Wall clock time and date at job start Wed Apr 1 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46861 * 2 1 4 4 C 1.50694 * 109.47061 * 120.00022 * 2 1 3 5 5 C 1.35315 * 126.66772 * 120.00516 * 4 2 1 6 6 C 1.42271 * 103.92684 * 179.97438 * 5 4 2 7 7 C 1.48326 * 126.93767 * 179.97438 * 6 5 4 8 8 O 1.21493 * 120.00358 * 353.93297 * 7 6 5 9 9 N 1.34776 * 119.99730 * 173.93529 * 7 6 5 10 10 C 1.49733 * 122.75839 * 4.87941 * 9 7 6 11 11 C 1.53160 * 105.59639 * 111.58781 * 10 9 7 12 12 C 1.50970 * 111.95607 * 99.83830 * 11 10 9 13 13 H 1.08990 * 109.52345 * 58.23959 * 12 11 10 14 14 C 1.53589 * 111.30355 * 178.50565 * 12 11 10 15 15 N 1.47173 * 105.65068 * 150.29053 * 14 12 11 16 16 C 1.36935 * 126.09668 * 149.76194 * 15 14 12 17 17 H 1.07991 * 120.00574 * 351.70388 * 16 15 14 18 18 C 1.38815 * 119.99353 * 171.70826 * 16 15 14 19 19 N 1.31621 * 120.00577 * 345.74938 * 18 16 15 20 20 Si 1.86805 * 119.99799 * 165.75260 * 18 16 15 21 21 H 1.48502 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47064 * 119.99540 * 20 18 16 23 23 H 1.48503 * 109.47283 * 239.99847 * 20 18 16 24 24 C 1.46774 * 107.79859 * 329.73464 * 15 14 12 25 25 C 1.53836 * 107.91297 * 20.29779 * 24 15 14 26 26 H 1.08995 * 111.54835 * 118.11047 * 25 24 15 27 27 C 1.51858 * 109.23381 * 241.13252 * 25 24 15 28 28 C 1.43639 * 122.75557 * 184.58576 * 9 7 6 29 29 N 1.30985 * 106.11910 * 0.22180 * 6 5 4 30 30 O 1.20902 * 111.43941 * 359.59889 * 29 6 5 31 31 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47179 * 299.99977 * 1 2 3 33 33 H 1.08991 * 109.47174 * 59.99966 * 1 2 3 34 34 H 1.08995 * 109.46814 * 240.00015 * 2 1 3 35 35 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47298 * 300.00019 * 3 2 1 37 37 H 1.09007 * 109.47206 * 60.00039 * 3 2 1 38 38 H 1.08006 * 128.03284 * 359.95483 * 5 4 2 39 39 H 1.09000 * 110.20926 * 230.60895 * 10 9 7 40 40 H 1.08997 * 110.20911 * 352.43501 * 10 9 7 41 41 H 1.09006 * 108.98565 * 220.46822 * 11 10 9 42 42 H 1.09001 * 108.99158 * 339.27873 * 11 10 9 43 43 H 1.09003 * 110.20831 * 269.33008 * 14 12 11 44 44 H 1.08995 * 110.21357 * 31.23674 * 14 12 11 45 45 H 0.96998 * 119.99852 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.78052 * 260.68843 * 24 15 14 47 47 H 1.09004 * 109.77752 * 139.91019 * 24 15 14 48 48 H 1.09000 * 108.91752 * 320.65327 * 27 25 24 49 49 H 1.08999 * 108.91635 * 79.29213 * 27 25 24 50 50 H 1.08993 * 108.42804 * 359.35861 * 28 9 7 51 51 H 1.09005 * 108.42413 * 116.61969 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8134 -1.8148 1.2636 6 6 2.9920 -2.0664 2.6524 7 6 3.7716 -3.1693 3.2655 8 8 4.2493 -4.0387 2.5640 9 7 3.9501 -3.2071 4.6009 10 6 3.3021 -2.2305 5.5328 11 6 2.2780 -3.0416 6.3323 12 6 2.7975 -3.4157 7.6995 13 1 3.0578 -2.5118 8.2501 14 6 1.7457 -4.1962 8.5017 15 7 2.5065 -5.0844 9.3952 16 6 2.1092 -5.5174 10.6320 17 1 1.2237 -5.1029 11.0905 18 6 2.8448 -6.4891 11.2965 19 7 3.7459 -7.1930 10.6445 20 14 2.5559 -6.7979 13.1160 21 1 1.4980 -5.8811 13.6117 22 1 2.1262 -8.2051 13.3172 23 1 3.8141 -6.5524 13.8657 24 6 3.7667 -5.4238 8.7236 25 6 4.0281 -4.3609 7.6428 26 1 4.9507 -3.8132 7.8348 27 6 4.0682 -5.0315 6.2809 28 6 4.7726 -4.1912 5.2475 29 7 2.3245 -1.1305 3.2803 30 8 1.7929 -0.3707 2.5045 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.2091 -2.3754 0.4294 39 1 4.0460 -1.7985 6.2022 40 1 2.8035 -1.4438 4.9667 41 1 1.3696 -2.4503 6.4478 42 1 2.0403 -3.9526 5.7831 43 1 1.1323 -3.5101 9.0859 44 1 1.1196 -4.7837 7.8303 45 1 4.2596 -7.8723 11.1088 46 1 3.6850 -6.4076 8.2613 47 1 4.5821 -5.4226 9.4471 48 1 4.5852 -5.9867 6.3724 49 1 3.0468 -5.2136 5.9466 50 1 5.1788 -4.8556 4.4849 51 1 5.6045 -3.6803 5.7322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946699845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:42 Heat of formation + Delta-G solvation = 59.383759 kcal Electronic energy + Delta-G solvation = -31339.643425 eV Core-core repulsion = 27243.371718 eV Total energy + Delta-G solvation = -4096.271707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.36925 -40.36871 -38.56574 -36.58254 -35.91835 -34.32242 -33.08457 -32.29955 -31.07604 -30.68571 -27.85701 -27.70670 -27.31782 -25.39634 -24.08469 -23.62629 -22.85955 -22.72728 -21.49580 -20.24685 -19.20910 -18.25808 -18.03567 -17.57668 -17.19663 -16.81819 -16.08993 -15.57974 -15.45711 -14.84814 -14.76609 -14.52257 -14.06354 -13.93872 -13.79914 -13.76998 -13.52214 -13.28044 -12.80655 -12.72486 -12.66182 -12.35241 -12.09747 -11.94104 -11.81796 -11.66712 -11.53378 -11.45575 -11.16572 -10.96871 -10.78101 -10.73274 -10.68287 -10.59729 -10.36117 -9.99147 -9.83387 -9.79750 -9.75859 -9.57855 -9.52486 -8.69744 -8.53385 -6.80742 -5.74224 -3.03582 0.85618 1.38871 2.53470 2.76097 2.99980 3.40323 3.46697 3.49092 3.65799 3.94239 4.33209 4.50012 4.50669 4.53728 4.67861 4.82973 5.00483 5.04858 5.07159 5.10883 5.17930 5.27820 5.28865 5.31902 5.37186 5.42979 5.47512 5.54791 5.56523 5.61916 5.68757 5.72016 5.82098 5.84514 5.94433 6.02315 6.13080 6.21431 6.30335 6.34659 6.46322 6.58863 6.64652 6.73205 6.84921 7.04402 7.25170 7.52419 7.63566 7.70647 7.80529 7.98175 8.27521 9.21551 9.83998 10.53429 11.39686 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.002176 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.254578 B =12864.133049 C =13563.393687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.024 4.024 5 C -0.183 4.183 6 C -0.013 4.013 7 C 0.601 3.399 8 O -0.529 6.529 9 N -0.590 5.590 10 C 0.087 3.913 11 C -0.125 4.125 12 C -0.098 4.098 13 H 0.064 0.936 14 C 0.140 3.860 15 N -0.599 5.599 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.178 3.822 25 C -0.103 4.103 26 H 0.068 0.932 27 C -0.126 4.126 28 C 0.109 3.891 29 N -0.326 5.326 30 O 0.117 5.883 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.180 0.820 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.013 0.987 45 H 0.252 0.748 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 17.538 -23.290 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.087 4.087 5 C -0.205 4.205 6 C -0.172 4.172 7 C 0.387 3.613 8 O -0.404 6.404 9 N -0.322 5.322 10 C -0.035 4.035 11 C -0.163 4.163 12 C -0.118 4.118 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.324 5.324 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.561 5.561 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.053 3.947 25 C -0.123 4.123 26 H 0.086 0.914 27 C -0.164 4.164 28 C -0.014 4.014 29 N -0.030 5.030 30 O 0.045 5.955 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.197 0.803 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.304 17.124 -22.195 28.128 hybrid contribution 0.171 -0.709 0.457 0.860 sum -2.132 16.415 -21.738 27.323 Atomic orbital electron populations 1.21909 0.92908 1.02950 1.03181 1.19835 0.96914 0.96180 0.90214 1.21905 1.01710 0.94098 1.03183 1.24478 0.99927 0.97082 0.87213 1.22422 1.02868 0.98695 0.96507 1.23460 1.02619 0.98297 0.92796 1.16771 0.79652 0.83311 0.81597 1.90790 1.50346 1.37991 1.61280 1.47907 1.48378 1.31100 1.04831 1.23126 0.96181 0.91998 0.92146 1.21671 0.98007 1.00378 0.96227 1.21799 0.96881 0.98608 0.94483 0.91780 1.21267 0.93121 0.92313 0.91997 1.44374 1.16568 1.55105 1.16331 1.19055 1.09404 1.16552 0.90720 0.90518 1.24796 0.99697 0.97382 0.98589 1.70008 1.27674 1.24286 1.34181 0.86122 0.77342 0.77502 0.85278 1.20454 1.21873 1.21681 1.21049 0.89395 0.92901 0.91400 1.22244 0.97033 0.97545 0.95470 0.91394 1.21469 1.01883 0.98809 0.94259 1.20550 0.92838 0.91501 0.96513 1.74041 1.09948 1.02989 1.16010 1.84779 1.54492 1.42635 1.13569 0.91929 0.91593 0.91150 0.87700 0.92002 0.91158 0.91607 0.80293 0.90210 0.86665 0.91490 0.90832 0.94185 0.96902 0.93793 0.95000 0.92699 0.90433 0.91141 0.89941 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.18 37.16 0.34 -0.28 16 2 C -0.01 -0.05 3.34 -91.77 -0.31 -0.36 16 3 C -0.15 -0.58 9.18 37.16 0.34 -0.24 16 4 C -0.02 -0.19 5.98 -35.35 -0.21 -0.40 16 5 C -0.18 -1.78 10.91 -39.08 -0.43 -2.21 16 6 C -0.01 -0.16 6.99 -82.53 -0.58 -0.74 16 7 C 0.60 8.98 7.78 -12.11 -0.09 8.89 16 8 O -0.53 -9.15 16.48 5.37 0.09 -9.07 16 9 N -0.59 -8.40 2.67 -175.47 -0.47 -8.87 16 10 C 0.09 1.13 6.14 -2.16 -0.01 1.12 16 11 C -0.12 -1.80 4.58 -27.67 -0.13 -1.93 16 12 C -0.10 -1.68 2.61 -90.13 -0.24 -1.92 16 13 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 14 C 0.14 2.94 6.71 -3.37 -0.02 2.92 16 15 N -0.60 -15.51 3.37 -171.60 -0.58 -16.09 16 16 C -0.23 -6.48 10.25 -15.06 -0.15 -6.64 16 17 H 0.08 2.11 7.87 -52.49 -0.41 1.70 16 18 C -0.01 -0.22 5.36 -17.43 -0.09 -0.32 16 19 N -0.91 -27.23 10.84 55.49 0.60 -26.63 16 20 Si 0.91 22.31 29.58 -169.99 -5.03 17.28 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.18 4.29 5.00 -3.46 -0.02 4.27 16 25 C -0.10 -1.89 3.14 -89.56 -0.28 -2.17 16 26 H 0.07 1.17 7.76 -51.93 -0.40 0.76 16 27 C -0.13 -2.06 4.51 -28.48 -0.13 -2.19 16 28 C 0.11 1.58 5.67 -6.72 -0.04 1.54 16 29 N -0.33 -3.86 8.66 33.29 0.29 -3.57 16 30 O 0.12 1.15 11.18 17.25 0.19 1.35 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 40 H 0.12 1.44 4.25 -53.71 -0.23 1.21 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.17 5.57 -51.93 -0.29 0.89 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.01 0.29 7.96 -51.93 -0.41 -0.13 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.03 0.85 7.15 -51.93 -0.37 0.48 16 47 H 0.05 1.47 7.18 -51.93 -0.37 1.10 16 48 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 49 H 0.07 1.24 5.77 -51.93 -0.30 0.94 16 50 H 0.08 1.24 7.01 -51.93 -0.36 0.87 16 51 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -32.91 392.88 -9.17 -42.08 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.14 Total: -1.74 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.04 Total: -0.65 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.16 Total: -55.16 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.28 Total: -7.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.91 -9.17 -42.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946699845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.465 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds