Wall clock time and date at job start Wed Apr 1 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47223 * 240.00114 * 2 1 3 5 5 C 1.50699 * 109.46770 * 119.99998 * 2 1 3 6 6 C 1.38624 * 120.31882 * 180.02562 * 5 2 1 7 7 C 1.38600 * 118.48415 * 179.70825 * 6 5 2 8 8 C 1.39298 * 119.05742 * 0.50959 * 7 6 5 9 9 C 1.48177 * 119.72307 * 179.75552 * 8 7 6 10 10 O 1.21516 * 119.99708 * 359.72600 * 9 8 7 11 11 N 1.34773 * 120.00440 * 179.72747 * 9 8 7 12 12 C 1.46494 * 120.00561 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47606 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.88411 * 57.42720 * 13 12 11 15 15 C 1.54908 * 111.00745 * 293.54908 * 13 12 11 16 16 N 1.47414 * 104.83427 * 204.87537 * 15 13 12 17 17 C 1.36941 * 125.65304 * 204.08670 * 16 15 13 18 18 H 1.08008 * 119.99381 * 6.65072 * 17 16 15 19 19 C 1.38812 * 120.00565 * 186.64665 * 17 16 15 20 20 N 1.31618 * 119.99440 * 7.38012 * 19 17 16 21 21 Si 1.86793 * 120.00104 * 187.37813 * 19 17 16 22 22 H 1.48507 * 109.47081 * 84.99136 * 21 19 17 23 23 H 1.48502 * 109.47308 * 324.99111 * 21 19 17 24 24 H 1.48499 * 109.47100 * 204.98882 * 21 19 17 25 25 C 1.47021 * 108.70498 * 24.35841 * 16 15 13 26 26 C 1.54340 * 107.26384 * 358.57942 * 25 16 15 27 27 H 1.08998 * 110.84923 * 219.67449 * 26 25 16 28 28 O 1.42902 * 110.66092 * 96.52489 * 26 25 16 29 29 N 1.32719 * 120.55597 * 359.47905 * 8 7 6 30 30 C 1.31515 * 121.64431 * 0.27223 * 29 8 7 31 31 H 1.08995 * 109.47267 * 300.00042 * 1 2 3 32 32 H 1.09005 * 109.47101 * 60.00113 * 1 2 3 33 33 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47035 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47061 * 299.99911 * 3 2 1 36 36 H 1.09003 * 109.47019 * 59.99557 * 3 2 1 37 37 H 1.09006 * 109.47178 * 300.00283 * 4 2 1 38 38 H 1.08998 * 109.47367 * 59.99548 * 4 2 1 39 39 H 1.08995 * 109.47117 * 180.02562 * 4 2 1 40 40 H 1.08001 * 120.75992 * 359.97438 * 6 5 2 41 41 H 1.08001 * 120.46966 * 180.28492 * 7 6 5 42 42 H 0.97009 * 119.99695 * 0.02562 * 11 9 8 43 43 H 1.08999 * 109.46981 * 59.99760 * 12 11 9 44 44 H 1.09000 * 109.47239 * 300.00131 * 12 11 9 45 45 H 1.09003 * 110.36417 * 86.03468 * 15 13 12 46 46 H 1.09009 * 110.45681 * 323.76476 * 15 13 12 47 47 H 0.97004 * 119.99432 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.88851 * 118.12853 * 25 16 15 49 49 H 1.09007 * 109.88284 * 239.29575 * 25 16 15 50 50 H 0.96699 * 114.00219 * 66.41973 * 28 26 25 51 51 H 1.08003 * 119.55284 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3938 -0.8404 1.4568 7 6 3.8136 -1.4955 2.6037 8 6 2.8582 -2.0070 3.4789 9 6 3.2906 -2.7148 4.7068 10 8 4.4745 -2.8513 4.9442 11 7 2.3710 -3.2071 5.5602 12 6 2.7985 -3.9073 6.7738 13 6 1.5678 -4.3609 7.5614 14 1 0.9291 -4.9990 6.9507 15 6 0.7784 -3.1448 8.1071 16 7 0.0516 -3.6623 9.2805 17 6 -1.0964 -3.1321 9.8060 18 1 -1.6031 -2.3272 9.2940 19 6 -1.6090 -3.6289 10.9965 20 7 -0.9193 -4.5060 11.6946 21 14 -3.2775 -3.0528 11.6076 22 1 -4.3452 -3.8670 10.9732 23 1 -3.4681 -1.6234 11.2527 24 1 -3.3456 -3.2099 13.0827 25 6 0.7669 -4.8382 9.7973 26 6 1.9797 -5.0791 8.8735 27 1 2.1292 -6.1447 8.6995 28 8 3.1584 -4.4884 9.4246 29 7 1.5637 -1.8610 3.2249 30 6 1.1379 -1.2395 2.1469 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 4.1110 -0.4367 0.7575 41 1 4.8666 -1.6110 2.8141 42 1 1.4259 -3.0984 5.3704 43 1 3.3961 -3.2352 7.3897 44 1 3.3960 -4.7769 6.5002 45 1 0.0769 -2.7803 7.3567 46 1 1.4619 -2.3493 8.4045 47 1 -1.2773 -4.8529 12.5268 48 1 1.1060 -4.6481 10.8156 49 1 0.1110 -5.7087 9.7793 50 1 3.4581 -4.9011 10.2462 51 1 0.0765 -1.1404 1.9735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958076258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:48 Heat of formation + Delta-G solvation = -59.310784 kcal Electronic energy + Delta-G solvation = -30298.710931 eV Core-core repulsion = 26197.292242 eV Total energy + Delta-G solvation = -4101.418689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87440 -40.58865 -39.73549 -37.75681 -36.42511 -36.14750 -34.00334 -33.33424 -32.03850 -31.03967 -29.43622 -28.44873 -28.08635 -27.39531 -26.02695 -24.65749 -24.18815 -22.41633 -21.72429 -21.26524 -20.33946 -19.34178 -19.05695 -18.07859 -17.82798 -16.84241 -16.69730 -16.56427 -16.47510 -15.89112 -15.82279 -15.44474 -15.36122 -15.15842 -14.91511 -14.68224 -14.44753 -14.39218 -14.17536 -14.09707 -13.68548 -13.54459 -13.24238 -13.12957 -13.01577 -12.87493 -12.70769 -12.52008 -12.34125 -12.09593 -12.06763 -11.93574 -11.90846 -11.79848 -11.73203 -11.63267 -11.27938 -10.85592 -10.85152 -10.68280 -10.47902 -10.24892 -9.93282 -8.91385 -7.86201 -5.23696 -0.40960 0.22374 1.45401 1.47693 1.55689 1.65334 2.03299 2.48230 2.81152 3.07510 3.27278 3.33543 3.54022 3.55178 3.68388 3.82641 3.89634 3.92115 3.95144 4.00332 4.08350 4.09565 4.27018 4.40938 4.47920 4.55374 4.60721 4.72182 4.79547 4.80844 4.81738 4.85604 4.92948 4.94806 4.98474 4.99253 5.06262 5.12974 5.18831 5.28803 5.33705 5.34238 5.36688 5.45054 5.48685 5.52754 5.59508 5.70923 6.17586 6.35721 6.76467 6.93725 7.07300 7.08968 7.74083 8.39246 9.22687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002240 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.153110 B =12494.354335 C =14270.333327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.090 4.090 6 C -0.075 4.075 7 C -0.112 4.112 8 C 0.048 3.952 9 C 0.565 3.435 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.153 3.847 13 C -0.093 4.093 14 H 0.107 0.893 15 C 0.144 3.856 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.283 1.283 23 H -0.271 1.271 24 H -0.295 1.295 25 C 0.154 3.846 26 C 0.098 3.902 27 H 0.090 0.910 28 O -0.571 6.571 29 N -0.472 5.472 30 C 0.087 3.913 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.415 0.585 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.008 0.992 47 H 0.248 0.752 48 H 0.032 0.968 49 H 0.011 0.989 50 H 0.391 0.609 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 6.960 -28.168 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.133 4.133 8 C -0.089 4.089 9 C 0.351 3.649 10 O -0.451 6.451 11 N -0.351 5.351 12 C 0.029 3.971 13 C -0.112 4.112 14 H 0.125 0.875 15 C 0.018 3.982 16 N -0.348 5.348 17 C -0.373 4.373 18 H 0.098 0.902 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.221 1.221 25 C 0.028 3.972 26 C 0.038 3.962 27 H 0.108 0.892 28 O -0.378 6.378 29 N -0.183 5.183 30 C -0.073 4.073 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.252 0.748 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.029 0.971 50 H 0.241 0.759 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.966 6.844 -27.676 29.349 hybrid contribution -0.696 0.084 1.067 1.277 sum 6.270 6.928 -26.609 28.202 Atomic orbital electron populations 1.22036 0.93078 1.02670 1.03101 1.19577 0.96636 0.95279 0.91034 1.21926 1.01582 0.93613 1.02607 1.21915 1.01574 1.00105 0.96015 1.21403 0.93948 0.96554 0.97346 1.21747 0.96254 0.95958 0.96035 1.22218 1.01363 0.95840 0.93868 1.20948 0.90510 1.01311 0.96094 1.18269 0.85241 0.78417 0.82967 1.90744 1.17778 1.60198 1.76330 1.45897 1.10812 1.56061 1.22364 1.20974 0.95558 0.96620 0.83929 1.22556 0.96053 0.97849 0.94760 0.87485 1.21635 0.93321 0.94333 0.88878 1.44707 1.26832 1.31368 1.31937 1.19442 0.99040 1.15245 1.03554 0.90178 1.25663 1.02723 1.00348 0.97158 1.70142 1.38474 1.35330 1.15857 0.85077 0.79362 0.78144 0.76643 1.20926 1.19609 1.22100 1.21760 0.91075 0.88698 0.95656 1.22924 0.84680 0.96271 0.92348 0.89195 1.86385 1.43404 1.63291 1.44761 1.67525 1.15860 1.14165 1.20750 1.23282 1.01899 0.93512 0.88569 0.92131 0.90615 0.91871 0.91816 0.90550 0.93147 0.92904 0.90590 0.91819 0.81293 0.83446 0.74767 0.92186 0.90621 0.93434 0.97422 0.94318 0.94950 0.97086 0.75904 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.14 71.98 0.51 -0.64 16 2 C -0.02 -0.21 0.86 -52.93 -0.05 -0.26 16 3 C -0.14 -1.04 8.29 71.98 0.60 -0.44 16 4 C -0.14 -0.94 8.29 71.98 0.60 -0.34 16 5 C -0.09 -1.26 4.77 -19.70 -0.09 -1.35 16 6 C -0.07 -1.08 8.84 22.45 0.20 -0.88 16 7 C -0.11 -2.35 9.63 22.61 0.22 -2.13 16 8 C 0.05 1.27 6.75 41.91 0.28 1.56 16 9 C 0.56 17.91 7.81 86.89 0.68 18.59 16 10 O -0.57 -21.08 16.32 -3.77 -0.06 -21.14 16 11 N -0.70 -21.30 5.40 -465.68 -2.51 -23.81 16 12 C 0.15 4.95 4.74 86.38 0.41 5.35 16 13 C -0.09 -3.20 3.03 -9.41 -0.03 -3.23 16 14 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 15 C 0.14 6.14 6.40 86.86 0.56 6.70 16 16 N -0.62 -32.60 3.39 -691.95 -2.35 -34.95 16 17 C -0.24 -13.91 10.26 84.03 0.86 -13.05 16 18 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 19 C -0.07 -3.78 5.45 84.86 0.46 -3.32 16 20 N -0.95 -57.09 10.48 21.65 0.23 -56.86 16 21 Si 0.98 46.11 29.56 68.60 2.03 48.13 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 C 0.15 7.49 5.19 86.73 0.45 7.94 16 26 C 0.10 3.57 4.09 31.79 0.13 3.70 16 27 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 28 O -0.57 -20.17 12.09 -148.98 -1.80 -21.97 16 29 N -0.47 -11.48 9.54 -184.91 -1.76 -13.25 16 30 C 0.09 1.57 10.15 84.82 0.86 2.43 16 31 H 0.06 0.50 7.53 -2.39 -0.02 0.49 16 32 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.06 0.48 7.52 -2.39 -0.02 0.47 16 34 H 0.06 0.41 7.45 -2.39 -0.02 0.40 16 35 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 39 H 0.06 0.38 7.45 -2.39 -0.02 0.36 16 40 H 0.17 1.36 7.24 -2.91 -0.02 1.34 16 41 H 0.15 3.02 7.64 -2.91 -0.02 3.00 16 42 H 0.42 11.84 7.67 -92.70 -0.71 11.13 16 43 H 0.06 2.24 7.43 -2.39 -0.02 2.22 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.01 0.37 8.01 -2.38 -0.02 0.35 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.03 1.79 6.92 -2.39 -0.02 1.77 16 49 H 0.01 0.58 7.92 -2.38 -0.02 0.56 16 50 H 0.39 10.92 9.12 -74.06 -0.68 10.25 16 51 H 0.18 2.46 5.90 -2.91 -0.02 2.44 16 Total: -1.00 -75.04 407.01 -0.02 -75.06 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.44 Total: 28.16 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.65 Total: 20.62 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.40 Total: -128.87 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.86 Total: -43.10 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.04 -0.02 -75.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958076258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.750 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds