 23 23 C 1.46931 * 118.73648 * 306.38799 * 14 13 12 24 24 C 1.53045 * 109.45813 * 154.97185 * 11 10 8 25 25 C 1.39609 * 118.21675 * 0.51854 * 7 6 5 26 26 C 1.38853 * 118.94942 * 359.74502 * 25 7 6 27 27 O 1.35678 * 119.62301 * 179.97438 * 26 25 7 28 28 N 1.31878 * 119.51253 * 305.00150 * 5 4 2 29 29 H 1.09006 * 109.47338 * 60.00057 * 1 2 3 30 30 H 1.09001 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47249 * 300.00584 * 1 2 3 32 32 H 1.08997 * 109.47235 * 120.00083 * 2 1 3 33 33 H 1.09006 * 109.46902 * 300.00210 * 3 2 1 34 34 H 1.08998 * 109.47174 * 59.99701 * 3 2 1 35 35 H 1.08995 * 109.47497 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47068 * 304.99799 * 4 2 1 37 37 H 1.08998 * 109.46779 * 64.99965 * 4 2 1 38 38 H 1.08006 * 120.43321 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99654 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.45846 * 35.00258 * 11 10 8 41 41 H 1.09004 * 109.50079 * 298.56938 * 12 11 10 42 42 H 1.09003 * 109.49624 * 58.66918 * 12 11 10 43 43 H 1.09000 * 109.59786 * 294.87185 * 13 12 11 44 44 H 1.09000 * 109.69959 * 174.50861 * 13 12 11 45 45 H 0.96998 * 119.99697 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.57998 * 293.81546 * 23 14 13 47 47 H 1.09003 * 109.70124 * 173.46747 * 23 14 13 48 48 H 1.08999 * 109.49590 * 301.33901 * 24 11 10 49 49 H 1.08995 * 109.49851 * 61.39937 * 24 11 10 50 50 H 1.08000 * 120.52595 * 179.71324 * 25 7 6 51 51 H 0.96704 * 114.00031 * 270.01594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.8294 -1.1889 6 6 4.1391 -2.0689 -1.2971 7 6 5.5345 -2.1595 -1.2456 8 6 6.2167 -3.4695 -1.3636 9 8 5.5636 -4.4835 -1.5121 10 7 7.5616 -3.5366 -1.3061 11 6 8.2360 -4.8319 -1.4222 12 6 8.2896 -5.5038 -0.0483 13 6 8.9641 -6.8729 -0.1799 14 7 10.2766 -6.6941 -0.8154 15 6 11.4106 -7.1842 -0.2245 16 1 11.4584 -7.2872 0.8495 17 6 12.4984 -7.5486 -1.0059 18 7 12.3443 -7.7443 -2.2983 19 14 14.1811 -7.7613 -0.2232 20 1 14.0884 -7.4847 1.2329 21 1 14.6527 -9.1536 -0.4340 22 1 15.1402 -6.8141 -0.8463 23 6 10.3494 -5.9797 -2.0972 24 6 9.6591 -4.6208 -1.9442 25 6 6.2665 -0.9831 -1.0746 26 6 5.5859 0.2226 -0.9686 27 8 6.2836 1.3742 -0.8016 28 7 4.2658 0.2611 -1.0281 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.6053 -1.7198 -1.2951 37 1 1.7515 -0.1583 -2.1369 38 1 3.5376 -2.9570 -1.4237 39 1 8.0829 -2.7272 -1.1879 40 1 7.6852 -5.4672 -2.1159 41 1 8.8615 -4.8808 0.6393 42 1 7.2767 -5.6327 0.3334 43 1 8.3464 -7.5272 -0.7951 44 1 9.0936 -7.3152 0.8079 45 1 13.1045 -7.9986 -2.8444 46 1 9.8447 -6.5612 -2.8687 47 1 11.3926 -5.8304 -2.3760 48 1 9.6211 -4.1210 -2.9122 49 1 10.2178 -4.0057 -1.2389 50 1 7.3450 -1.0103 -1.0251 51 1 6.4434 1.6067 0.1234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611478241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:27 Heat of formation + Delta-G solvation = -53.016478 kcal Electronic energy + Delta-G solvation = -30321.919274 eV Core-core repulsion = 26220.773527 eV Total energy + Delta-G solvation = -4101.145747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03337 -40.77762 -39.01153 -38.47473 -36.79879 -36.12808 -34.31480 -33.46487 -32.03666 -31.75112 -31.10448 -28.07175 -27.85358 -27.20548 -25.47666 -23.98796 -23.88152 -23.44139 -21.69930 -21.21717 -20.75005 -19.75063 -18.84170 -18.21501 -18.08568 -17.01631 -16.84458 -16.73902 -16.63997 -16.10191 -15.71651 -15.63504 -15.38269 -15.33114 -14.96623 -14.81119 -14.71524 -14.38278 -14.13065 -13.90722 -13.47394 -13.23398 -13.10258 -13.03486 -13.02522 -12.87835 -12.64769 -12.56501 -12.48742 -12.26472 -12.07944 -12.01588 -11.89018 -11.67801 -11.61233 -11.54601 -11.44456 -11.21098 -10.99504 -10.57657 -10.25664 -10.12588 -9.88105 -8.71935 -7.88766 -5.34429 -0.46911 -0.12640 1.47167 1.49520 1.59884 1.68541 1.90982 2.43493 2.51300 2.66444 3.26799 3.32225 3.43742 3.65264 3.83215 3.84625 3.88074 4.00271 4.04954 4.07166 4.16980 4.29004 4.34193 4.43805 4.46021 4.62880 4.64172 4.75594 4.79136 4.82532 4.82970 4.92392 4.92658 4.97463 5.01208 5.03184 5.12739 5.15059 5.19535 5.27782 5.34148 5.38136 5.42520 5.45753 5.52843 5.64186 5.70223 5.77040 6.37559 6.40717 6.57154 6.81420 7.03916 7.13724 7.83082 8.35720 9.18471 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.001943 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.189083 B =14406.128509 C =14975.678947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.156 4.156 4 C -0.067 4.067 5 C 0.153 3.847 6 C -0.131 4.131 7 C -0.074 4.074 8 C 0.556 3.444 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.162 3.838 12 C -0.124 4.124 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.288 1.288 23 C 0.178 3.822 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.310 3.690 27 O -0.484 6.484 28 N -0.487 5.487 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.413 0.587 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.008 0.992 44 H 0.059 0.941 45 H 0.251 0.749 46 H -0.005 1.005 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.166 0.834 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.361 20.846 4.745 28.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.213 4.213 4 C -0.105 4.105 5 C 0.015 3.985 6 C -0.152 4.152 7 C -0.084 4.084 8 C 0.343 3.657 9 O -0.445 6.445 10 N -0.351 5.351 11 C 0.057 3.943 12 C -0.164 4.164 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.391 4.391 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.215 1.215 23 C 0.052 3.948 24 C -0.169 4.169 25 C -0.177 4.177 26 C 0.131 3.869 27 O -0.295 6.295 28 N -0.207 5.207 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.013 0.987 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.183 0.817 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -20.018 20.909 4.030 29.226 hybrid contribution 1.800 -1.012 0.448 2.113 sum -18.218 19.897 4.478 27.347 Atomic orbital electron populations 1.21832 0.93914 1.02266 1.02234 1.20975 0.96288 0.96640 0.96512 1.22123 1.03624 0.94994 1.00589 1.20817 0.86242 1.03272 1.00129 1.21245 0.97389 0.86417 0.93400 1.22229 0.93764 0.99954 0.99240 1.20175 0.94671 0.92649 1.00944 1.18454 0.82568 0.88369 0.76318 1.90779 1.65942 1.37296 1.50514 1.45978 1.05816 1.10932 1.72368 1.20746 0.92766 0.83686 0.97074 1.22180 0.99886 0.97623 0.96721 1.20969 0.86198 0.94410 0.96628 1.44353 1.02185 1.63543 1.23138 1.19544 0.92195 1.36191 0.91208 0.91420 1.25816 1.02751 0.99583 0.96418 1.70187 1.30321 1.51410 1.06239 0.85200 0.80055 0.76712 0.78412 1.19036 1.22212 1.21472 1.20565 0.99228 0.88857 0.86197 1.22275 0.93854 0.99424 1.01376 1.22442 1.02772 0.90743 1.01722 1.19139 0.86629 0.85566 0.95603 1.84774 1.71967 1.38415 1.34315 1.66973 1.07355 1.32880 1.13517 0.92197 0.92037 0.92366 0.92059 0.93400 0.93543 0.90194 0.88321 0.89016 0.83101 0.74905 0.91952 0.91252 0.91991 0.97391 0.92278 0.94030 0.98680 0.91796 0.90439 0.90849 0.81676 0.71591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.10 16 3 C -0.16 -2.20 8.81 71.98 0.63 -1.56 16 4 C -0.07 -0.87 5.13 29.85 0.15 -0.71 16 5 C 0.15 2.69 6.17 42.50 0.26 2.95 16 6 C -0.13 -2.61 9.27 22.63 0.21 -2.40 16 7 C -0.07 -1.56 5.91 -19.90 -0.12 -1.68 16 8 C 0.56 15.08 7.76 86.88 0.67 15.76 16 9 O -0.57 -19.81 16.11 -3.78 -0.06 -19.87 16 10 N -0.70 -17.41 5.03 -444.98 -2.24 -19.65 16 11 C 0.16 5.22 2.42 45.02 0.11 5.33 16 12 C -0.12 -4.22 5.65 30.67 0.17 -4.05 16 13 C 0.14 6.07 6.52 86.36 0.56 6.63 16 14 N -0.61 -30.05 2.99 -699.10 -2.09 -32.14 16 15 C -0.26 -14.09 9.58 84.03 0.81 -13.29 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 18 N -0.94 -54.57 11.19 21.65 0.24 -54.33 16 19 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.18 8.29 5.30 86.36 0.46 8.75 16 24 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 25 C -0.16 -2.59 9.55 22.75 0.22 -2.38 16 26 C 0.31 5.32 7.74 84.78 0.66 5.97 16 27 O -0.48 -6.61 13.56 -89.96 -1.22 -7.83 16 28 N -0.49 -9.05 7.01 -297.17 -2.08 -11.13 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 1.33 5.17 -2.39 -0.01 1.32 16 36 H 0.10 1.00 7.86 -2.39 -0.02 0.98 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.15 2.96 7.62 -2.91 -0.02 2.94 16 39 H 0.41 7.56 6.74 -92.71 -0.63 6.93 16 40 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 48 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.17 1.95 6.53 -2.91 -0.02 1.93 16 51 H 0.42 1.54 9.06 -74.05 -0.67 0.87 16 Total: -1.00 -70.51 405.78 0.25 -70.26 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.35 Total: 17.80 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.02 Total: 10.87 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.17 Total: -117.24 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.28 Total: -27.70 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.51 0.25 -70.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611478241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.245 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds