Wall clock time and date at job start Wed Apr 1 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47102 * 119.99594 * 2 1 3 5 5 C 1.53002 * 109.49888 * 292.70886 * 4 2 1 6 6 O 1.42901 * 109.47403 * 67.97643 * 5 4 2 7 7 C 1.53039 * 109.49844 * 172.64304 * 4 2 1 8 8 C 1.53042 * 109.53723 * 178.68849 * 7 4 2 9 9 C 1.53188 * 109.31677 * 61.35895 * 8 7 4 10 10 N 1.46928 * 108.77590 * 305.37113 * 9 8 7 11 11 C 1.34777 * 120.62437 * 233.58140 * 10 9 8 12 12 O 1.21579 * 120.00016 * 185.15109 * 11 10 9 13 13 N 1.34775 * 120.00466 * 5.15709 * 11 10 9 14 14 C 1.39241 * 120.00111 * 174.21990 * 13 11 10 15 15 C 1.39682 * 119.57700 * 20.59546 * 14 13 11 16 16 C 1.38648 * 119.49786 * 179.76850 * 15 14 13 17 17 C 1.38354 * 118.66860 * 0.49259 * 16 15 14 18 18 C 1.40573 * 119.13028 * 359.75384 * 17 16 15 19 19 C 1.41337 * 119.78663 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99978 * 6.23076 * 19 18 17 21 21 C 1.40027 * 119.99954 * 186.22062 * 19 18 17 22 22 N 1.30737 * 119.99959 * 6.20007 * 21 19 18 23 23 Si 1.86803 * 119.99783 * 186.19360 * 21 19 18 24 24 H 1.48498 * 109.46911 * 94.99703 * 23 21 19 25 25 H 1.48495 * 109.46914 * 214.99436 * 23 21 19 26 26 H 1.48501 * 109.47414 * 334.99883 * 23 21 19 27 27 N 1.31904 * 119.57715 * 200.86496 * 14 13 11 28 28 C 1.46923 * 118.74217 * 53.85913 * 10 9 8 29 29 H 1.08995 * 109.47081 * 311.24450 * 1 2 3 30 30 H 1.09005 * 109.46570 * 71.24827 * 1 2 3 31 31 H 1.08996 * 109.47170 * 191.24294 * 1 2 3 32 32 H 1.08996 * 109.47551 * 240.00156 * 2 1 3 33 33 H 1.09000 * 109.46903 * 299.99369 * 3 2 1 34 34 H 1.08994 * 109.47387 * 60.00135 * 3 2 1 35 35 H 1.09009 * 109.46929 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47271 * 187.98481 * 5 4 2 37 37 H 1.09003 * 109.46676 * 307.97644 * 5 4 2 38 38 H 0.96694 * 114.00263 * 179.97438 * 6 5 4 39 39 H 1.08990 * 109.46097 * 58.66183 * 7 4 2 40 40 H 1.09006 * 109.44338 * 298.69623 * 7 4 2 41 41 H 1.08999 * 109.49449 * 301.40724 * 8 7 4 42 42 H 1.09002 * 109.52104 * 181.33211 * 8 7 4 43 43 H 1.08993 * 109.58778 * 185.57794 * 9 8 7 44 44 H 1.09008 * 109.58343 * 65.15622 * 9 8 7 45 45 H 0.97000 * 119.99978 * 353.94168 * 13 11 10 46 46 H 1.07995 * 120.25346 * 0.02562 * 15 14 13 47 47 H 1.07997 * 120.66664 * 180.24285 * 16 15 14 48 48 H 1.08002 * 120.43317 * 179.76512 * 17 16 15 49 49 H 0.97002 * 120.00041 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.58713 * 65.92461 * 28 10 9 51 51 H 1.09000 * 109.58830 * 186.35753 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6853 0.0976 2.4922 6 8 0.2685 0.0913 2.6785 7 6 3.5592 -0.8835 1.1610 8 6 4.0743 -1.5756 2.4251 9 6 3.4447 -2.9679 2.5329 10 7 1.9829 -2.8319 2.4723 11 6 1.2034 -3.3653 3.4337 12 8 -0.0070 -3.3279 3.3251 13 7 1.7654 -3.9400 4.5155 14 6 0.9636 -4.3829 5.5641 15 6 -0.3916 -4.6342 5.3373 16 6 -1.1874 -5.0798 6.3815 17 6 -0.6117 -5.2531 7.6276 18 6 0.7569 -4.9781 7.7934 19 6 1.3591 -5.1498 9.0605 20 1 0.7951 -5.5858 9.8718 21 6 2.6870 -4.7547 9.2638 22 7 3.3311 -4.1177 8.3212 23 14 3.5380 -5.1376 10.8821 24 1 4.3065 -6.4014 10.7502 25 1 4.4635 -4.0294 11.2290 26 1 2.5205 -5.2866 11.9534 27 7 1.4923 -4.5547 6.7603 28 6 1.3869 -2.1087 1.3407 29 1 -0.3633 0.6775 0.7727 30 1 -0.3633 0.3304 -0.9732 31 1 -0.3633 -1.0079 0.2004 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 0.0005 36 1 2.1686 -0.3400 3.3657 37 1 2.0301 1.1234 2.3620 38 1 -0.0290 0.5920 3.4503 39 1 4.0245 0.0978 1.0689 40 1 3.8095 -1.4874 0.2888 41 1 3.8025 -0.9847 3.2998 42 1 5.1590 -1.6698 2.3725 43 1 3.7302 -3.4257 3.4799 44 1 3.7884 -3.5894 1.7059 45 1 2.7282 -4.0487 4.5617 46 1 -0.8154 -4.4866 4.3550 47 1 -2.2365 -5.2837 6.2264 48 1 -1.2059 -5.5953 8.4620 49 1 4.2509 -3.8437 8.4622 50 1 1.5663 -2.6615 0.4186 51 1 0.3143 -1.9994 1.5011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:42 Heat of formation + Delta-G solvation = -25.644328 kcal Electronic energy + Delta-G solvation = -32410.374522 eV Core-core repulsion = 28310.415721 eV Total energy + Delta-G solvation = -4099.958801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83482 -39.29109 -37.69751 -36.10711 -35.05876 -34.23607 -33.21298 -32.40199 -30.43697 -30.15813 -28.98508 -27.68164 -25.97828 -25.56796 -24.82567 -23.51045 -21.84889 -21.52332 -20.92171 -19.31969 -18.38387 -18.13375 -17.37868 -17.26259 -16.43173 -16.02474 -15.41642 -14.95093 -14.76246 -14.61295 -14.53395 -14.24028 -14.01986 -13.82138 -13.50525 -13.23765 -13.07405 -12.87092 -12.83743 -12.47827 -12.44233 -12.21332 -12.10493 -11.92048 -11.75004 -11.45631 -11.31885 -11.24514 -11.02873 -10.97773 -10.84802 -10.60480 -10.53108 -10.28269 -10.17180 -10.08092 -9.76745 -9.60764 -9.16229 -8.86104 -8.41966 -7.97967 -7.60333 -6.99626 -6.41883 -4.44905 2.74709 2.91914 2.99558 3.09726 3.13428 3.29198 3.76059 3.96988 4.17121 4.21544 4.47598 4.59719 4.77239 4.80881 4.83772 4.95175 5.05577 5.15276 5.21334 5.33916 5.38901 5.46145 5.57920 5.60270 5.66019 5.71164 5.74110 5.80474 5.86347 5.88245 5.95286 5.97169 6.04998 6.10717 6.16876 6.23258 6.35548 6.49088 6.52054 6.64826 6.84452 6.87295 7.07105 7.13134 7.27624 7.58386 7.67519 7.73933 7.98305 8.12107 8.23817 8.49238 8.75247 8.96987 9.14130 10.10116 10.34689 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003008 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.512929 B = 9305.794442 C =10196.658664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.066 4.066 5 C 0.084 3.916 6 O -0.556 6.556 7 C -0.109 4.109 8 C -0.140 4.140 9 C 0.107 3.893 10 N -0.628 5.628 11 C 0.712 3.288 12 O -0.561 6.561 13 N -0.661 5.661 14 C 0.372 3.628 15 C -0.314 4.314 16 C -0.051 4.051 17 C -0.292 4.292 18 C 0.283 3.717 19 C -0.440 4.440 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.727 5.727 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.262 1.262 27 N -0.512 5.512 28 C 0.143 3.857 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.373 0.627 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.400 0.600 46 H 0.142 0.858 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.269 0.731 50 H 0.057 0.943 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 9.563 -15.202 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.207 4.207 4 C -0.067 4.067 5 C 0.007 3.993 6 O -0.361 6.361 7 C -0.146 4.146 8 C -0.178 4.178 9 C -0.017 4.017 10 N -0.366 5.366 11 C 0.413 3.587 12 O -0.437 6.437 13 N -0.310 5.310 14 C 0.137 3.863 15 C -0.338 4.338 16 C -0.076 4.076 17 C -0.315 4.315 18 C 0.156 3.844 19 C -0.472 4.472 20 H 0.102 0.898 21 C -0.150 4.150 22 N -0.349 5.349 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.186 1.186 27 N -0.231 5.231 28 C 0.020 3.980 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.220 0.780 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.237 0.763 46 H 0.160 0.840 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.795 9.513 -15.739 19.005 hybrid contribution 0.326 0.022 1.213 1.256 sum 5.120 9.535 -14.526 18.114 Atomic orbital electron populations 1.21987 0.94254 1.03364 1.00995 1.21020 0.96810 0.95641 0.96292 1.21970 1.00637 0.96259 1.01813 1.21060 0.95152 0.95617 0.94852 1.22249 0.82388 0.97810 0.96894 1.86559 1.21339 1.77276 1.50882 1.21586 0.94018 1.00926 0.98104 1.22013 1.00294 0.96568 0.98911 1.21650 0.80500 0.97118 1.02389 1.47250 1.05566 1.58695 1.25104 1.15655 0.85094 0.78349 0.79552 1.90766 1.11716 1.62960 1.78232 1.42432 1.10396 1.61313 1.16835 1.18237 0.87541 0.93576 0.86926 1.21943 0.94132 1.15926 1.01846 1.20847 0.97532 0.96041 0.93132 1.21707 0.96823 1.15894 0.97081 1.18141 0.87542 0.87640 0.91097 1.19530 0.96518 1.35687 0.95446 0.89761 1.25999 0.97699 0.93500 0.97785 1.70086 1.09762 1.23654 1.31412 0.86352 0.79579 0.78769 0.82291 1.19556 1.20309 1.18575 1.67952 1.37694 1.21133 0.96272 1.21606 1.00402 0.88999 0.86948 0.90701 0.94016 0.92131 0.91489 0.92867 0.92260 0.92809 0.93547 0.93770 0.78011 0.91393 0.91229 0.90972 0.90592 0.90097 0.91424 0.76295 0.84034 0.88447 0.88370 0.91952 0.92502 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.06 37.16 0.30 -1.25 16 2 C -0.08 -0.72 2.29 -90.62 -0.21 -0.92 16 3 C -0.15 -1.18 8.42 37.16 0.31 -0.87 16 4 C -0.07 -0.68 0.29 -154.16 -0.04 -0.72 16 5 C 0.08 0.96 5.24 37.16 0.19 1.16 16 6 O -0.56 -7.10 9.67 -35.23 -0.34 -7.45 16 7 C -0.11 -0.93 4.53 -26.69 -0.12 -1.05 16 8 C -0.14 -1.33 5.75 -26.61 -0.15 -1.48 16 9 C 0.11 1.23 6.43 -3.71 -0.02 1.21 16 10 N -0.63 -9.25 2.54 -178.24 -0.45 -9.70 16 11 C 0.71 13.97 8.20 -86.92 -0.71 13.25 16 12 O -0.56 -12.74 12.39 5.30 0.07 -12.68 16 13 N -0.66 -13.95 5.32 -15.79 -0.08 -14.04 16 14 C 0.37 9.49 7.52 -155.00 -1.16 8.33 16 15 C -0.31 -7.96 8.92 -38.89 -0.35 -8.30 16 16 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 17 C -0.29 -7.53 9.83 -38.66 -0.38 -7.91 16 18 C 0.28 7.91 6.53 -85.00 -0.55 7.36 16 19 C -0.44 -11.88 9.13 -37.73 -0.34 -12.22 16 20 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 21 C 0.07 1.89 5.48 -17.35 -0.10 1.79 16 22 N -0.73 -18.99 11.54 55.55 0.64 -18.35 16 23 Si 0.91 18.58 29.56 -169.99 -5.03 13.56 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 N -0.51 -14.18 7.97 -10.26 -0.08 -14.26 16 28 C 0.14 1.88 4.25 -3.48 -0.01 1.86 16 29 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.72 5.81 -51.93 -0.30 0.42 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.50 6.15 -51.93 -0.32 0.18 16 35 H 0.05 0.38 6.62 -51.92 -0.34 0.04 16 36 H 0.05 0.62 5.79 -51.93 -0.30 0.32 16 37 H 0.04 0.43 5.86 -51.93 -0.30 0.13 16 38 H 0.37 3.80 9.12 45.56 0.42 4.22 16 39 H 0.07 0.51 6.59 -51.93 -0.34 0.17 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.99 5.57 -51.93 -0.29 0.70 16 44 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.40 7.64 6.28 -40.82 -0.26 7.38 16 46 H 0.14 3.60 5.08 -53.30 -0.27 3.33 16 47 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 48 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 49 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.11 1.77 4.55 -51.93 -0.24 1.53 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -32.33 380.37 -9.85 -42.18 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -6.54 Total: 16.41 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.76 Total: -1.41 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.02 Total: -56.35 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.27 Total: -20.12 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.33 -9.85 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.531 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds