Wall clock time and date at job start Wed Apr 1 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47223 * 240.00114 * 2 1 3 5 5 C 1.50699 * 109.46770 * 119.99998 * 2 1 3 6 6 C 1.38624 * 120.31882 * 180.02562 * 5 2 1 7 7 C 1.38600 * 118.48415 * 179.70825 * 6 5 2 8 8 C 1.39298 * 119.05742 * 0.50959 * 7 6 5 9 9 C 1.48177 * 119.72307 * 179.75552 * 8 7 6 10 10 O 1.21516 * 119.99708 * 359.72600 * 9 8 7 11 11 N 1.34773 * 120.00440 * 179.72747 * 9 8 7 12 12 C 1.46494 * 120.00561 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47606 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.88411 * 57.42720 * 13 12 11 15 15 C 1.54908 * 111.00745 * 293.54908 * 13 12 11 16 16 N 1.47414 * 104.83427 * 204.87537 * 15 13 12 17 17 C 1.36941 * 125.65304 * 204.08670 * 16 15 13 18 18 H 1.08008 * 119.99381 * 6.65072 * 17 16 15 19 19 C 1.38812 * 120.00565 * 186.64665 * 17 16 15 20 20 N 1.31618 * 119.99440 * 7.38012 * 19 17 16 21 21 Si 1.86793 * 120.00104 * 187.37813 * 19 17 16 22 22 H 1.48507 * 109.47081 * 84.99136 * 21 19 17 23 23 H 1.48502 * 109.47308 * 324.99111 * 21 19 17 24 24 H 1.48499 * 109.47100 * 204.98882 * 21 19 17 25 25 C 1.47021 * 108.70498 * 24.35841 * 16 15 13 26 26 C 1.54340 * 107.26384 * 358.57942 * 25 16 15 27 27 H 1.08998 * 110.84923 * 219.67449 * 26 25 16 28 28 O 1.42902 * 110.66092 * 96.52489 * 26 25 16 29 29 N 1.32719 * 120.55597 * 359.47905 * 8 7 6 30 30 C 1.31515 * 121.64431 * 0.27223 * 29 8 7 31 31 H 1.08995 * 109.47267 * 300.00042 * 1 2 3 32 32 H 1.09005 * 109.47101 * 60.00113 * 1 2 3 33 33 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47035 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47061 * 299.99911 * 3 2 1 36 36 H 1.09003 * 109.47019 * 59.99557 * 3 2 1 37 37 H 1.09006 * 109.47178 * 300.00283 * 4 2 1 38 38 H 1.08998 * 109.47367 * 59.99548 * 4 2 1 39 39 H 1.08995 * 109.47117 * 180.02562 * 4 2 1 40 40 H 1.08001 * 120.75992 * 359.97438 * 6 5 2 41 41 H 1.08001 * 120.46966 * 180.28492 * 7 6 5 42 42 H 0.97009 * 119.99695 * 0.02562 * 11 9 8 43 43 H 1.08999 * 109.46981 * 59.99760 * 12 11 9 44 44 H 1.09000 * 109.47239 * 300.00131 * 12 11 9 45 45 H 1.09003 * 110.36417 * 86.03468 * 15 13 12 46 46 H 1.09009 * 110.45681 * 323.76476 * 15 13 12 47 47 H 0.97004 * 119.99432 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.88851 * 118.12853 * 25 16 15 49 49 H 1.09007 * 109.88284 * 239.29575 * 25 16 15 50 50 H 0.96699 * 114.00219 * 66.41973 * 28 26 25 51 51 H 1.08003 * 119.55284 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3938 -0.8404 1.4568 7 6 3.8136 -1.4955 2.6037 8 6 2.8582 -2.0070 3.4789 9 6 3.2906 -2.7148 4.7068 10 8 4.4745 -2.8513 4.9442 11 7 2.3710 -3.2071 5.5602 12 6 2.7985 -3.9073 6.7738 13 6 1.5678 -4.3609 7.5614 14 1 0.9291 -4.9990 6.9507 15 6 0.7784 -3.1448 8.1071 16 7 0.0516 -3.6623 9.2805 17 6 -1.0964 -3.1321 9.8060 18 1 -1.6031 -2.3272 9.2940 19 6 -1.6090 -3.6289 10.9965 20 7 -0.9193 -4.5060 11.6946 21 14 -3.2775 -3.0528 11.6076 22 1 -4.3452 -3.8670 10.9732 23 1 -3.4681 -1.6234 11.2527 24 1 -3.3456 -3.2099 13.0827 25 6 0.7669 -4.8382 9.7973 26 6 1.9797 -5.0791 8.8735 27 1 2.1292 -6.1447 8.6995 28 8 3.1584 -4.4884 9.4246 29 7 1.5637 -1.8610 3.2249 30 6 1.1379 -1.2395 2.1469 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 4.1110 -0.4367 0.7575 41 1 4.8666 -1.6110 2.8141 42 1 1.4259 -3.0984 5.3704 43 1 3.3961 -3.2352 7.3897 44 1 3.3960 -4.7769 6.5002 45 1 0.0769 -2.7803 7.3567 46 1 1.4619 -2.3493 8.4045 47 1 -1.2773 -4.8529 12.5268 48 1 1.1060 -4.6481 10.8156 49 1 0.1110 -5.7087 9.7793 50 1 3.4581 -4.9011 10.2462 51 1 0.0765 -1.1404 1.9735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958076258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:49 Heat of formation + Delta-G solvation = -35.122042 kcal Electronic energy + Delta-G solvation = -30297.662028 eV Core-core repulsion = 26197.292242 eV Total energy + Delta-G solvation = -4100.369786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03375 -39.39575 -38.22984 -37.11689 -34.93047 -34.54938 -32.65147 -32.08718 -30.99632 -29.51036 -28.02141 -27.72216 -27.70623 -25.77516 -24.68991 -23.51440 -23.20383 -21.02473 -20.18993 -19.83966 -19.66806 -18.16187 -17.32818 -16.95221 -16.44571 -15.94283 -15.40292 -15.35565 -15.05567 -14.79544 -14.76893 -14.29805 -14.12838 -14.05680 -13.75809 -13.64907 -13.48302 -13.21336 -12.96460 -12.75396 -12.58270 -12.55598 -12.49322 -12.14853 -11.81763 -11.55946 -11.49091 -11.44060 -11.23627 -11.18366 -10.80973 -10.58682 -10.44557 -10.31716 -10.10467 -10.01556 -9.99777 -9.75652 -9.58332 -9.28751 -9.17003 -8.81039 -8.63805 -6.82914 -5.71936 -3.06605 0.44212 0.97077 2.70001 3.18306 3.40201 3.45019 3.46838 3.70837 3.93570 4.15179 4.23680 4.48492 4.50413 4.57638 4.65642 4.73418 4.77076 4.86602 5.09671 5.15192 5.15520 5.20643 5.29671 5.36045 5.38930 5.41318 5.43164 5.48749 5.52547 5.57318 5.61556 5.63923 5.67802 5.81567 5.82165 5.94269 5.95908 6.08523 6.11912 6.31579 6.41106 6.43165 6.55493 6.66706 6.94473 7.29863 7.43227 7.57991 7.73571 7.75674 8.22466 8.25809 8.29251 9.19590 9.81040 10.47221 11.38894 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002240 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.153110 B =12494.354335 C =14270.333327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.080 4.080 7 C -0.109 4.109 8 C 0.077 3.923 9 C 0.567 3.433 10 O -0.539 6.539 11 N -0.704 5.704 12 C 0.138 3.862 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.144 3.856 16 N -0.601 5.601 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.148 3.852 26 C 0.084 3.916 27 H 0.056 0.944 28 O -0.563 6.563 29 N -0.452 5.452 30 C 0.097 3.903 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.411 0.589 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.025 0.975 47 H 0.252 0.748 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.375 0.625 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 6.126 -25.289 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.130 4.130 8 C -0.061 4.061 9 C 0.351 3.649 10 O -0.416 6.416 11 N -0.354 5.354 12 C 0.015 3.985 13 C -0.129 4.129 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.023 3.977 26 C 0.024 3.976 27 H 0.074 0.926 28 O -0.369 6.369 29 N -0.163 5.163 30 C -0.063 4.063 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.247 0.753 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.222 0.778 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.267 6.003 -24.779 26.511 hybrid contribution -0.784 0.252 0.252 0.861 sum 6.483 6.255 -24.527 26.129 Atomic orbital electron populations 1.22009 0.93581 1.02478 1.02602 1.19507 0.96184 0.95124 0.91968 1.21913 1.01215 0.94245 1.02360 1.21908 1.01208 1.00456 0.96111 1.21073 0.94208 0.98195 0.97196 1.21427 0.95465 0.97052 0.96666 1.22114 1.01706 0.95807 0.93375 1.21244 0.89505 0.99196 0.96143 1.17856 0.85728 0.78947 0.82386 1.90777 1.16604 1.58857 1.75367 1.45968 1.10533 1.56105 1.22783 1.21250 0.96603 0.96747 0.83911 1.22663 0.95907 0.99457 0.94851 0.89293 1.21565 0.93426 0.93271 0.89938 1.44383 1.26865 1.30758 1.30735 1.19064 0.97989 1.15120 1.03247 0.90411 1.24807 0.99163 0.99829 0.96813 1.69927 1.37117 1.34249 1.15776 0.86117 0.83662 0.78147 0.77729 1.21580 1.20714 1.21735 1.21906 0.89691 0.90200 0.95919 1.23077 0.86669 0.94278 0.93536 0.92571 1.86404 1.44194 1.62623 1.43661 1.67617 1.16157 1.13166 1.19370 1.22877 1.00638 0.93790 0.88947 0.91821 0.91841 0.91884 0.92338 0.91910 0.92218 0.92289 0.91916 0.92345 0.84333 0.83432 0.75290 0.89958 0.91649 0.94386 0.95715 0.93770 0.91507 0.94562 0.77753 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.14 37.16 0.27 -0.49 16 2 C -0.03 -0.15 0.86 -155.66 -0.13 -0.29 16 3 C -0.14 -0.72 8.29 37.16 0.31 -0.42 16 4 C -0.14 -0.69 8.29 37.16 0.31 -0.38 16 5 C -0.10 -0.84 4.77 -104.36 -0.50 -1.34 16 6 C -0.08 -0.67 8.84 -39.31 -0.35 -1.01 16 7 C -0.11 -1.19 9.63 -39.05 -0.38 -1.57 16 8 C 0.08 1.03 6.75 -83.01 -0.56 0.47 16 9 C 0.57 8.90 7.81 -12.18 -0.10 8.81 16 10 O -0.54 -9.80 16.32 5.35 0.09 -9.71 16 11 N -0.70 -10.74 5.40 -61.15 -0.33 -11.07 16 12 C 0.14 2.27 4.74 -4.05 -0.02 2.25 16 13 C -0.11 -1.93 3.03 -88.48 -0.27 -2.20 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.14 3.06 6.40 -2.54 -0.02 3.05 16 16 N -0.60 -15.46 3.39 -170.06 -0.58 -16.04 16 17 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 18 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 19 C -0.01 -0.28 5.45 -17.43 -0.09 -0.38 16 20 N -0.92 -27.03 10.48 55.49 0.58 -26.45 16 21 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.15 3.53 5.19 -3.06 -0.02 3.51 16 26 C 0.08 1.57 4.09 -24.89 -0.10 1.47 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 O -0.56 -10.09 12.09 -35.23 -0.43 -10.52 16 29 N -0.45 -5.63 9.54 -9.80 -0.09 -5.72 16 30 C 0.10 0.94 10.15 -17.57 -0.18 0.76 16 31 H 0.06 0.33 7.53 -51.93 -0.39 -0.06 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.31 7.52 -51.93 -0.39 -0.08 16 34 H 0.06 0.28 7.45 -51.93 -0.39 -0.10 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.27 7.45 -51.93 -0.39 -0.12 16 40 H 0.14 0.79 7.24 -52.49 -0.38 0.41 16 41 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 42 H 0.41 5.92 7.67 -40.82 -0.31 5.61 16 43 H 0.08 1.53 7.43 -51.93 -0.39 1.14 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.57 8.01 -51.92 -0.42 0.15 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.07 1.78 6.92 -51.93 -0.36 1.42 16 49 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 50 H 0.38 5.33 9.12 45.56 0.42 5.75 16 51 H 0.16 1.24 5.90 -52.48 -0.31 0.93 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -33.84 407.01 -9.09 -42.93 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.47 Total: 7.53 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.98 Total: 5.74 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.42 Total: -59.28 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.34 Total: -20.23 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.84 -9.09 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958076258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.812 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds