Wall clock time and date at job start Wed Apr 1 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47238 * 120.00195 * 2 1 3 5 5 C 1.53000 * 109.50129 * 59.93453 * 4 2 1 6 6 O 1.42894 * 109.46988 * 55.18417 * 5 4 2 7 7 C 1.53045 * 109.49903 * 180.02562 * 4 2 1 8 8 C 1.53035 * 109.53804 * 181.31452 * 7 4 2 9 9 C 1.53193 * 109.31101 * 298.63362 * 8 7 4 10 10 N 1.46920 * 108.77620 * 54.63857 * 9 8 7 11 11 C 1.34777 * 120.63261 * 126.36902 * 10 9 8 12 12 O 1.21576 * 120.00136 * 185.32896 * 11 10 9 13 13 N 1.34776 * 119.99848 * 5.33027 * 11 10 9 14 14 C 1.39248 * 120.00043 * 185.21938 * 13 11 10 15 15 C 1.39682 * 119.58007 * 174.86829 * 14 13 11 16 16 C 1.38639 * 119.50044 * 179.97438 * 15 14 13 17 17 C 1.38348 * 118.66853 * 359.97438 * 16 15 14 18 18 C 1.40574 * 119.13494 * 359.97438 * 17 16 15 19 19 C 1.41329 * 119.78838 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00227 * 0.02562 * 19 18 17 21 21 C 1.40032 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.30745 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99965 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47311 * 59.99804 * 23 21 19 25 25 H 1.48501 * 109.47012 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47130 * 299.99760 * 23 21 19 27 27 N 1.31909 * 119.57283 * 354.58937 * 14 13 11 28 28 C 1.46926 * 118.73612 * 306.38762 * 10 9 8 29 29 H 1.09008 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47550 * 299.99678 * 1 2 3 31 31 H 1.08997 * 109.47373 * 60.00301 * 1 2 3 32 32 H 1.09006 * 109.46953 * 239.99854 * 2 1 3 33 33 H 1.08995 * 109.47368 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47053 * 300.00106 * 3 2 1 35 35 H 1.08996 * 109.47297 * 60.00033 * 3 2 1 36 36 H 1.08996 * 109.47207 * 175.19565 * 5 4 2 37 37 H 1.09003 * 109.46623 * 295.19146 * 5 4 2 38 38 H 0.96703 * 113.99667 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.45746 * 61.28840 * 7 4 2 40 40 H 1.08998 * 109.44488 * 301.32626 * 7 4 2 41 41 H 1.08998 * 109.49761 * 178.68364 * 8 7 4 42 42 H 1.09000 * 109.52566 * 58.60246 * 8 7 4 43 43 H 1.09007 * 109.58468 * 174.42744 * 9 8 7 44 44 H 1.08996 * 109.58936 * 294.84372 * 9 8 7 45 45 H 0.96997 * 120.00358 * 5.21378 * 13 11 10 46 46 H 1.08004 * 120.24950 * 359.97438 * 15 14 13 47 47 H 1.08002 * 120.66738 * 180.02562 * 16 15 14 48 48 H 1.08005 * 120.43478 * 180.02562 * 17 16 15 49 49 H 0.96997 * 120.00491 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58789 * 293.81982 * 28 10 9 51 51 H 1.09000 * 109.58546 * 173.39972 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5290 -2.1635 1.2507 6 8 1.9095 -2.8048 0.0318 7 6 3.5704 -0.7211 1.2502 8 6 4.0816 -1.4708 2.4825 9 6 3.5972 -0.7556 3.7476 10 7 2.1353 -0.6228 3.6855 11 6 1.3619 -1.0664 4.6962 12 8 0.1509 -1.0397 4.5919 13 7 1.9310 -1.5397 5.8225 14 6 1.1379 -2.0981 6.8217 15 6 1.7434 -2.6828 7.9365 16 6 0.9523 -3.2377 8.9306 17 6 -0.4230 -3.1939 8.7862 18 6 -0.9721 -2.5904 7.6415 19 6 -2.3751 -2.5376 7.4801 20 1 -3.0218 -2.9597 8.2351 21 6 -2.9268 -1.9379 6.3413 22 7 -2.1440 -1.4265 5.4275 23 14 -4.7813 -1.8674 6.1283 24 1 -5.3809 -1.1122 7.2577 25 1 -5.1071 -1.1875 4.8490 26 1 -5.3301 -3.2472 6.1088 27 7 -0.1756 -2.0630 6.7061 28 6 1.5325 0.0024 2.5004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9611 -2.7012 2.0946 37 1 0.4424 -2.1638 1.3376 38 1 1.6184 -3.7245 -0.0362 39 1 3.9333 0.3064 1.2737 40 1 3.9339 -1.2140 0.3485 41 1 5.1713 -1.4905 2.4703 42 1 3.6991 -2.4915 2.4725 43 1 3.8742 -1.3389 4.6259 44 1 4.0519 0.2333 3.8052 45 1 2.8929 -1.4916 5.9371 46 1 2.8198 -2.7025 8.0233 47 1 1.4005 -3.6943 9.8007 48 1 -1.0664 -3.6172 9.5434 49 1 -2.5261 -1.0108 4.6388 50 1 1.8188 1.0532 2.4562 51 1 0.4471 -0.0807 2.5557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:37 Heat of formation + Delta-G solvation = -37.167608 kcal Electronic energy + Delta-G solvation = -32886.349743 eV Core-core repulsion = 28785.891255 eV Total energy + Delta-G solvation = -4100.458488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.82465 -40.49791 -39.20104 -37.03107 -36.13616 -35.90237 -34.81941 -33.22105 -32.18073 -31.29298 -30.53345 -28.60416 -27.57026 -26.54793 -26.16497 -24.26645 -23.67102 -23.04415 -21.97250 -20.66036 -19.84034 -19.11180 -18.62628 -18.13780 -17.87261 -16.73313 -16.53854 -16.29656 -16.23001 -16.13246 -15.78555 -15.49823 -15.23436 -14.79664 -14.71790 -14.61402 -14.35579 -13.98373 -13.79949 -13.75432 -13.64797 -13.49029 -13.42254 -12.87810 -12.80091 -12.72899 -12.61444 -12.55715 -12.32360 -12.18425 -12.03123 -11.77585 -11.71695 -11.56219 -11.40365 -11.20112 -10.95106 -10.85123 -10.81190 -10.67514 -9.87638 -9.36697 -9.08623 -8.75205 -8.00875 -6.39902 0.98297 1.29755 1.38471 1.49688 1.53233 1.75367 2.26539 2.55655 3.01504 3.05512 3.26368 3.71337 3.77995 3.84288 4.06775 4.10058 4.14459 4.27986 4.30632 4.37257 4.40583 4.47800 4.57446 4.62939 4.65406 4.73525 4.80068 4.82496 4.84358 4.88051 4.96908 4.97727 5.01412 5.06609 5.07543 5.09557 5.16577 5.27764 5.28916 5.31569 5.40175 5.55599 5.56034 5.66048 5.78326 5.86686 5.94594 6.04654 6.27389 6.42002 6.78490 6.83467 7.07481 7.16834 8.01069 8.39543 8.59240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.004047 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.099864 B = 6917.548595 C = 8636.765523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.149 4.149 4 C -0.054 4.054 5 C 0.097 3.903 6 O -0.572 6.572 7 C -0.098 4.098 8 C -0.131 4.131 9 C 0.105 3.895 10 N -0.631 5.631 11 C 0.660 3.340 12 O -0.512 6.512 13 N -0.663 5.663 14 C 0.364 3.636 15 C -0.347 4.347 16 C -0.033 4.033 17 C -0.332 4.332 18 C 0.238 3.762 19 C -0.467 4.467 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.681 5.681 23 Si 0.970 3.030 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.261 1.261 27 N -0.504 5.504 28 C 0.142 3.858 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.020 0.980 38 H 0.389 0.611 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.413 0.587 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.103 0.897 49 H 0.268 0.732 50 H 0.083 0.917 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.759 3.590 -12.155 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.055 4.055 5 C 0.019 3.981 6 O -0.379 6.379 7 C -0.136 4.136 8 C -0.169 4.169 9 C -0.017 4.017 10 N -0.372 5.372 11 C 0.360 3.640 12 O -0.380 6.380 13 N -0.315 5.315 14 C 0.125 3.875 15 C -0.373 4.373 16 C -0.057 4.057 17 C -0.355 4.355 18 C 0.113 3.887 19 C -0.498 4.498 20 H 0.103 0.897 21 C -0.215 4.215 22 N -0.300 5.300 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.185 1.185 27 N -0.224 5.224 28 C 0.019 3.981 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.253 0.747 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.122 0.878 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.727 4.720 -13.337 19.030 hybrid contribution -0.593 -1.179 1.112 1.726 sum 12.134 3.541 -12.225 17.585 Atomic orbital electron populations 1.21919 0.96254 1.00979 1.01612 1.20929 0.94788 0.96554 0.96669 1.21968 1.01872 0.94746 1.02035 1.20864 0.97340 0.92648 0.94677 1.22014 0.96528 0.93821 0.85729 1.86351 1.81385 1.31006 1.39139 1.21522 0.92289 1.01565 0.98181 1.21946 1.02021 0.98884 0.94027 1.21870 0.78921 1.01838 0.99113 1.47437 1.06859 1.64684 1.18181 1.16634 0.86158 0.80084 0.81098 1.91360 1.11342 1.56010 1.79276 1.42618 1.09906 1.62765 1.16204 1.18869 0.90180 0.91406 0.87083 1.20898 0.99673 1.17817 0.98895 1.21005 0.92748 0.94792 0.97143 1.21803 0.95881 1.15439 1.02393 1.18861 0.94077 0.88238 0.87547 1.19855 0.91036 1.33567 1.05336 0.89744 1.27005 1.04090 0.94865 0.95491 1.70552 1.36407 1.18696 1.04357 0.85462 0.77738 0.79406 0.78285 1.18443 1.19994 1.18538 1.68671 1.01084 1.23209 1.29405 1.21527 0.98271 0.96047 0.82244 0.94135 0.93706 0.91600 0.90363 0.91035 0.91920 0.92835 0.95080 0.96193 0.76288 0.89801 0.91010 0.88109 0.93207 0.90262 0.89415 0.74744 0.85210 0.84513 0.87845 0.92154 0.89882 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.50 71.98 0.61 -2.98 16 2 C -0.07 -1.47 2.09 -10.80 -0.02 -1.49 16 3 C -0.15 -2.46 8.49 71.98 0.61 -1.85 16 4 C -0.05 -1.26 0.15 -52.10 -0.01 -1.26 16 5 C 0.10 2.68 5.01 71.98 0.36 3.04 16 6 O -0.57 -13.24 12.35 -148.98 -1.84 -15.08 16 7 C -0.10 -1.77 4.20 30.62 0.13 -1.64 16 8 C -0.13 -2.33 5.74 30.67 0.18 -2.15 16 9 C 0.10 2.15 6.34 86.36 0.55 2.70 16 10 N -0.63 -19.23 2.49 -836.93 -2.09 -21.32 16 11 C 0.66 27.98 8.26 179.05 1.48 29.46 16 12 O -0.51 -27.40 11.52 -3.96 -0.05 -27.44 16 13 N -0.66 -26.66 5.25 -322.12 -1.69 -28.35 16 14 C 0.36 18.07 7.43 133.26 0.99 19.06 16 15 C -0.35 -15.07 9.95 22.71 0.23 -14.84 16 16 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16 17 C -0.33 -17.08 9.83 22.87 0.22 -16.86 16 18 C 0.24 14.03 6.55 40.19 0.26 14.29 16 19 C -0.47 -27.13 9.14 23.47 0.21 -26.92 16 20 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 21 C 0.01 0.63 5.50 85.29 0.47 1.10 16 22 N -0.68 -40.07 8.98 21.84 0.20 -39.87 16 23 Si 0.97 41.60 29.56 68.60 2.03 43.63 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 N -0.50 -29.57 5.74 -186.37 -1.07 -30.64 16 28 C 0.14 4.05 4.37 86.36 0.38 4.42 16 29 H 0.04 1.08 6.54 -2.38 -0.02 1.06 16 30 H 0.04 1.19 6.57 -2.38 -0.02 1.18 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.68 7.57 -2.38 -0.02 1.66 16 33 H 0.07 0.98 6.46 -2.39 -0.02 0.96 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 0.94 6.32 -2.39 -0.02 0.93 16 36 H 0.03 0.97 5.85 -2.39 -0.01 0.95 16 37 H 0.02 0.66 6.70 -2.39 -0.02 0.64 16 38 H 0.39 6.47 9.12 -74.06 -0.68 5.80 16 39 H 0.08 1.23 6.50 -2.39 -0.02 1.22 16 40 H 0.07 1.32 7.86 -2.39 -0.02 1.30 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.10 6.24 -2.39 -0.01 1.09 16 43 H 0.08 1.52 5.75 -2.38 -0.01 1.51 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.41 12.55 6.29 -92.71 -0.58 11.97 16 46 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 49 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 50 H 0.08 2.05 6.18 -2.39 -0.01 2.04 16 51 H 0.06 2.26 5.61 -2.39 -0.01 2.25 16 Total: -1.00 -76.74 381.33 2.09 -74.65 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.28 Total: 41.57 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.88 Total: 2.86 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -4.65 Total: -120.18 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.89 Total: -42.53 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -76.74 2.09 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.481 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds