Wall clock time and date at job start Wed Apr 1 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46722 * 2 1 4 4 C 1.53002 * 109.47102 * 119.99594 * 2 1 3 5 5 C 1.53002 * 109.49888 * 292.70886 * 4 2 1 6 6 O 1.42901 * 109.47403 * 67.97643 * 5 4 2 7 7 C 1.53039 * 109.49844 * 172.64304 * 4 2 1 8 8 C 1.53042 * 109.53723 * 178.68849 * 7 4 2 9 9 C 1.53188 * 109.31677 * 61.35895 * 8 7 4 10 10 N 1.46928 * 108.77590 * 305.37113 * 9 8 7 11 11 C 1.34777 * 120.62437 * 233.58140 * 10 9 8 12 12 O 1.21579 * 120.00016 * 185.15109 * 11 10 9 13 13 N 1.34775 * 120.00466 * 5.15709 * 11 10 9 14 14 C 1.39241 * 120.00111 * 174.21990 * 13 11 10 15 15 C 1.39682 * 119.57700 * 20.59546 * 14 13 11 16 16 C 1.38648 * 119.49786 * 179.76850 * 15 14 13 17 17 C 1.38354 * 118.66860 * 0.49259 * 16 15 14 18 18 C 1.40573 * 119.13028 * 359.75384 * 17 16 15 19 19 C 1.41337 * 119.78663 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99978 * 6.23076 * 19 18 17 21 21 C 1.40027 * 119.99954 * 186.22062 * 19 18 17 22 22 N 1.30737 * 119.99959 * 6.20007 * 21 19 18 23 23 Si 1.86803 * 119.99783 * 186.19360 * 21 19 18 24 24 H 1.48498 * 109.46911 * 94.99703 * 23 21 19 25 25 H 1.48495 * 109.46914 * 214.99436 * 23 21 19 26 26 H 1.48501 * 109.47414 * 334.99883 * 23 21 19 27 27 N 1.31904 * 119.57715 * 200.86496 * 14 13 11 28 28 C 1.46923 * 118.74217 * 53.85913 * 10 9 8 29 29 H 1.08995 * 109.47081 * 311.24450 * 1 2 3 30 30 H 1.09005 * 109.46570 * 71.24827 * 1 2 3 31 31 H 1.08996 * 109.47170 * 191.24294 * 1 2 3 32 32 H 1.08996 * 109.47551 * 240.00156 * 2 1 3 33 33 H 1.09000 * 109.46903 * 299.99369 * 3 2 1 34 34 H 1.08994 * 109.47387 * 60.00135 * 3 2 1 35 35 H 1.09009 * 109.46929 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47271 * 187.98481 * 5 4 2 37 37 H 1.09003 * 109.46676 * 307.97644 * 5 4 2 38 38 H 0.96694 * 114.00263 * 179.97438 * 6 5 4 39 39 H 1.08990 * 109.46097 * 58.66183 * 7 4 2 40 40 H 1.09006 * 109.44338 * 298.69623 * 7 4 2 41 41 H 1.08999 * 109.49449 * 301.40724 * 8 7 4 42 42 H 1.09002 * 109.52104 * 181.33211 * 8 7 4 43 43 H 1.08993 * 109.58778 * 185.57794 * 9 8 7 44 44 H 1.09008 * 109.58343 * 65.15622 * 9 8 7 45 45 H 0.97000 * 119.99978 * 353.94168 * 13 11 10 46 46 H 1.07995 * 120.25346 * 0.02562 * 15 14 13 47 47 H 1.07997 * 120.66664 * 180.24285 * 16 15 14 48 48 H 1.08002 * 120.43317 * 179.76512 * 17 16 15 49 49 H 0.97002 * 120.00041 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.58713 * 65.92461 * 28 10 9 51 51 H 1.09000 * 109.58830 * 186.35753 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6853 0.0976 2.4922 6 8 0.2685 0.0913 2.6785 7 6 3.5592 -0.8835 1.1610 8 6 4.0743 -1.5756 2.4251 9 6 3.4447 -2.9679 2.5329 10 7 1.9829 -2.8319 2.4723 11 6 1.2034 -3.3653 3.4337 12 8 -0.0070 -3.3279 3.3251 13 7 1.7654 -3.9400 4.5155 14 6 0.9636 -4.3829 5.5641 15 6 -0.3916 -4.6342 5.3373 16 6 -1.1874 -5.0798 6.3815 17 6 -0.6117 -5.2531 7.6276 18 6 0.7569 -4.9781 7.7934 19 6 1.3591 -5.1498 9.0605 20 1 0.7951 -5.5858 9.8718 21 6 2.6870 -4.7547 9.2638 22 7 3.3311 -4.1177 8.3212 23 14 3.5380 -5.1376 10.8821 24 1 4.3065 -6.4014 10.7502 25 1 4.4635 -4.0294 11.2290 26 1 2.5205 -5.2866 11.9534 27 7 1.4923 -4.5547 6.7603 28 6 1.3869 -2.1087 1.3407 29 1 -0.3633 0.6775 0.7727 30 1 -0.3633 0.3304 -0.9732 31 1 -0.3633 -1.0079 0.2004 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 0.0005 36 1 2.1686 -0.3400 3.3657 37 1 2.0301 1.1234 2.3620 38 1 -0.0290 0.5920 3.4503 39 1 4.0245 0.0978 1.0689 40 1 3.8095 -1.4874 0.2888 41 1 3.8025 -0.9847 3.2998 42 1 5.1590 -1.6698 2.3725 43 1 3.7302 -3.4257 3.4799 44 1 3.7884 -3.5894 1.7059 45 1 2.7282 -4.0487 4.5617 46 1 -0.8154 -4.4866 4.3550 47 1 -2.2365 -5.2837 6.2264 48 1 -1.2059 -5.5953 8.4620 49 1 4.2509 -3.8437 8.4622 50 1 1.5663 -2.6615 0.4186 51 1 0.3143 -1.9994 1.5011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:41 Heat of formation + Delta-G solvation = -45.871210 kcal Electronic energy + Delta-G solvation = -32411.251625 eV Core-core repulsion = 28310.415721 eV Total energy + Delta-G solvation = -4100.835905 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08300 -40.67894 -39.42917 -37.21501 -36.10040 -35.95638 -35.04012 -33.44009 -32.33005 -31.38345 -30.63033 -28.55086 -27.42833 -26.86257 -26.05771 -24.43868 -23.49530 -23.36895 -22.07948 -20.76914 -19.56954 -19.23678 -19.23173 -18.30038 -17.99024 -17.16652 -16.92808 -16.37377 -16.35651 -16.18620 -15.80568 -15.52481 -15.26161 -14.88502 -14.70035 -14.49705 -14.39454 -14.17543 -13.93066 -13.83722 -13.76939 -13.33738 -13.24401 -12.94340 -12.93302 -12.89966 -12.67596 -12.58017 -12.55042 -12.28502 -12.05879 -11.83353 -11.73736 -11.58355 -11.38154 -11.10460 -11.02525 -10.99737 -10.63350 -10.52088 -9.98452 -9.66583 -9.59052 -8.89536 -8.33836 -6.48718 0.84605 1.12514 1.42681 1.50503 1.55143 1.57095 2.15901 2.24800 2.82221 2.88548 3.33667 3.59393 3.79450 3.90164 3.94382 4.00243 4.09731 4.26559 4.28481 4.34267 4.41721 4.50637 4.56972 4.61001 4.65148 4.70946 4.79452 4.86425 4.87691 4.90294 4.92559 4.97228 5.00911 5.06678 5.09586 5.12570 5.19000 5.24346 5.25958 5.33324 5.39892 5.54327 5.58168 5.66673 5.70440 5.72344 5.84163 6.02384 6.19661 6.30722 6.73907 6.85675 6.87144 7.01080 7.53643 8.10810 8.45721 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003008 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.512929 B = 9305.794442 C =10196.658664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.060 4.060 5 C 0.083 3.917 6 O -0.574 6.574 7 C -0.104 4.104 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.615 5.615 11 C 0.707 3.293 12 O -0.597 6.597 13 N -0.658 5.658 14 C 0.365 3.635 15 C -0.331 4.331 16 C -0.049 4.049 17 C -0.311 4.311 18 C 0.249 3.751 19 C -0.468 4.468 20 H 0.091 0.909 21 C 0.029 3.971 22 N -0.756 5.756 23 Si 0.989 3.011 24 H -0.264 1.264 25 H -0.267 1.267 26 H -0.257 1.257 27 N -0.536 5.536 28 C 0.140 3.860 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.380 0.620 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.407 0.593 46 H 0.140 0.860 47 H 0.128 0.872 48 H 0.113 0.887 49 H 0.279 0.721 50 H 0.075 0.925 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 10.372 -16.150 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.061 4.061 5 C 0.006 3.994 6 O -0.380 6.380 7 C -0.141 4.141 8 C -0.172 4.172 9 C -0.023 4.023 10 N -0.352 5.352 11 C 0.408 3.592 12 O -0.476 6.476 13 N -0.308 5.308 14 C 0.129 3.871 15 C -0.355 4.355 16 C -0.074 4.074 17 C -0.334 4.334 18 C 0.122 3.878 19 C -0.500 4.500 20 H 0.109 0.891 21 C -0.193 4.193 22 N -0.378 5.378 23 Si 0.809 3.191 24 H -0.189 1.189 25 H -0.192 1.192 26 H -0.180 1.180 27 N -0.256 5.256 28 C 0.018 3.982 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.246 0.754 46 H 0.158 0.842 47 H 0.146 0.854 48 H 0.131 0.869 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.138 10.349 -16.743 20.937 hybrid contribution -0.419 -0.189 1.413 1.486 sum 6.719 10.160 -15.330 19.580 Atomic orbital electron populations 1.21946 0.95636 1.01713 1.01116 1.21011 0.95571 0.96679 0.96000 1.21937 1.01554 0.94960 1.01854 1.21075 0.96551 0.93505 0.94972 1.22355 0.81487 0.99020 0.96576 1.86558 1.22398 1.77682 1.51377 1.21611 0.92086 1.02294 0.98099 1.21994 1.01713 0.94698 0.98833 1.21966 0.78251 0.99222 1.02889 1.47300 1.06799 1.57206 1.23893 1.15843 0.85055 0.78357 0.79898 1.90719 1.13509 1.64340 1.79067 1.42350 1.10478 1.61498 1.16442 1.18548 0.88298 0.92916 0.87332 1.22116 0.94552 1.16721 1.02160 1.21186 0.98960 0.94784 0.92424 1.21886 0.96511 1.16823 0.98135 1.18667 0.88785 0.88397 0.91941 1.19914 0.97980 1.36608 0.95511 0.89106 1.26938 0.97748 0.92773 1.01842 1.70159 1.10472 1.23606 1.33573 0.85104 0.78225 0.78786 0.76990 1.18899 1.19196 1.18041 1.67988 1.38274 1.22389 0.96912 1.21754 0.98957 0.90901 0.86615 0.92057 0.92811 0.94236 0.89897 0.92031 0.93086 0.91257 0.95981 0.91732 0.77245 0.89383 0.89310 0.92849 0.87862 0.91298 0.88700 0.75386 0.84237 0.85401 0.86924 0.91002 0.90664 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.06 71.98 0.58 -2.39 16 2 C -0.07 -1.17 2.29 -10.79 -0.02 -1.20 16 3 C -0.15 -1.87 8.42 71.98 0.61 -1.26 16 4 C -0.06 -1.14 0.29 -51.96 -0.01 -1.15 16 5 C 0.08 1.87 5.24 71.98 0.38 2.25 16 6 O -0.57 -15.31 9.67 -148.98 -1.44 -16.75 16 7 C -0.10 -1.42 4.53 30.62 0.14 -1.28 16 8 C -0.13 -2.24 5.75 30.67 0.18 -2.06 16 9 C 0.10 2.14 6.43 86.36 0.56 2.70 16 10 N -0.62 -18.11 2.54 -836.08 -2.13 -20.24 16 11 C 0.71 28.71 8.20 179.05 1.47 30.18 16 12 O -0.60 -28.45 12.39 -3.97 -0.05 -28.50 16 13 N -0.66 -28.84 5.32 -322.13 -1.72 -30.55 16 14 C 0.37 19.36 7.52 133.26 1.00 20.36 16 15 C -0.33 -17.37 8.92 22.72 0.20 -17.17 16 16 C -0.05 -2.45 10.15 22.40 0.23 -2.22 16 17 C -0.31 -16.41 9.83 22.87 0.22 -16.18 16 18 C 0.25 14.35 6.53 40.19 0.26 14.61 16 19 C -0.47 -25.78 9.13 23.47 0.21 -25.57 16 20 H 0.09 4.68 7.85 -2.91 -0.02 4.65 16 21 C 0.03 1.46 5.48 85.29 0.47 1.93 16 22 N -0.76 -39.93 11.54 21.84 0.25 -39.67 16 23 Si 0.99 37.79 29.56 68.60 2.03 39.82 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 27 N -0.54 -30.75 7.97 -186.37 -1.49 -32.23 16 28 C 0.14 3.60 4.25 86.51 0.37 3.97 16 29 H 0.06 1.40 6.18 -2.39 -0.01 1.38 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.04 0.96 5.81 -2.39 -0.01 0.94 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.74 6.15 -2.39 -0.01 0.73 16 35 H 0.07 0.69 6.62 -2.38 -0.02 0.67 16 36 H 0.02 0.60 5.79 -2.39 -0.01 0.59 16 37 H 0.06 1.18 5.86 -2.39 -0.01 1.17 16 38 H 0.38 8.34 9.12 -74.06 -0.68 7.66 16 39 H 0.09 0.93 6.59 -2.39 -0.02 0.92 16 40 H 0.09 0.95 8.14 -2.38 -0.02 0.94 16 41 H 0.05 1.12 6.17 -2.39 -0.01 1.11 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.67 5.57 -2.39 -0.01 1.66 16 44 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.41 16.12 6.28 -92.71 -0.58 15.54 16 46 H 0.14 7.40 5.08 -15.68 -0.08 7.32 16 47 H 0.13 5.42 8.06 -2.91 -0.02 5.40 16 48 H 0.11 5.42 8.06 -2.91 -0.02 5.40 16 49 H 0.28 13.18 8.29 -92.71 -0.77 12.41 16 50 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.08 2.61 4.55 -2.39 -0.01 2.60 16 Total: -1.00 -73.28 380.37 1.96 -71.31 By element: Atomic # 1 Polarization: 51.63 SS G_CDS: -0.33 Total: 51.29 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.83 Total: 5.52 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.08 Total: -122.70 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.49 Total: -45.24 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -73.28 1.96 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.443 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds