Wall clock time and date at job start Wed Apr 1 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47238 * 120.00195 * 2 1 3 5 5 C 1.53000 * 109.50129 * 59.93453 * 4 2 1 6 6 O 1.42894 * 109.46988 * 55.18417 * 5 4 2 7 7 C 1.53045 * 109.49903 * 180.02562 * 4 2 1 8 8 C 1.53035 * 109.53804 * 181.31452 * 7 4 2 9 9 C 1.53193 * 109.31101 * 298.63362 * 8 7 4 10 10 N 1.46920 * 108.77620 * 54.63857 * 9 8 7 11 11 C 1.34777 * 120.63261 * 126.36902 * 10 9 8 12 12 O 1.21576 * 120.00136 * 185.32896 * 11 10 9 13 13 N 1.34776 * 119.99848 * 5.33027 * 11 10 9 14 14 C 1.39248 * 120.00043 * 185.21938 * 13 11 10 15 15 C 1.39682 * 119.58007 * 174.86829 * 14 13 11 16 16 C 1.38639 * 119.50044 * 179.97438 * 15 14 13 17 17 C 1.38348 * 118.66853 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.13494 * 359.97438 * 17 16 15 19 19 C 1.41329 * 119.78838 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00227 * 0.02562 * 19 18 17 21 21 C 1.40032 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.30745 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99965 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47311 * 59.99804 * 23 21 19 25 25 H 1.48501 * 109.47012 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47130 * 299.99760 * 23 21 19 27 27 N 1.31909 * 119.57283 * 354.58937 * 14 13 11 28 28 C 1.46926 * 118.73612 * 306.38762 * 10 9 8 29 29 H 1.09008 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47550 * 299.99678 * 1 2 3 31 31 H 1.08997 * 109.47373 * 60.00301 * 1 2 3 32 32 H 1.09006 * 109.46953 * 239.99854 * 2 1 3 33 33 H 1.08995 * 109.47368 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47053 * 300.00106 * 3 2 1 35 35 H 1.08996 * 109.47297 * 60.00033 * 3 2 1 36 36 H 1.08996 * 109.47207 * 175.19565 * 5 4 2 37 37 H 1.09003 * 109.46623 * 295.19146 * 5 4 2 38 38 H 0.96703 * 113.99667 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.45746 * 61.28840 * 7 4 2 40 40 H 1.08998 * 109.44488 * 301.32626 * 7 4 2 41 41 H 1.08998 * 109.49761 * 178.68364 * 8 7 4 42 42 H 1.09000 * 109.52566 * 58.60246 * 8 7 4 43 43 H 1.09007 * 109.58468 * 174.42744 * 9 8 7 44 44 H 1.08996 * 109.58936 * 294.84372 * 9 8 7 45 45 H 0.96997 * 120.00358 * 5.21378 * 13 11 10 46 46 H 1.08004 * 120.24950 * 359.97438 * 15 14 13 47 47 H 1.08002 * 120.66738 * 180.02562 * 16 15 14 48 48 H 1.08005 * 120.43478 * 180.02562 * 17 16 15 49 49 H 0.96997 * 120.00491 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58789 * 293.81982 * 28 10 9 51 51 H 1.09000 * 109.58546 * 173.39972 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5290 -2.1635 1.2507 6 8 1.9095 -2.8048 0.0318 7 6 3.5704 -0.7211 1.2502 8 6 4.0816 -1.4708 2.4825 9 6 3.5972 -0.7556 3.7476 10 7 2.1353 -0.6228 3.6855 11 6 1.3619 -1.0664 4.6962 12 8 0.1509 -1.0397 4.5919 13 7 1.9310 -1.5397 5.8225 14 6 1.1379 -2.0981 6.8217 15 6 1.7434 -2.6828 7.9365 16 6 0.9523 -3.2377 8.9306 17 6 -0.4230 -3.1939 8.7862 18 6 -0.9721 -2.5904 7.6415 19 6 -2.3751 -2.5376 7.4801 20 1 -3.0218 -2.9597 8.2351 21 6 -2.9268 -1.9379 6.3413 22 7 -2.1440 -1.4265 5.4275 23 14 -4.7813 -1.8674 6.1283 24 1 -5.3809 -1.1122 7.2577 25 1 -5.1071 -1.1875 4.8490 26 1 -5.3301 -3.2472 6.1088 27 7 -0.1756 -2.0630 6.7061 28 6 1.5325 0.0024 2.5004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9611 -2.7012 2.0946 37 1 0.4424 -2.1638 1.3376 38 1 1.6184 -3.7245 -0.0362 39 1 3.9333 0.3064 1.2737 40 1 3.9339 -1.2140 0.3485 41 1 5.1713 -1.4905 2.4703 42 1 3.6991 -2.4915 2.4725 43 1 3.8742 -1.3389 4.6259 44 1 4.0519 0.2333 3.8052 45 1 2.8929 -1.4916 5.9371 46 1 2.8198 -2.7025 8.0233 47 1 1.4005 -3.6943 9.8007 48 1 -1.0664 -3.6172 9.5434 49 1 -2.5261 -1.0108 4.6388 50 1 1.8188 1.0532 2.4562 51 1 0.4471 -0.0807 2.5557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:39 Heat of formation + Delta-G solvation = -16.520880 kcal Electronic energy + Delta-G solvation = -32885.454434 eV Core-core repulsion = 28785.891255 eV Total energy + Delta-G solvation = -4099.563179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.59853 -38.96662 -37.53839 -35.92191 -35.05363 -34.11848 -32.98461 -32.08648 -30.27949 -30.11175 -28.84323 -27.69634 -25.80233 -25.34861 -24.92650 -23.30028 -21.93041 -21.22029 -20.91321 -19.16363 -18.16433 -18.08810 -17.12949 -16.95178 -16.18175 -15.57029 -15.29483 -14.77822 -14.69465 -14.57169 -14.39225 -14.33366 -13.72110 -13.49218 -13.43332 -13.17268 -12.96209 -12.84286 -12.68998 -12.58025 -12.46868 -12.01495 -11.90200 -11.81226 -11.70837 -11.27281 -11.13220 -11.11160 -10.94767 -10.79384 -10.63660 -10.48406 -10.43335 -10.25193 -9.98428 -9.91595 -9.71754 -9.65235 -9.04233 -8.99299 -8.08117 -7.91887 -7.18464 -6.91472 -6.08519 -4.36550 2.87102 3.14505 3.16169 3.17867 3.19899 3.29826 4.08820 4.16522 4.17485 4.44019 4.66063 4.76737 4.78308 4.95261 4.99871 5.07073 5.20592 5.26989 5.41871 5.43596 5.53868 5.64488 5.65823 5.68890 5.77736 5.83959 5.88259 5.92586 5.94236 5.99288 6.05706 6.09030 6.12501 6.16889 6.22687 6.28876 6.42464 6.46936 6.51698 6.61063 6.81934 6.87525 6.99856 7.24340 7.39193 7.64269 7.65973 7.75543 7.84062 8.18990 8.30328 8.65068 8.81572 9.08944 9.59740 10.29747 10.52219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.004047 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.099864 B = 6917.548595 C = 8636.765523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.153 4.153 4 C -0.060 4.060 5 C 0.087 3.913 6 O -0.574 6.574 7 C -0.103 4.103 8 C -0.137 4.137 9 C 0.112 3.888 10 N -0.640 5.640 11 C 0.669 3.331 12 O -0.460 6.460 13 N -0.673 5.673 14 C 0.386 3.614 15 C -0.359 4.359 16 C -0.035 4.035 17 C -0.308 4.308 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.648 5.648 23 Si 0.893 3.107 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.268 1.268 27 N -0.470 5.470 28 C 0.141 3.859 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.375 0.625 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.394 0.606 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.272 0.728 50 H 0.065 0.935 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 3.036 -11.562 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.095 4.095 3 C -0.210 4.210 4 C -0.062 4.062 5 C 0.010 3.990 6 O -0.379 6.379 7 C -0.141 4.141 8 C -0.175 4.175 9 C -0.012 4.012 10 N -0.382 5.382 11 C 0.368 3.632 12 O -0.324 6.324 13 N -0.324 5.324 14 C 0.146 3.854 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.331 4.331 18 C 0.147 3.853 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.172 4.172 22 N -0.266 5.266 23 Si 0.718 3.282 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.193 1.193 27 N -0.189 5.189 28 C 0.017 3.983 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.221 0.779 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.229 0.771 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.881 4.171 -12.723 16.640 hybrid contribution 0.070 -0.955 0.920 1.328 sum 9.951 3.216 -11.803 15.770 Atomic orbital electron populations 1.21939 0.95204 1.02084 1.01674 1.20973 0.95725 0.95364 0.97483 1.21999 1.00979 0.96318 1.01739 1.20916 0.95819 0.94028 0.95397 1.22230 0.98452 0.92642 0.85721 1.86389 1.81551 1.29745 1.40167 1.21530 0.94260 1.00302 0.97997 1.21976 1.00281 1.00287 0.94952 1.21531 0.81764 0.99963 0.97981 1.47496 1.05294 1.66009 1.19430 1.16359 0.86262 0.80247 0.80296 1.91372 1.08784 1.53997 1.78199 1.42765 1.09259 1.63347 1.16986 1.18367 0.90448 0.91068 0.85478 1.20427 0.97573 1.20216 1.00290 1.20532 0.93715 0.95803 0.95912 1.21619 0.94195 1.14592 1.02667 1.18376 0.93263 0.87376 0.86310 1.19531 0.90449 1.31545 1.04096 0.90096 1.26174 0.99126 0.95661 0.96244 1.70337 1.34525 1.17700 1.04078 0.86630 0.84119 0.79220 0.78266 1.19211 1.20444 1.19250 1.68703 0.99276 1.22265 1.28650 1.21479 1.00217 0.94844 0.81761 0.92432 0.92219 0.93052 0.90376 0.92564 0.92944 0.92333 0.93255 0.93228 0.77932 0.91785 0.91334 0.91237 0.91318 0.90901 0.92086 0.77092 0.89283 0.88683 0.88646 0.91667 0.91716 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.50 37.15 0.32 -1.44 16 2 C -0.08 -0.84 2.09 -90.62 -0.19 -1.02 16 3 C -0.15 -1.45 8.49 37.16 0.32 -1.13 16 4 C -0.06 -0.72 0.15 -154.39 -0.02 -0.74 16 5 C 0.09 1.16 5.01 37.16 0.19 1.35 16 6 O -0.57 -6.74 12.35 -35.23 -0.44 -7.17 16 7 C -0.10 -1.08 4.20 -26.69 -0.11 -1.20 16 8 C -0.14 -1.42 5.74 -26.61 -0.15 -1.57 16 9 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 10 N -0.64 -9.84 2.49 -178.51 -0.45 -10.28 16 11 C 0.67 13.78 8.26 -86.92 -0.72 13.06 16 12 O -0.46 -11.58 11.52 5.30 0.06 -11.51 16 13 N -0.67 -13.60 5.25 -15.78 -0.08 -13.69 16 14 C 0.39 9.52 7.43 -154.99 -1.15 8.36 16 15 C -0.36 -8.14 9.95 -38.89 -0.39 -8.53 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 18 C 0.27 7.69 6.55 -85.00 -0.56 7.13 16 19 C -0.43 -11.78 9.14 -37.74 -0.34 -12.13 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 21 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 22 N -0.65 -17.94 8.98 55.55 0.50 -17.44 16 23 Si 0.89 19.35 29.56 -169.99 -5.02 14.33 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 N -0.47 -13.27 5.74 -10.26 -0.06 -13.32 16 28 C 0.14 1.98 4.37 -3.71 -0.02 1.96 16 29 H 0.06 0.72 6.54 -51.92 -0.34 0.38 16 30 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.91 7.57 -51.93 -0.39 0.51 16 33 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 36 H 0.05 0.74 5.85 -51.93 -0.30 0.43 16 37 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 38 H 0.37 3.15 9.12 45.56 0.42 3.56 16 39 H 0.06 0.61 6.50 -51.93 -0.34 0.27 16 40 H 0.07 0.74 7.86 -51.93 -0.41 0.34 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.82 6.24 -51.93 -0.32 0.49 16 43 H 0.07 0.80 5.75 -51.93 -0.30 0.50 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.39 6.33 6.29 -40.82 -0.26 6.07 16 46 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 47 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 48 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 49 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 50 H 0.06 0.83 6.18 -51.93 -0.32 0.51 16 51 H 0.10 1.67 5.61 -51.93 -0.29 1.38 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -32.80 381.33 -10.19 -42.99 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.72 Total: 12.96 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.73 Total: -2.60 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.09 Total: -54.73 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.37 Total: -18.69 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.80 -10.19 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.472 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds