Wall clock time and date at job start Wed Apr 1 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46861 * 2 1 4 4 C 1.50694 * 109.47061 * 120.00022 * 2 1 3 5 5 C 1.35315 * 126.66772 * 120.00516 * 4 2 1 6 6 C 1.42271 * 103.92684 * 179.97438 * 5 4 2 7 7 C 1.48326 * 126.93767 * 179.97438 * 6 5 4 8 8 O 1.21493 * 120.00358 * 353.93297 * 7 6 5 9 9 N 1.34776 * 119.99730 * 173.93529 * 7 6 5 10 10 C 1.49733 * 122.75839 * 4.87941 * 9 7 6 11 11 C 1.53160 * 105.59639 * 111.58781 * 10 9 7 12 12 C 1.50970 * 111.95607 * 99.83830 * 11 10 9 13 13 H 1.08990 * 109.52345 * 58.23959 * 12 11 10 14 14 C 1.53589 * 111.30355 * 178.50565 * 12 11 10 15 15 N 1.47173 * 105.65068 * 150.29053 * 14 12 11 16 16 C 1.36935 * 126.09668 * 149.76194 * 15 14 12 17 17 H 1.07991 * 120.00574 * 351.70388 * 16 15 14 18 18 C 1.38815 * 119.99353 * 171.70826 * 16 15 14 19 19 N 1.31621 * 120.00577 * 345.74938 * 18 16 15 20 20 Si 1.86805 * 119.99799 * 165.75260 * 18 16 15 21 21 H 1.48502 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47064 * 119.99540 * 20 18 16 23 23 H 1.48503 * 109.47283 * 239.99847 * 20 18 16 24 24 C 1.46774 * 107.79859 * 329.73464 * 15 14 12 25 25 C 1.53836 * 107.91297 * 20.29779 * 24 15 14 26 26 H 1.08995 * 111.54835 * 118.11047 * 25 24 15 27 27 C 1.51858 * 109.23381 * 241.13252 * 25 24 15 28 28 C 1.43639 * 122.75557 * 184.58576 * 9 7 6 29 29 N 1.30985 * 106.11910 * 0.22180 * 6 5 4 30 30 O 1.20902 * 111.43941 * 359.59889 * 29 6 5 31 31 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47179 * 299.99977 * 1 2 3 33 33 H 1.08991 * 109.47174 * 59.99966 * 1 2 3 34 34 H 1.08995 * 109.46814 * 240.00015 * 2 1 3 35 35 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47298 * 300.00019 * 3 2 1 37 37 H 1.09007 * 109.47206 * 60.00039 * 3 2 1 38 38 H 1.08006 * 128.03284 * 359.95483 * 5 4 2 39 39 H 1.09000 * 110.20926 * 230.60895 * 10 9 7 40 40 H 1.08997 * 110.20911 * 352.43501 * 10 9 7 41 41 H 1.09006 * 108.98565 * 220.46822 * 11 10 9 42 42 H 1.09001 * 108.99158 * 339.27873 * 11 10 9 43 43 H 1.09003 * 110.20831 * 269.33008 * 14 12 11 44 44 H 1.08995 * 110.21357 * 31.23674 * 14 12 11 45 45 H 0.96998 * 119.99852 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.78052 * 260.68843 * 24 15 14 47 47 H 1.09004 * 109.77752 * 139.91019 * 24 15 14 48 48 H 1.09000 * 108.91752 * 320.65327 * 27 25 24 49 49 H 1.08999 * 108.91635 * 79.29213 * 27 25 24 50 50 H 1.08993 * 108.42804 * 359.35861 * 28 9 7 51 51 H 1.09005 * 108.42413 * 116.61969 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8134 -1.8148 1.2636 6 6 2.9920 -2.0664 2.6524 7 6 3.7716 -3.1693 3.2655 8 8 4.2493 -4.0387 2.5640 9 7 3.9501 -3.2071 4.6009 10 6 3.3021 -2.2305 5.5328 11 6 2.2780 -3.0416 6.3323 12 6 2.7975 -3.4157 7.6995 13 1 3.0578 -2.5118 8.2501 14 6 1.7457 -4.1962 8.5017 15 7 2.5065 -5.0844 9.3952 16 6 2.1092 -5.5174 10.6320 17 1 1.2237 -5.1029 11.0905 18 6 2.8448 -6.4891 11.2965 19 7 3.7459 -7.1930 10.6445 20 14 2.5559 -6.7979 13.1160 21 1 1.4980 -5.8811 13.6117 22 1 2.1262 -8.2051 13.3172 23 1 3.8141 -6.5524 13.8657 24 6 3.7667 -5.4238 8.7236 25 6 4.0281 -4.3609 7.6428 26 1 4.9507 -3.8132 7.8348 27 6 4.0682 -5.0315 6.2809 28 6 4.7726 -4.1912 5.2475 29 7 2.3245 -1.1305 3.2803 30 8 1.7929 -0.3707 2.5045 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.2091 -2.3754 0.4294 39 1 4.0460 -1.7985 6.2022 40 1 2.8035 -1.4438 4.9667 41 1 1.3696 -2.4503 6.4478 42 1 2.0403 -3.9526 5.7831 43 1 1.1323 -3.5101 9.0859 44 1 1.1196 -4.7837 7.8303 45 1 4.2596 -7.8723 11.1088 46 1 3.6850 -6.4076 8.2613 47 1 4.5821 -5.4226 9.4471 48 1 4.5852 -5.9867 6.3724 49 1 3.0468 -5.2136 5.9466 50 1 5.1788 -4.8556 4.4849 51 1 5.6045 -3.6803 5.7322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946699845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:41 Heat of formation + Delta-G solvation = 41.166442 kcal Electronic energy + Delta-G solvation = -31340.433387 eV Core-core repulsion = 27243.371718 eV Total energy + Delta-G solvation = -4097.061669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -46.18454 -41.61784 -39.99747 -37.44018 -36.97269 -35.27549 -34.81482 -33.56971 -32.59741 -31.73872 -29.41442 -28.89681 -27.98351 -26.76233 -25.63812 -24.42304 -24.02348 -23.82116 -22.42133 -22.12627 -20.18792 -19.77080 -18.90418 -18.83285 -18.41067 -17.99214 -17.26421 -16.84510 -16.65466 -16.27839 -16.00093 -15.56822 -15.41548 -15.09095 -14.90288 -14.69248 -14.48020 -14.43785 -14.10452 -14.06449 -13.80731 -13.40644 -13.25816 -13.04719 -12.98090 -12.85312 -12.76497 -12.47799 -12.37186 -12.17825 -12.13425 -12.09305 -11.87339 -11.78056 -11.72297 -11.58952 -11.54721 -11.31189 -11.12571 -11.04483 -10.67679 -10.47703 -9.87173 -8.92092 -7.91744 -5.23737 -0.02141 0.63737 1.43784 1.44878 1.55892 1.59693 1.93505 1.98208 2.47672 2.71604 3.25827 3.27289 3.57350 3.66857 3.78493 3.83194 3.84496 3.90883 3.99558 4.02730 4.13177 4.18153 4.28348 4.35546 4.44720 4.55534 4.59281 4.61761 4.63921 4.70956 4.85942 4.86822 4.87619 4.88804 4.95166 5.00746 5.01936 5.08239 5.10633 5.18709 5.19681 5.23086 5.40234 5.41957 5.44082 5.48481 5.50484 5.69706 5.73116 6.13060 6.17766 6.73360 7.03142 7.06255 7.75040 8.43079 9.21354 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.002176 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.254578 B =12864.133049 C =13563.393687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.151 4.151 4 C -0.004 4.004 5 C -0.193 4.193 6 C -0.037 4.037 7 C 0.598 3.402 8 O -0.560 6.560 9 N -0.591 5.591 10 C 0.094 3.906 11 C -0.114 4.114 12 C -0.082 4.082 13 H 0.078 0.922 14 C 0.134 3.866 15 N -0.622 5.622 16 C -0.244 4.244 17 H 0.081 0.919 18 C -0.066 4.066 19 N -0.947 5.947 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.290 1.290 24 C 0.187 3.813 25 C -0.091 4.091 26 H 0.087 0.913 27 C -0.114 4.114 28 C 0.116 3.884 29 N -0.337 5.337 30 O 0.123 5.877 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.192 0.808 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.007 0.993 45 H 0.248 0.752 46 H -0.004 1.004 47 H 0.019 0.981 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 20.384 -24.673 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 C -0.208 4.208 4 C -0.068 4.068 5 C -0.216 4.216 6 C -0.194 4.194 7 C 0.386 3.614 8 O -0.438 6.438 9 N -0.323 5.323 10 C -0.027 4.027 11 C -0.153 4.153 12 C -0.102 4.102 13 H 0.097 0.903 14 C 0.009 3.991 15 N -0.347 5.347 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.260 4.260 19 N -0.595 5.595 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.217 1.217 24 C 0.062 3.938 25 C -0.110 4.110 26 H 0.105 0.895 27 C -0.152 4.152 28 C -0.007 4.007 29 N -0.039 5.039 30 O 0.050 5.950 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.209 0.791 39 H 0.113 0.887 40 H 0.144 0.856 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.014 0.986 47 H 0.037 0.963 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.106 20.001 -23.575 31.072 hybrid contribution 0.315 -1.574 0.825 1.805 sum -2.791 18.427 -22.750 29.409 Atomic orbital electron populations 1.21925 0.92360 1.02734 1.03910 1.20083 0.97250 0.96574 0.89045 1.21917 1.01514 0.93469 1.03901 1.25067 0.98280 0.96213 0.87200 1.22642 1.03610 0.99555 0.95757 1.23314 1.03637 0.98403 0.94053 1.17091 0.79312 0.83476 0.81544 1.90763 1.51732 1.39346 1.61959 1.47973 1.48246 1.31059 1.04996 1.23164 0.96083 0.91530 0.91944 1.21561 0.99138 1.00226 0.94340 1.21690 0.94746 0.97998 0.95724 0.90318 1.21468 0.93992 0.91960 0.91729 1.44719 1.17785 1.55664 1.16556 1.19450 1.09490 1.16368 0.91964 0.90116 1.25674 0.99907 0.97531 1.02863 1.70205 1.28793 1.24899 1.35647 0.85046 0.77390 0.77218 0.79879 1.18837 1.22063 1.21704 1.20845 0.87901 0.93379 0.91694 1.22098 0.98514 0.96247 0.94182 0.89473 1.21298 1.01289 0.98746 0.93865 1.20389 0.92953 0.91603 0.95750 1.73962 1.10180 1.03069 1.16733 1.84746 1.53864 1.42015 1.14417 0.92614 0.92185 0.89185 0.85696 0.92333 0.89252 0.92158 0.79092 0.88748 0.85614 0.89754 0.92424 0.93342 0.97548 0.94315 0.98607 0.96275 0.91455 0.92455 0.90504 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.18 71.98 0.66 -0.18 16 2 C -0.01 -0.06 3.34 -11.54 -0.04 -0.10 16 3 C -0.15 -0.71 9.18 71.98 0.66 -0.05 16 4 C 0.00 -0.06 5.98 25.01 0.15 0.09 16 5 C -0.19 -3.47 10.91 22.60 0.25 -3.22 16 6 C -0.04 -0.88 6.99 42.96 0.30 -0.58 16 7 C 0.60 17.51 7.78 86.93 0.68 18.19 16 8 O -0.56 -19.42 16.48 -3.69 -0.06 -19.48 16 9 N -0.59 -16.14 2.67 -827.37 -2.21 -18.36 16 10 C 0.09 2.22 6.14 85.80 0.53 2.75 16 11 C -0.11 -3.10 4.58 29.99 0.14 -2.96 16 12 C -0.08 -2.71 2.61 -10.47 -0.03 -2.73 16 13 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.13 5.62 6.71 86.45 0.58 6.20 16 15 N -0.62 -32.93 3.37 -696.83 -2.35 -35.28 16 16 C -0.24 -14.03 10.25 84.03 0.86 -13.17 16 17 H 0.08 4.45 7.87 -2.92 -0.02 4.43 16 18 C -0.07 -3.87 5.36 84.86 0.45 -3.41 16 19 N -0.95 -58.53 10.84 21.65 0.23 -58.30 16 20 Si 0.98 46.62 29.58 68.60 2.03 48.65 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.19 9.39 5.00 86.61 0.43 9.82 16 25 C -0.09 -3.30 3.14 -10.11 -0.03 -3.34 16 26 H 0.09 2.87 7.76 -2.39 -0.02 2.85 16 27 C -0.11 -3.75 4.51 29.46 0.13 -3.62 16 28 C 0.12 3.28 5.67 86.15 0.49 3.77 16 29 N -0.34 -7.38 8.66 -49.52 -0.43 -7.81 16 30 O 0.12 2.18 11.18 71.90 0.80 2.98 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.13 0.34 8.12 -2.39 -0.02 0.32 16 35 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.09 2.01 7.85 -2.39 -0.02 2.00 16 40 H 0.13 2.83 4.25 -5.91 -0.03 2.80 16 41 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.06 1.79 5.57 -2.39 -0.01 1.78 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.01 0.29 7.96 -2.39 -0.02 0.27 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.00 -0.23 7.15 -2.38 -0.02 -0.24 16 47 H 0.02 1.07 7.18 -2.39 -0.02 1.05 16 48 H 0.07 2.35 7.66 -2.39 -0.02 2.34 16 49 H 0.06 2.05 5.77 -2.39 -0.01 2.03 16 50 H 0.08 2.29 7.01 -2.39 -0.02 2.28 16 51 H 0.08 2.05 7.70 -2.38 -0.02 2.03 16 Total: -1.00 -73.96 392.88 5.14 -68.82 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.91 Total: 11.33 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.21 Total: 7.44 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -4.76 Total: -119.74 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.74 Total: -16.50 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.96 5.14 -68.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946699845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.983 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds