Wall clock time and date at job start Wed Apr 1 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47456 * 240.00063 * 2 1 3 5 5 C 1.50706 * 109.47357 * 119.99954 * 2 1 3 6 6 C 1.38628 * 120.32031 * 60.00043 * 5 2 1 7 7 C 1.38586 * 118.48302 * 180.30277 * 6 5 2 8 8 C 1.39304 * 119.06089 * 359.45318 * 7 6 5 9 9 C 1.48179 * 119.72482 * 180.27762 * 8 7 6 10 10 O 1.21512 * 119.99644 * 0.27718 * 9 8 7 11 11 N 1.34770 * 120.00218 * 180.28070 * 9 8 7 12 12 C 1.46493 * 120.00184 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47302 * 179.97438 * 12 11 9 14 14 H 1.08992 * 110.88751 * 302.57297 * 13 12 11 15 15 C 1.54909 * 111.00317 * 66.45552 * 13 12 11 16 16 N 1.47427 * 104.83297 * 155.08333 * 15 13 12 17 17 C 1.36939 * 125.64721 * 155.83130 * 16 15 13 18 18 H 1.08003 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00007 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47341 * 120.00150 * 21 19 17 24 24 H 1.48506 * 109.47114 * 240.00123 * 21 19 17 25 25 C 1.47016 * 108.70159 * 335.87141 * 16 15 13 26 26 C 1.54322 * 107.27598 * 1.05787 * 25 16 15 27 27 H 1.08998 * 110.72241 * 140.55315 * 26 25 16 28 28 O 1.42902 * 110.71964 * 263.83407 * 26 25 16 29 29 N 1.32716 * 120.55409 * 0.55836 * 8 7 6 30 30 C 1.31519 * 121.64074 * 359.71573 * 29 8 7 31 31 H 1.08999 * 109.47404 * 299.99949 * 1 2 3 32 32 H 1.09003 * 109.47478 * 59.99913 * 1 2 3 33 33 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46700 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46742 * 299.99834 * 3 2 1 36 36 H 1.08999 * 109.46915 * 59.99751 * 3 2 1 37 37 H 1.09008 * 109.46815 * 300.00368 * 4 2 1 38 38 H 1.09003 * 109.47212 * 59.99862 * 4 2 1 39 39 H 1.08992 * 109.47406 * 179.97438 * 4 2 1 40 40 H 1.08002 * 120.75504 * 0.02562 * 6 5 2 41 41 H 1.08001 * 120.46602 * 179.70217 * 7 6 5 42 42 H 0.97001 * 119.99998 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.47199 * 299.99884 * 12 11 9 44 44 H 1.08999 * 109.47442 * 59.99659 * 12 11 9 45 45 H 1.08999 * 110.36751 * 273.92256 * 15 13 12 46 46 H 1.08999 * 110.36971 * 36.24606 * 15 13 12 47 47 H 0.97005 * 120.00142 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.88462 * 120.47895 * 25 16 15 49 49 H 1.09007 * 109.88195 * 241.48367 * 25 16 15 50 50 H 0.96701 * 113.99820 * 293.51821 * 28 26 25 51 51 H 1.08004 * 119.54899 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7016 -2.0375 1.4565 7 6 2.1790 -2.6516 2.6035 8 6 2.9798 -1.9213 3.4787 9 6 3.5033 -2.5652 4.7063 10 8 3.2378 -3.7269 4.9435 11 7 4.2739 -1.8622 5.5598 12 6 4.7910 -2.4986 6.7737 13 6 5.6300 -1.4897 7.5607 14 1 6.4448 -1.1014 6.9497 15 6 4.7475 -0.3391 8.1058 16 7 5.4779 0.1730 9.2796 17 6 5.3629 1.4328 9.8039 18 1 4.6907 2.1468 9.3513 19 6 6.1095 1.7919 10.9177 20 7 6.9283 0.9216 11.4696 21 14 5.9521 3.5101 11.6333 22 1 4.9724 4.2906 10.8358 23 1 5.4846 3.4197 13.0399 24 1 7.2739 4.1859 11.5935 25 6 6.3508 -0.8926 9.7935 26 6 6.1685 -2.1179 8.8733 27 1 7.1228 -2.6152 8.6995 28 8 5.2157 -3.0282 9.4262 29 7 3.2732 -0.6521 3.2250 30 6 2.8289 -0.0434 2.1471 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1299 -0.7208 -1.2494 40 1 1.0821 -2.5792 0.7569 41 1 1.9370 -3.6829 2.8137 42 1 4.4861 -0.9349 5.3702 43 1 3.9579 -2.8375 7.3894 44 1 5.4116 -3.3520 6.5005 45 1 4.6389 0.4439 7.3554 46 1 3.7701 -0.7189 8.4033 47 1 7.4503 1.1726 12.2477 48 1 7.3898 -0.5637 9.7713 49 1 6.0643 -1.1466 10.8141 50 1 5.5040 -3.4482 10.2481 51 1 3.0889 0.9905 1.9739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958076260.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:57 Heat of formation + Delta-G solvation = -34.692524 kcal Electronic energy + Delta-G solvation = -30300.148026 eV Core-core repulsion = 26199.796866 eV Total energy + Delta-G solvation = -4100.351161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.03326 -39.39619 -38.23124 -37.11645 -34.93377 -34.55495 -32.65132 -32.08445 -30.99383 -29.50608 -28.02009 -27.72163 -27.70708 -25.77033 -24.69076 -23.51364 -23.20465 -21.02328 -20.18363 -19.83969 -19.66785 -18.16142 -17.32935 -16.95214 -16.44663 -15.94179 -15.40413 -15.35559 -15.05358 -14.80774 -14.76881 -14.29906 -14.10317 -14.06219 -13.73252 -13.66830 -13.48308 -13.21095 -12.96424 -12.75403 -12.58842 -12.55505 -12.49215 -12.14792 -11.83409 -11.55821 -11.48666 -11.37992 -11.23410 -11.20146 -10.81647 -10.60907 -10.43952 -10.31050 -10.10425 -10.00625 -9.96759 -9.77738 -9.58145 -9.28680 -9.15401 -8.81037 -8.64628 -6.84111 -5.72879 -3.05498 0.44288 0.97186 2.70059 3.18429 3.39520 3.45200 3.47600 3.70914 3.93663 4.15307 4.23775 4.48177 4.50542 4.57732 4.65703 4.73502 4.77116 4.86694 5.09767 5.15204 5.15911 5.20782 5.29793 5.35852 5.39049 5.41418 5.44791 5.48845 5.52756 5.56799 5.62207 5.64158 5.67947 5.81661 5.82254 5.94413 5.96007 6.08656 6.12845 6.31669 6.40846 6.44118 6.55524 6.66522 6.93893 7.40836 7.43378 7.50762 7.73799 7.76398 8.22613 8.24648 8.28550 9.20393 9.80994 10.46831 11.39363 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002243 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.116456 B =12478.245619 C =14249.712423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.080 4.080 7 C -0.109 4.109 8 C 0.077 3.923 9 C 0.567 3.433 10 O -0.539 6.539 11 N -0.704 5.704 12 C 0.138 3.862 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.153 3.847 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.564 6.564 29 N -0.452 5.452 30 C 0.097 3.903 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.411 0.589 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.025 0.975 47 H 0.251 0.749 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.375 0.625 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 -4.964 -24.902 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.207 4.207 4 C -0.197 4.197 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.130 4.130 8 C -0.061 4.061 9 C 0.351 3.649 10 O -0.416 6.416 11 N -0.354 5.354 12 C 0.015 3.985 13 C -0.129 4.129 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.028 3.972 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.369 6.369 29 N -0.163 5.163 30 C -0.063 4.063 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.247 0.753 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.222 0.778 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.766 -5.045 -24.411 26.423 hybrid contribution -0.061 0.790 0.322 0.855 sum -8.827 -4.255 -24.089 26.006 Atomic orbital electron populations 1.21911 0.93192 1.02268 1.02360 1.19507 0.96018 0.95290 0.91969 1.22008 1.01527 0.94535 1.02602 1.21908 1.01449 1.00217 0.96110 1.21074 0.97635 0.94767 0.97196 1.21424 0.98338 0.94182 0.96665 1.22112 0.95673 1.01847 0.93376 1.21247 0.97955 0.90742 0.96149 1.17855 0.78966 0.85708 0.82385 1.90775 1.59192 1.16280 1.75370 1.45968 1.50260 1.16388 1.22770 1.21253 0.98428 0.94932 0.83908 1.22676 0.98969 0.96400 0.94857 0.89260 1.21571 0.93943 0.92834 0.89803 1.44385 1.47517 1.10446 1.30596 1.19130 1.20249 0.87278 1.08506 0.90314 1.24796 0.99202 0.98321 0.98366 1.69944 1.29905 1.33366 1.24154 0.86018 0.77230 0.83575 0.78804 1.20492 1.21790 1.21778 1.21856 0.95541 0.85008 0.94802 1.23120 0.89938 0.91031 0.93624 0.92489 1.86405 1.45984 1.60978 1.43571 1.67618 1.20261 1.09046 1.19378 1.22876 0.94056 1.00373 0.88947 0.92221 0.91908 0.92340 0.91879 0.91840 0.91821 0.92344 0.91921 0.92283 0.84334 0.83436 0.75281 0.89978 0.91657 0.94365 0.95690 0.93832 0.92979 0.93193 0.77811 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.29 37.15 0.31 -0.42 16 2 C -0.03 -0.15 0.86 -155.66 -0.13 -0.29 16 3 C -0.15 -0.76 7.14 37.16 0.27 -0.49 16 4 C -0.14 -0.69 8.29 37.16 0.31 -0.38 16 5 C -0.10 -0.84 4.77 -104.36 -0.50 -1.34 16 6 C -0.08 -0.67 8.84 -39.31 -0.35 -1.01 16 7 C -0.11 -1.19 9.63 -39.06 -0.38 -1.57 16 8 C 0.08 1.03 6.75 -83.01 -0.56 0.47 16 9 C 0.57 8.90 7.81 -12.18 -0.10 8.81 16 10 O -0.54 -9.79 16.32 5.36 0.09 -9.71 16 11 N -0.70 -10.74 5.40 -61.15 -0.33 -11.07 16 12 C 0.14 2.27 4.74 -4.05 -0.02 2.25 16 13 C -0.11 -1.94 3.03 -88.47 -0.27 -2.21 16 14 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.14 3.07 6.40 -2.53 -0.02 3.05 16 16 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 17 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.93 -27.06 10.31 55.49 0.57 -26.49 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.15 3.65 5.14 -3.07 -0.02 3.64 16 26 C 0.08 1.54 4.09 -24.89 -0.10 1.44 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.56 -10.04 12.10 -35.23 -0.43 -10.46 16 29 N -0.45 -5.64 9.54 -9.80 -0.09 -5.73 16 30 C 0.10 0.94 10.15 -17.57 -0.18 0.76 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.28 7.45 -51.93 -0.39 -0.10 16 34 H 0.06 0.32 7.52 -51.93 -0.39 -0.08 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.33 7.53 -51.93 -0.39 -0.06 16 37 H 0.06 0.27 7.45 -51.92 -0.39 -0.11 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.14 0.79 7.24 -52.49 -0.38 0.41 16 41 H 0.15 1.54 7.64 -52.49 -0.40 1.13 16 42 H 0.41 5.94 7.67 -40.82 -0.31 5.62 16 43 H 0.08 1.52 7.42 -51.93 -0.39 1.13 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 49 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 50 H 0.37 5.27 9.12 45.56 0.42 5.68 16 51 H 0.16 1.25 5.90 -52.48 -0.31 0.94 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -33.79 406.79 -9.10 -42.90 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.46 Total: 7.45 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.98 Total: 5.87 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.43 Total: -59.37 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.34 Total: -20.17 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.79 -9.10 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958076260.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.203 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds