Wall clock time and date at job start Wed Apr 1 2020 04:47:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.46722 * 2 1
4 4 C 1.53002 * 109.47102 * 119.99594 * 2 1 3
5 5 C 1.53002 * 109.49888 * 292.70886 * 4 2 1
6 6 O 1.42901 * 109.47403 * 67.97643 * 5 4 2
7 7 C 1.53039 * 109.49844 * 172.64304 * 4 2 1
8 8 C 1.53042 * 109.53723 * 178.68849 * 7 4 2
9 9 C 1.53188 * 109.31677 * 61.35895 * 8 7 4
10 10 N 1.46928 * 108.77590 * 305.37113 * 9 8 7
11 11 C 1.34777 * 120.62437 * 233.58140 * 10 9 8
12 12 O 1.21579 * 120.00016 * 185.15109 * 11 10 9
13 13 N 1.34775 * 120.00466 * 5.15709 * 11 10 9
14 14 C 1.39241 * 120.00111 * 174.21990 * 13 11 10
15 15 C 1.39682 * 119.57700 * 20.59546 * 14 13 11
16 16 C 1.38648 * 119.49786 * 179.76850 * 15 14 13
17 17 C 1.38354 * 118.66860 * 0.49259 * 16 15 14
18 18 C 1.40573 * 119.13028 * 359.75384 * 17 16 15
19 19 C 1.41337 * 119.78663 * 179.97438 * 18 17 16
20 20 H 1.08004 * 119.99978 * 6.23076 * 19 18 17
21 21 C 1.40027 * 119.99954 * 186.22062 * 19 18 17
22 22 N 1.30737 * 119.99959 * 6.20007 * 21 19 18
23 23 Si 1.86803 * 119.99783 * 186.19360 * 21 19 18
24 24 H 1.48498 * 109.46911 * 94.99703 * 23 21 19
25 25 H 1.48495 * 109.46914 * 214.99436 * 23 21 19
26 26 H 1.48501 * 109.47414 * 334.99883 * 23 21 19
27 27 N 1.31904 * 119.57715 * 200.86496 * 14 13 11
28 28 C 1.46923 * 118.74217 * 53.85913 * 10 9 8
29 29 H 1.08995 * 109.47081 * 311.24450 * 1 2 3
30 30 H 1.09005 * 109.46570 * 71.24827 * 1 2 3
31 31 H 1.08996 * 109.47170 * 191.24294 * 1 2 3
32 32 H 1.08996 * 109.47551 * 240.00156 * 2 1 3
33 33 H 1.09000 * 109.46903 * 299.99369 * 3 2 1
34 34 H 1.08994 * 109.47387 * 60.00135 * 3 2 1
35 35 H 1.09009 * 109.46929 * 179.97438 * 3 2 1
36 36 H 1.08999 * 109.47271 * 187.98481 * 5 4 2
37 37 H 1.09003 * 109.46676 * 307.97644 * 5 4 2
38 38 H 0.96694 * 114.00263 * 179.97438 * 6 5 4
39 39 H 1.08990 * 109.46097 * 58.66183 * 7 4 2
40 40 H 1.09006 * 109.44338 * 298.69623 * 7 4 2
41 41 H 1.08999 * 109.49449 * 301.40724 * 8 7 4
42 42 H 1.09002 * 109.52104 * 181.33211 * 8 7 4
43 43 H 1.08993 * 109.58778 * 185.57794 * 9 8 7
44 44 H 1.09008 * 109.58343 * 65.15622 * 9 8 7
45 45 H 0.97000 * 119.99978 * 353.94168 * 13 11 10
46 46 H 1.07995 * 120.25346 * 0.02562 * 15 14 13
47 47 H 1.07997 * 120.66664 * 180.24285 * 16 15 14
48 48 H 1.08002 * 120.43317 * 179.76512 * 17 16 15
49 49 H 0.97002 * 120.00041 * 179.97438 * 22 21 19
50 50 H 1.08993 * 109.58713 * 65.92461 * 28 10 9
51 51 H 1.09000 * 109.58830 * 186.35753 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.6853 0.0976 2.4922
6 8 0.2685 0.0913 2.6785
7 6 3.5592 -0.8835 1.1610
8 6 4.0743 -1.5756 2.4251
9 6 3.4447 -2.9679 2.5329
10 7 1.9829 -2.8319 2.4723
11 6 1.2034 -3.3653 3.4337
12 8 -0.0070 -3.3279 3.3251
13 7 1.7654 -3.9400 4.5155
14 6 0.9636 -4.3829 5.5641
15 6 -0.3916 -4.6342 5.3373
16 6 -1.1874 -5.0798 6.3815
17 6 -0.6117 -5.2531 7.6276
18 6 0.7569 -4.9781 7.7934
19 6 1.3591 -5.1498 9.0605
20 1 0.7951 -5.5858 9.8718
21 6 2.6870 -4.7547 9.2638
22 7 3.3311 -4.1177 8.3212
23 14 3.5380 -5.1376 10.8821
24 1 4.3065 -6.4014 10.7502
25 1 4.4635 -4.0294 11.2290
26 1 2.5205 -5.2866 11.9534
27 7 1.4923 -4.5547 6.7603
28 6 1.3869 -2.1087 1.3407
29 1 -0.3633 0.6775 0.7727
30 1 -0.3633 0.3304 -0.9732
31 1 -0.3633 -1.0079 0.2004
32 1 1.8934 -0.5138 -0.8899
33 1 1.6766 1.9563 -0.8901
34 1 1.6766 1.9564 0.8899
35 1 3.1300 1.4426 0.0005
36 1 2.1686 -0.3400 3.3657
37 1 2.0301 1.1234 2.3620
38 1 -0.0290 0.5920 3.4503
39 1 4.0245 0.0978 1.0689
40 1 3.8095 -1.4874 0.2888
41 1 3.8025 -0.9847 3.2998
42 1 5.1590 -1.6698 2.3725
43 1 3.7302 -3.4257 3.4799
44 1 3.7884 -3.5894 1.7059
45 1 2.7282 -4.0487 4.5617
46 1 -0.8154 -4.4866 4.3550
47 1 -2.2365 -5.2837 6.2264
48 1 -1.2059 -5.5953 8.4620
49 1 4.2509 -3.8437 8.4622
50 1 1.5663 -2.6615 0.4186
51 1 0.3143 -1.9994 1.5011
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881145238.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:42
Heat of formation + Delta-G solvation = -25.644328 kcal
Electronic energy + Delta-G solvation = -32410.374522 eV
Core-core repulsion = 28310.415721 eV
Total energy + Delta-G solvation = -4099.958801 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.83482 -39.29109 -37.69751 -36.10711 -35.05876 -34.23607 -33.21298 -32.40199
-30.43697 -30.15813 -28.98508 -27.68164 -25.97828 -25.56796 -24.82567 -23.51045
-21.84889 -21.52332 -20.92171 -19.31969 -18.38387 -18.13375 -17.37868 -17.26259
-16.43173 -16.02474 -15.41642 -14.95093 -14.76246 -14.61295 -14.53395 -14.24028
-14.01986 -13.82138 -13.50525 -13.23765 -13.07405 -12.87092 -12.83743 -12.47827
-12.44233 -12.21332 -12.10493 -11.92048 -11.75004 -11.45631 -11.31885 -11.24514
-11.02873 -10.97773 -10.84802 -10.60480 -10.53108 -10.28269 -10.17180 -10.08092
-9.76745 -9.60764 -9.16229 -8.86104 -8.41966 -7.97967 -7.60333 -6.99626
-6.41883 -4.44905 2.74709 2.91914 2.99558 3.09726 3.13428 3.29198
3.76059 3.96988 4.17121 4.21544 4.47598 4.59719 4.77239 4.80881
4.83772 4.95175 5.05577 5.15276 5.21334 5.33916 5.38901 5.46145
5.57920 5.60270 5.66019 5.71164 5.74110 5.80474 5.86347 5.88245
5.95286 5.97169 6.04998 6.10717 6.16876 6.23258 6.35548 6.49088
6.52054 6.64826 6.84452 6.87295 7.07105 7.13134 7.27624 7.58386
7.67519 7.73933 7.98305 8.12107 8.23817 8.49238 8.75247 8.96987
9.14130 10.10116 10.34689
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015643 B = 0.003008 C = 0.002745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.512929 B = 9305.794442 C =10196.658664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.079 4.079
3 C -0.150 4.150
4 C -0.066 4.066
5 C 0.084 3.916
6 O -0.556 6.556
7 C -0.109 4.109
8 C -0.140 4.140
9 C 0.107 3.893
10 N -0.628 5.628
11 C 0.712 3.288
12 O -0.561 6.561
13 N -0.661 5.661
14 C 0.372 3.628
15 C -0.314 4.314
16 C -0.051 4.051
17 C -0.292 4.292
18 C 0.283 3.717
19 C -0.440 4.440
20 H 0.084 0.916
21 C 0.074 3.926
22 N -0.727 5.727
23 Si 0.906 3.094
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.262 1.262
27 N -0.512 5.512
28 C 0.143 3.857
29 H 0.074 0.926
30 H 0.041 0.959
31 H 0.060 0.940
32 H 0.067 0.933
33 H 0.052 0.948
34 H 0.058 0.942
35 H 0.053 0.947
36 H 0.046 0.954
37 H 0.044 0.956
38 H 0.373 0.627
39 H 0.067 0.933
40 H 0.069 0.931
41 H 0.072 0.928
42 H 0.075 0.925
43 H 0.081 0.919
44 H 0.068 0.932
45 H 0.400 0.600
46 H 0.142 0.858
47 H 0.097 0.903
48 H 0.098 0.902
49 H 0.269 0.731
50 H 0.057 0.943
51 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.563 9.563 -15.202 18.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.098 4.098
3 C -0.207 4.207
4 C -0.067 4.067
5 C 0.007 3.993
6 O -0.361 6.361
7 C -0.146 4.146
8 C -0.178 4.178
9 C -0.017 4.017
10 N -0.366 5.366
11 C 0.413 3.587
12 O -0.437 6.437
13 N -0.310 5.310
14 C 0.137 3.863
15 C -0.338 4.338
16 C -0.076 4.076
17 C -0.315 4.315
18 C 0.156 3.844
19 C -0.472 4.472
20 H 0.102 0.898
21 C -0.150 4.150
22 N -0.349 5.349
23 Si 0.730 3.270
24 H -0.196 1.196
25 H -0.203 1.203
26 H -0.186 1.186
27 N -0.231 5.231
28 C 0.020 3.980
29 H 0.093 0.907
30 H 0.060 0.940
31 H 0.079 0.921
32 H 0.085 0.915
33 H 0.071 0.929
34 H 0.077 0.923
35 H 0.072 0.928
36 H 0.065 0.935
37 H 0.062 0.938
38 H 0.220 0.780
39 H 0.086 0.914
40 H 0.088 0.912
41 H 0.090 0.910
42 H 0.094 0.906
43 H 0.099 0.901
44 H 0.086 0.914
45 H 0.237 0.763
46 H 0.160 0.840
47 H 0.116 0.884
48 H 0.116 0.884
49 H 0.080 0.920
50 H 0.075 0.925
51 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 4.795 9.513 -15.739 19.005
hybrid contribution 0.326 0.022 1.213 1.256
sum 5.120 9.535 -14.526 18.114
Atomic orbital electron populations
1.21987 0.94254 1.03364 1.00995 1.21020 0.96810 0.95641 0.96292
1.21970 1.00637 0.96259 1.01813 1.21060 0.95152 0.95617 0.94852
1.22249 0.82388 0.97810 0.96894 1.86559 1.21339 1.77276 1.50882
1.21586 0.94018 1.00926 0.98104 1.22013 1.00294 0.96568 0.98911
1.21650 0.80500 0.97118 1.02389 1.47250 1.05566 1.58695 1.25104
1.15655 0.85094 0.78349 0.79552 1.90766 1.11716 1.62960 1.78232
1.42432 1.10396 1.61313 1.16835 1.18237 0.87541 0.93576 0.86926
1.21943 0.94132 1.15926 1.01846 1.20847 0.97532 0.96041 0.93132
1.21707 0.96823 1.15894 0.97081 1.18141 0.87542 0.87640 0.91097
1.19530 0.96518 1.35687 0.95446 0.89761 1.25999 0.97699 0.93500
0.97785 1.70086 1.09762 1.23654 1.31412 0.86352 0.79579 0.78769
0.82291 1.19556 1.20309 1.18575 1.67952 1.37694 1.21133 0.96272
1.21606 1.00402 0.88999 0.86948 0.90701 0.94016 0.92131 0.91489
0.92867 0.92260 0.92809 0.93547 0.93770 0.78011 0.91393 0.91229
0.90972 0.90592 0.90097 0.91424 0.76295 0.84034 0.88447 0.88370
0.91952 0.92502 0.87094
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.54 8.06 37.16 0.30 -1.25 16
2 C -0.08 -0.72 2.29 -90.62 -0.21 -0.92 16
3 C -0.15 -1.18 8.42 37.16 0.31 -0.87 16
4 C -0.07 -0.68 0.29 -154.16 -0.04 -0.72 16
5 C 0.08 0.96 5.24 37.16 0.19 1.16 16
6 O -0.56 -7.10 9.67 -35.23 -0.34 -7.45 16
7 C -0.11 -0.93 4.53 -26.69 -0.12 -1.05 16
8 C -0.14 -1.33 5.75 -26.61 -0.15 -1.48 16
9 C 0.11 1.23 6.43 -3.71 -0.02 1.21 16
10 N -0.63 -9.25 2.54 -178.24 -0.45 -9.70 16
11 C 0.71 13.97 8.20 -86.92 -0.71 13.25 16
12 O -0.56 -12.74 12.39 5.30 0.07 -12.68 16
13 N -0.66 -13.95 5.32 -15.79 -0.08 -14.04 16
14 C 0.37 9.49 7.52 -155.00 -1.16 8.33 16
15 C -0.31 -7.96 8.92 -38.89 -0.35 -8.30 16
16 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16
17 C -0.29 -7.53 9.83 -38.66 -0.38 -7.91 16
18 C 0.28 7.91 6.53 -85.00 -0.55 7.36 16
19 C -0.44 -11.88 9.13 -37.73 -0.34 -12.22 16
20 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16
21 C 0.07 1.89 5.48 -17.35 -0.10 1.79 16
22 N -0.73 -18.99 11.54 55.55 0.64 -18.35 16
23 Si 0.91 18.58 29.56 -169.99 -5.03 13.56 16
24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16
26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16
27 N -0.51 -14.18 7.97 -10.26 -0.08 -14.26 16
28 C 0.14 1.88 4.25 -3.48 -0.01 1.86 16
29 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16
30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.06 0.72 5.81 -51.93 -0.30 0.42 16
32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.06 0.50 6.15 -51.93 -0.32 0.18 16
35 H 0.05 0.38 6.62 -51.92 -0.34 0.04 16
36 H 0.05 0.62 5.79 -51.93 -0.30 0.32 16
37 H 0.04 0.43 5.86 -51.93 -0.30 0.13 16
38 H 0.37 3.80 9.12 45.56 0.42 4.22 16
39 H 0.07 0.51 6.59 -51.93 -0.34 0.17 16
40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16
42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.08 0.99 5.57 -51.93 -0.29 0.70 16
44 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16
45 H 0.40 7.64 6.28 -40.82 -0.26 7.38 16
46 H 0.14 3.60 5.08 -53.30 -0.27 3.33 16
47 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16
48 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16
49 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16
50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
51 H 0.11 1.77 4.55 -51.93 -0.24 1.53 16
LS Contribution 380.37 15.07 5.73 5.73
Total: -1.00 -32.33 380.37 -9.85 -42.18
By element:
Atomic # 1 Polarization: 22.96 SS G_CDS: -6.54 Total: 16.41 kcal
Atomic # 6 Polarization: 2.35 SS G_CDS: -3.76 Total: -1.41 kcal
Atomic # 7 Polarization: -56.37 SS G_CDS: 0.02 Total: -56.35 kcal
Atomic # 8 Polarization: -19.85 SS G_CDS: -0.27 Total: -20.12 kcal
Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.33 -9.85 -42.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881145238.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.531 kcal
(2) G-P(sol) polarization free energy of solvation -32.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds