Wall clock time and date at job start Wed Apr 1 2020 05:09:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46861 * 2 1
4 4 C 1.50694 * 109.47061 * 120.00022 * 2 1 3
5 5 C 1.35315 * 126.66772 * 120.00516 * 4 2 1
6 6 C 1.42271 * 103.92684 * 179.97438 * 5 4 2
7 7 C 1.48326 * 126.93767 * 179.97438 * 6 5 4
8 8 O 1.21493 * 120.00358 * 353.93297 * 7 6 5
9 9 N 1.34776 * 119.99730 * 173.93529 * 7 6 5
10 10 C 1.49733 * 122.75839 * 4.87941 * 9 7 6
11 11 C 1.53160 * 105.59639 * 111.58781 * 10 9 7
12 12 C 1.50970 * 111.95607 * 99.83830 * 11 10 9
13 13 H 1.08990 * 109.52345 * 58.23959 * 12 11 10
14 14 C 1.53589 * 111.30355 * 178.50565 * 12 11 10
15 15 N 1.47173 * 105.65068 * 150.29053 * 14 12 11
16 16 C 1.36935 * 126.09668 * 149.76194 * 15 14 12
17 17 H 1.07991 * 120.00574 * 351.70388 * 16 15 14
18 18 C 1.38815 * 119.99353 * 171.70826 * 16 15 14
19 19 N 1.31621 * 120.00577 * 345.74938 * 18 16 15
20 20 Si 1.86805 * 119.99799 * 165.75260 * 18 16 15
21 21 H 1.48502 * 109.46896 * 359.97438 * 20 18 16
22 22 H 1.48505 * 109.47064 * 119.99540 * 20 18 16
23 23 H 1.48503 * 109.47283 * 239.99847 * 20 18 16
24 24 C 1.46774 * 107.79859 * 329.73464 * 15 14 12
25 25 C 1.53836 * 107.91297 * 20.29779 * 24 15 14
26 26 H 1.08995 * 111.54835 * 118.11047 * 25 24 15
27 27 C 1.51858 * 109.23381 * 241.13252 * 25 24 15
28 28 C 1.43639 * 122.75557 * 184.58576 * 9 7 6
29 29 N 1.30985 * 106.11910 * 0.22180 * 6 5 4
30 30 O 1.20902 * 111.43941 * 359.59889 * 29 6 5
31 31 H 1.08999 * 109.46775 * 180.02562 * 1 2 3
32 32 H 1.09007 * 109.47179 * 299.99977 * 1 2 3
33 33 H 1.08991 * 109.47174 * 59.99966 * 1 2 3
34 34 H 1.08995 * 109.46814 * 240.00015 * 2 1 3
35 35 H 1.08997 * 109.47085 * 180.02562 * 3 2 1
36 36 H 1.09001 * 109.47298 * 300.00019 * 3 2 1
37 37 H 1.09007 * 109.47206 * 60.00039 * 3 2 1
38 38 H 1.08006 * 128.03284 * 359.95483 * 5 4 2
39 39 H 1.09000 * 110.20926 * 230.60895 * 10 9 7
40 40 H 1.08997 * 110.20911 * 352.43501 * 10 9 7
41 41 H 1.09006 * 108.98565 * 220.46822 * 11 10 9
42 42 H 1.09001 * 108.99158 * 339.27873 * 11 10 9
43 43 H 1.09003 * 110.20831 * 269.33008 * 14 12 11
44 44 H 1.08995 * 110.21357 * 31.23674 * 14 12 11
45 45 H 0.96998 * 119.99852 * 180.02562 * 19 18 16
46 46 H 1.09006 * 109.78052 * 260.68843 * 24 15 14
47 47 H 1.09004 * 109.77752 * 139.91019 * 24 15 14
48 48 H 1.09000 * 108.91752 * 320.65327 * 27 25 24
49 49 H 1.08999 * 108.91635 * 79.29213 * 27 25 24
50 50 H 1.08993 * 108.42804 * 359.35861 * 28 9 7
51 51 H 1.09005 * 108.42413 * 116.61969 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 1.2304
5 6 2.8134 -1.8148 1.2636
6 6 2.9920 -2.0664 2.6524
7 6 3.7716 -3.1693 3.2655
8 8 4.2493 -4.0387 2.5640
9 7 3.9501 -3.2071 4.6009
10 6 3.3021 -2.2305 5.5328
11 6 2.2780 -3.0416 6.3323
12 6 2.7975 -3.4157 7.6995
13 1 3.0578 -2.5118 8.2501
14 6 1.7457 -4.1962 8.5017
15 7 2.5065 -5.0844 9.3952
16 6 2.1092 -5.5174 10.6320
17 1 1.2237 -5.1029 11.0905
18 6 2.8448 -6.4891 11.2965
19 7 3.7459 -7.1930 10.6445
20 14 2.5559 -6.7979 13.1160
21 1 1.4980 -5.8811 13.6117
22 1 2.1262 -8.2051 13.3172
23 1 3.8141 -6.5524 13.8657
24 6 3.7667 -5.4238 8.7236
25 6 4.0281 -4.3609 7.6428
26 1 4.9507 -3.8132 7.8348
27 6 4.0682 -5.0315 6.2809
28 6 4.7726 -4.1912 5.2475
29 7 2.3245 -1.1305 3.2803
30 8 1.7929 -0.3707 2.5045
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3633 0.5138 -0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 3.1300 1.4426 -0.0005
36 1 1.6766 1.9564 -0.8900
37 1 1.6766 1.9564 0.8900
38 1 3.2091 -2.3754 0.4294
39 1 4.0460 -1.7985 6.2022
40 1 2.8035 -1.4438 4.9667
41 1 1.3696 -2.4503 6.4478
42 1 2.0403 -3.9526 5.7831
43 1 1.1323 -3.5101 9.0859
44 1 1.1196 -4.7837 7.8303
45 1 4.2596 -7.8723 11.1088
46 1 3.6850 -6.4076 8.2613
47 1 4.5821 -5.4226 9.4471
48 1 4.5852 -5.9867 6.3724
49 1 3.0468 -5.2136 5.9466
50 1 5.1788 -4.8556 4.4849
51 1 5.6045 -3.6803 5.7322
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000946699845.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:09:42
Heat of formation + Delta-G solvation = 59.383759 kcal
Electronic energy + Delta-G solvation = -31339.643425 eV
Core-core repulsion = 27243.371718 eV
Total energy + Delta-G solvation = -4096.271707 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-45.36925 -40.36871 -38.56574 -36.58254 -35.91835 -34.32242 -33.08457 -32.29955
-31.07604 -30.68571 -27.85701 -27.70670 -27.31782 -25.39634 -24.08469 -23.62629
-22.85955 -22.72728 -21.49580 -20.24685 -19.20910 -18.25808 -18.03567 -17.57668
-17.19663 -16.81819 -16.08993 -15.57974 -15.45711 -14.84814 -14.76609 -14.52257
-14.06354 -13.93872 -13.79914 -13.76998 -13.52214 -13.28044 -12.80655 -12.72486
-12.66182 -12.35241 -12.09747 -11.94104 -11.81796 -11.66712 -11.53378 -11.45575
-11.16572 -10.96871 -10.78101 -10.73274 -10.68287 -10.59729 -10.36117 -9.99147
-9.83387 -9.79750 -9.75859 -9.57855 -9.52486 -8.69744 -8.53385 -6.80742
-5.74224 -3.03582 0.85618 1.38871 2.53470 2.76097 2.99980 3.40323
3.46697 3.49092 3.65799 3.94239 4.33209 4.50012 4.50669 4.53728
4.67861 4.82973 5.00483 5.04858 5.07159 5.10883 5.17930 5.27820
5.28865 5.31902 5.37186 5.42979 5.47512 5.54791 5.56523 5.61916
5.68757 5.72016 5.82098 5.84514 5.94433 6.02315 6.13080 6.21431
6.30335 6.34659 6.46322 6.58863 6.64652 6.73205 6.84921 7.04402
7.25170 7.52419 7.63566 7.70647 7.80529 7.98175 8.27521 9.21551
9.83998 10.53429 11.39686
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.025396 B = 0.002176 C = 0.002064
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1102.254578 B =12864.133049 C =13563.393687
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.012 4.012
3 C -0.152 4.152
4 C -0.024 4.024
5 C -0.183 4.183
6 C -0.013 4.013
7 C 0.601 3.399
8 O -0.529 6.529
9 N -0.590 5.590
10 C 0.087 3.913
11 C -0.125 4.125
12 C -0.098 4.098
13 H 0.064 0.936
14 C 0.140 3.860
15 N -0.599 5.599
16 C -0.229 4.229
17 H 0.077 0.923
18 C -0.008 4.008
19 N -0.915 5.915
20 Si 0.907 3.093
21 H -0.279 1.279
22 H -0.292 1.292
23 H -0.290 1.290
24 C 0.178 3.822
25 C -0.103 4.103
26 H 0.068 0.932
27 C -0.126 4.126
28 C 0.109 3.891
29 N -0.326 5.326
30 O 0.117 5.883
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.070 0.930
34 H 0.105 0.895
35 H 0.061 0.939
36 H 0.069 0.931
37 H 0.065 0.935
38 H 0.180 0.820
39 H 0.080 0.920
40 H 0.116 0.884
41 H 0.066 0.934
42 H 0.073 0.927
43 H 0.040 0.960
44 H 0.013 0.987
45 H 0.252 0.748
46 H 0.032 0.968
47 H 0.055 0.945
48 H 0.077 0.923
49 H 0.070 0.930
50 H 0.082 0.918
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.459 17.538 -23.290 29.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.031 4.031
3 C -0.209 4.209
4 C -0.087 4.087
5 C -0.205 4.205
6 C -0.172 4.172
7 C 0.387 3.613
8 O -0.404 6.404
9 N -0.322 5.322
10 C -0.035 4.035
11 C -0.163 4.163
12 C -0.118 4.118
13 H 0.082 0.918
14 C 0.013 3.987
15 N -0.324 5.324
16 C -0.357 4.357
17 H 0.095 0.905
18 C -0.205 4.205
19 N -0.561 5.561
20 Si 0.738 3.262
21 H -0.205 1.205
22 H -0.219 1.219
23 H -0.217 1.217
24 C 0.053 3.947
25 C -0.123 4.123
26 H 0.086 0.914
27 C -0.164 4.164
28 C -0.014 4.014
29 N -0.030 5.030
30 O 0.045 5.955
31 H 0.081 0.919
32 H 0.084 0.916
33 H 0.089 0.911
34 H 0.123 0.877
35 H 0.080 0.920
36 H 0.088 0.912
37 H 0.084 0.916
38 H 0.197 0.803
39 H 0.098 0.902
40 H 0.133 0.867
41 H 0.085 0.915
42 H 0.092 0.908
43 H 0.058 0.942
44 H 0.031 0.969
45 H 0.062 0.938
46 H 0.050 0.950
47 H 0.073 0.927
48 H 0.096 0.904
49 H 0.089 0.911
50 H 0.101 0.899
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -2.304 17.124 -22.195 28.128
hybrid contribution 0.171 -0.709 0.457 0.860
sum -2.132 16.415 -21.738 27.323
Atomic orbital electron populations
1.21909 0.92908 1.02950 1.03181 1.19835 0.96914 0.96180 0.90214
1.21905 1.01710 0.94098 1.03183 1.24478 0.99927 0.97082 0.87213
1.22422 1.02868 0.98695 0.96507 1.23460 1.02619 0.98297 0.92796
1.16771 0.79652 0.83311 0.81597 1.90790 1.50346 1.37991 1.61280
1.47907 1.48378 1.31100 1.04831 1.23126 0.96181 0.91998 0.92146
1.21671 0.98007 1.00378 0.96227 1.21799 0.96881 0.98608 0.94483
0.91780 1.21267 0.93121 0.92313 0.91997 1.44374 1.16568 1.55105
1.16331 1.19055 1.09404 1.16552 0.90720 0.90518 1.24796 0.99697
0.97382 0.98589 1.70008 1.27674 1.24286 1.34181 0.86122 0.77342
0.77502 0.85278 1.20454 1.21873 1.21681 1.21049 0.89395 0.92901
0.91400 1.22244 0.97033 0.97545 0.95470 0.91394 1.21469 1.01883
0.98809 0.94259 1.20550 0.92838 0.91501 0.96513 1.74041 1.09948
1.02989 1.16010 1.84779 1.54492 1.42635 1.13569 0.91929 0.91593
0.91150 0.87700 0.92002 0.91158 0.91607 0.80293 0.90210 0.86665
0.91490 0.90832 0.94185 0.96902 0.93793 0.95000 0.92699 0.90433
0.91141 0.89941 0.91778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.63 9.18 37.16 0.34 -0.28 16
2 C -0.01 -0.05 3.34 -91.77 -0.31 -0.36 16
3 C -0.15 -0.58 9.18 37.16 0.34 -0.24 16
4 C -0.02 -0.19 5.98 -35.35 -0.21 -0.40 16
5 C -0.18 -1.78 10.91 -39.08 -0.43 -2.21 16
6 C -0.01 -0.16 6.99 -82.53 -0.58 -0.74 16
7 C 0.60 8.98 7.78 -12.11 -0.09 8.89 16
8 O -0.53 -9.15 16.48 5.37 0.09 -9.07 16
9 N -0.59 -8.40 2.67 -175.47 -0.47 -8.87 16
10 C 0.09 1.13 6.14 -2.16 -0.01 1.12 16
11 C -0.12 -1.80 4.58 -27.67 -0.13 -1.93 16
12 C -0.10 -1.68 2.61 -90.13 -0.24 -1.92 16
13 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
14 C 0.14 2.94 6.71 -3.37 -0.02 2.92 16
15 N -0.60 -15.51 3.37 -171.60 -0.58 -16.09 16
16 C -0.23 -6.48 10.25 -15.06 -0.15 -6.64 16
17 H 0.08 2.11 7.87 -52.49 -0.41 1.70 16
18 C -0.01 -0.22 5.36 -17.43 -0.09 -0.32 16
19 N -0.91 -27.23 10.84 55.49 0.60 -26.63 16
20 Si 0.91 22.31 29.58 -169.99 -5.03 17.28 16
21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 C 0.18 4.29 5.00 -3.46 -0.02 4.27 16
25 C -0.10 -1.89 3.14 -89.56 -0.28 -2.17 16
26 H 0.07 1.17 7.76 -51.93 -0.40 0.76 16
27 C -0.13 -2.06 4.51 -28.48 -0.13 -2.19 16
28 C 0.11 1.58 5.67 -6.72 -0.04 1.54 16
29 N -0.33 -3.86 8.66 33.29 0.29 -3.57 16
30 O 0.12 1.15 11.18 17.25 0.19 1.35 16
31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16
33 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16
34 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16
35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
36 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16
37 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16
38 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16
39 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16
40 H 0.12 1.44 4.25 -53.71 -0.23 1.21 16
41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
42 H 0.07 1.17 5.57 -51.93 -0.29 0.89 16
43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
44 H 0.01 0.29 7.96 -51.93 -0.41 -0.13 16
45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
46 H 0.03 0.85 7.15 -51.93 -0.37 0.48 16
47 H 0.05 1.47 7.18 -51.93 -0.37 1.10 16
48 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16
49 H 0.07 1.24 5.77 -51.93 -0.30 0.94 16
50 H 0.08 1.24 7.01 -51.93 -0.36 0.87 16
51 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16
LS Contribution 392.88 15.07 5.92 5.92
Total: -1.00 -32.91 392.88 -9.17 -42.08
By element:
Atomic # 1 Polarization: 6.40 SS G_CDS: -8.14 Total: -1.74 kcal
Atomic # 6 Polarization: 1.39 SS G_CDS: -2.04 Total: -0.65 kcal
Atomic # 7 Polarization: -55.01 SS G_CDS: -0.16 Total: -55.16 kcal
Atomic # 8 Polarization: -8.00 SS G_CDS: 0.28 Total: -7.72 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -32.91 -9.17 -42.08 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000946699845.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.465 kcal
(2) G-P(sol) polarization free energy of solvation -32.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.384 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds