Wall clock time and date at job start Wed Apr 1 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46855 * 2 1 4 4 C 1.50699 * 109.47145 * 119.99803 * 2 1 3 5 5 C 1.41267 * 126.70603 * 275.01863 * 4 2 1 6 6 C 1.36824 * 103.84795 * 179.97438 * 5 4 2 7 7 C 1.47512 * 126.94117 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00373 * 353.88780 * 7 6 5 9 9 N 1.34779 * 119.99730 * 173.89067 * 7 6 5 10 10 C 1.49721 * 122.75490 * 4.85846 * 9 7 6 11 11 C 1.53173 * 105.59504 * 111.59465 * 10 9 7 12 12 C 1.50958 * 111.95811 * 99.83156 * 11 10 9 13 13 H 1.08999 * 109.52162 * 58.24968 * 12 11 10 14 14 C 1.53596 * 111.30580 * 178.50686 * 12 11 10 15 15 N 1.47169 * 105.65049 * 150.29106 * 14 12 11 16 16 C 1.36941 * 126.09933 * 149.76204 * 15 14 12 17 17 H 1.07997 * 119.99544 * 351.68355 * 16 15 14 18 18 C 1.38807 * 120.00171 * 171.68610 * 16 15 14 19 19 N 1.31620 * 120.00083 * 345.81271 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 165.81190 * 18 16 15 21 21 H 1.48499 * 109.47031 * 90.00026 * 20 18 16 22 22 H 1.48501 * 109.47339 * 210.00021 * 20 18 16 23 23 H 1.48497 * 109.46998 * 329.99742 * 20 18 16 24 24 C 1.46782 * 107.80356 * 329.74006 * 15 14 12 25 25 C 1.53835 * 107.90557 * 20.29352 * 24 15 14 26 26 H 1.09004 * 111.54411 * 118.11646 * 25 24 15 27 27 C 1.51851 * 109.23298 * 241.13087 * 25 24 15 28 28 C 1.43634 * 122.75590 * 184.57576 * 9 7 6 29 29 O 1.34633 * 106.11139 * 0.02562 * 6 5 4 30 30 N 1.20889 * 111.47122 * 359.97438 * 29 6 5 31 31 H 1.08997 * 109.47590 * 299.99783 * 1 2 3 32 32 H 1.08999 * 109.47439 * 60.00138 * 1 2 3 33 33 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47433 * 239.99771 * 2 1 3 35 35 H 1.09002 * 109.47287 * 59.99682 * 3 2 1 36 36 H 1.09002 * 109.47012 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.47121 * 299.99602 * 3 2 1 38 38 H 1.08000 * 128.07156 * 359.96702 * 5 4 2 39 39 H 1.09003 * 110.21806 * 230.60841 * 10 9 7 40 40 H 1.08998 * 110.22047 * 352.44353 * 10 9 7 41 41 H 1.09003 * 108.98719 * 220.46770 * 11 10 9 42 42 H 1.09003 * 108.98193 * 339.27463 * 11 10 9 43 43 H 1.08999 * 110.21025 * 269.33754 * 14 12 11 44 44 H 1.08992 * 110.21051 * 31.24352 * 14 12 11 45 45 H 0.97000 * 120.00327 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.77873 * 260.68554 * 24 15 14 47 47 H 1.08993 * 109.77720 * 139.90481 * 24 15 14 48 48 H 1.09007 * 108.91778 * 320.65759 * 27 25 24 49 49 H 1.08999 * 108.91688 * 79.29866 * 27 25 24 50 50 H 1.09001 * 108.42543 * 359.35351 * 28 9 7 51 51 H 1.08998 * 108.43022 * 116.61682 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2203 -0.1478 2.5126 6 6 2.6839 -1.1930 3.2640 7 6 3.0469 -1.1648 4.6935 8 8 3.0518 -0.1104 5.2989 9 7 3.3733 -2.3080 5.3285 10 6 3.4905 -3.6224 4.6214 11 6 4.9800 -3.9781 4.6577 12 6 5.2965 -4.9721 5.7489 13 1 4.7084 -5.8774 5.5987 14 6 6.7862 -5.3460 5.7483 15 7 7.1156 -5.6671 7.1462 16 6 8.0652 -6.5596 7.5669 17 1 8.5588 -7.2002 6.8511 18 6 8.3932 -6.6409 8.9132 19 7 8.0128 -5.6917 9.7418 20 14 9.3746 -8.0976 9.5491 21 1 10.8252 -7.7898 9.4694 22 1 9.0025 -8.3667 10.9613 23 1 9.0763 -9.2944 8.7220 24 6 6.2450 -4.8597 8.0092 25 6 5.0333 -4.4130 7.1734 26 1 4.1004 -4.8034 7.5803 27 6 5.0036 -2.8963 7.1064 28 6 3.6428 -2.3642 6.7382 29 8 2.7417 -2.2524 2.4352 30 7 2.3775 -1.9618 1.3197 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 2.0403 0.8698 2.8263 39 1 2.9088 -4.3834 5.1417 40 1 3.1490 -3.5275 3.5906 41 1 5.2664 -4.4041 3.6961 42 1 5.5574 -3.0696 4.8289 43 1 6.9561 -6.2147 5.1122 44 1 7.3858 -4.5034 5.4040 45 1 8.2423 -5.7483 10.6825 46 1 6.7887 -3.9854 8.3670 47 1 5.9086 -5.4574 8.8563 48 1 5.2897 -2.4939 8.0782 49 1 5.7237 -2.5614 6.3598 50 1 3.5459 -1.3587 7.1479 51 1 2.8901 -2.9973 7.2080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946807869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:14 Heat of formation + Delta-G solvation = 57.301036 kcal Electronic energy + Delta-G solvation = -31392.721792 eV Core-core repulsion = 27296.359771 eV Total energy + Delta-G solvation = -4096.362021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.30695 -40.44878 -38.65309 -37.02648 -36.00712 -33.23105 -32.85202 -32.69631 -31.76496 -30.73846 -27.87462 -27.62981 -27.37722 -24.98932 -24.50111 -23.83792 -22.85569 -22.37330 -21.43387 -20.26506 -19.72918 -18.29910 -18.03383 -17.91575 -16.95071 -16.72355 -16.37291 -15.52670 -15.09835 -14.84941 -14.77588 -14.57734 -14.33686 -14.01491 -13.85750 -13.65831 -13.53696 -13.14462 -12.84914 -12.66789 -12.56757 -12.42947 -12.09085 -11.99369 -11.79750 -11.74566 -11.56845 -11.30077 -11.26450 -11.05889 -10.82990 -10.76331 -10.70687 -10.48376 -10.43903 -10.05199 -9.99482 -9.87175 -9.80348 -9.61422 -9.55763 -8.79548 -8.54635 -6.82039 -5.75437 -3.04739 0.55220 1.75006 2.30624 2.77105 2.88470 3.39824 3.45990 3.47968 3.58372 3.96919 4.37868 4.50418 4.56602 4.62062 4.69811 4.79548 4.93483 4.98707 5.06023 5.08384 5.15303 5.22323 5.31106 5.33522 5.37493 5.41711 5.48254 5.50918 5.55929 5.62766 5.71476 5.74807 5.76637 5.77552 5.86983 5.96588 6.07859 6.17023 6.22689 6.29673 6.39483 6.53317 6.61207 6.70216 6.81587 7.01311 7.10579 7.50526 7.61692 7.66666 7.79074 7.89877 8.26446 9.20366 9.82877 10.51910 11.38420 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.002152 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.193446 B =13006.758748 C =13556.308801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.150 4.150 6 C -0.074 4.074 7 C 0.607 3.393 8 O -0.518 6.518 9 N -0.591 5.591 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.098 4.098 13 H 0.065 0.935 14 C 0.139 3.861 15 N -0.599 5.599 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.178 3.822 25 C -0.104 4.104 26 H 0.069 0.931 27 C -0.127 4.127 28 C 0.109 3.891 29 O 0.116 5.884 30 N -0.348 5.348 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.014 0.986 45 H 0.253 0.747 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 11.909 -17.252 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.173 4.173 6 C -0.139 4.139 7 C 0.393 3.607 8 O -0.394 6.394 9 N -0.323 5.323 10 C -0.023 4.023 11 C -0.166 4.166 12 C -0.118 4.118 13 H 0.084 0.916 14 C 0.013 3.987 15 N -0.324 5.324 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.562 5.562 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.052 3.948 25 C -0.123 4.123 26 H 0.087 0.913 27 C -0.165 4.165 28 C -0.014 4.014 29 O 0.046 5.954 30 N -0.050 5.050 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.199 0.801 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.221 11.412 -17.559 26.489 hybrid contribution 0.572 -0.158 0.822 1.014 sum -15.649 11.253 -16.738 25.528 Atomic orbital electron populations 1.21836 0.93201 1.02530 1.02655 1.19563 0.96261 0.95533 0.92317 1.21868 1.01671 0.94136 1.02791 1.23594 1.02489 0.90417 0.97314 1.22779 1.01784 1.01235 0.91458 1.24207 1.07174 0.88310 0.94231 1.16446 0.77975 0.83883 0.82405 1.90866 1.53977 1.29662 1.64926 1.47968 1.66005 1.07887 1.10431 1.22907 0.98098 0.83434 0.97863 1.21718 0.94645 1.00741 0.99540 1.21796 0.98800 0.97319 0.93887 0.91637 1.21266 0.91765 0.97060 0.88634 1.44361 1.40919 1.47708 0.99376 1.18995 1.13929 1.10822 0.92083 0.90595 1.24784 1.00552 0.98447 0.96605 1.69992 1.50801 1.31747 1.03618 0.86204 0.79489 0.82483 0.78113 1.21621 1.21606 1.20681 1.21050 0.87017 0.94792 0.91917 1.22254 1.00551 0.93625 0.95911 0.91297 1.21482 0.95732 0.96637 1.02666 1.20586 0.98334 1.03160 0.79338 1.85091 1.62491 1.33856 1.13913 1.73721 1.14031 1.17091 1.00142 0.92055 0.91378 0.92290 0.89143 0.91866 0.92065 0.91370 0.80141 0.89375 0.88517 0.91144 0.90517 0.94157 0.96855 0.93739 0.94985 0.92693 0.90327 0.91024 0.89767 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.17 37.16 0.34 -0.48 16 2 C -0.02 -0.12 3.38 -91.77 -0.31 -0.43 16 3 C -0.15 -0.78 8.81 37.16 0.33 -0.46 16 4 C 0.02 0.19 6.20 -82.17 -0.51 -0.32 16 5 C -0.15 -1.50 10.13 -38.94 -0.39 -1.89 16 6 C -0.07 -0.85 7.04 -36.32 -0.26 -1.11 16 7 C 0.61 8.02 7.75 -12.48 -0.10 7.92 16 8 O -0.52 -8.12 16.44 5.29 0.09 -8.03 16 9 N -0.59 -7.33 2.67 -175.78 -0.47 -7.80 16 10 C 0.10 1.09 6.15 -2.16 -0.01 1.07 16 11 C -0.13 -1.65 4.58 -27.67 -0.13 -1.77 16 12 C -0.10 -1.57 2.61 -90.13 -0.23 -1.80 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.14 2.81 6.71 -3.37 -0.02 2.79 16 15 N -0.60 -15.06 3.37 -171.60 -0.58 -15.64 16 16 C -0.23 -6.39 10.25 -15.06 -0.15 -6.54 16 17 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 18 C -0.01 -0.20 5.36 -17.43 -0.09 -0.29 16 19 N -0.91 -26.78 10.84 55.49 0.60 -26.17 16 20 Si 0.91 21.99 29.58 -169.99 -5.03 16.96 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.18 4.13 5.00 -3.45 -0.02 4.11 16 25 C -0.10 -1.77 3.14 -89.56 -0.28 -2.05 16 26 H 0.07 1.10 7.76 -51.93 -0.40 0.69 16 27 C -0.13 -1.91 4.51 -28.48 -0.13 -2.03 16 28 C 0.11 1.40 5.67 -6.72 -0.04 1.36 16 29 O 0.12 1.33 7.90 15.57 0.12 1.45 16 30 N -0.35 -3.99 12.04 33.52 0.40 -3.58 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.32 7.48 -51.93 -0.39 -0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.18 1.49 7.65 -52.49 -0.40 1.09 16 39 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 40 H 0.10 0.99 4.30 -52.32 -0.23 0.77 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.09 5.57 -51.93 -0.29 0.80 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.01 0.28 7.96 -51.93 -0.41 -0.13 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.82 7.15 -51.93 -0.37 0.45 16 47 H 0.05 1.43 7.18 -51.93 -0.37 1.06 16 48 H 0.08 1.22 7.66 -51.92 -0.40 0.83 16 49 H 0.07 1.15 5.77 -51.93 -0.30 0.85 16 50 H 0.08 1.13 7.01 -51.93 -0.36 0.76 16 51 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -31.80 391.11 -9.06 -40.86 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.09 Total: -2.03 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.01 Total: -1.92 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.04 Total: -53.19 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.21 Total: -6.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.80 -9.06 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946807869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.159 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds