Wall clock time and date at job start Wed Apr 1 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47456 * 240.00063 * 2 1 3 5 5 C 1.50706 * 109.47357 * 119.99954 * 2 1 3 6 6 C 1.38628 * 120.32031 * 60.00043 * 5 2 1 7 7 C 1.38586 * 118.48302 * 180.30277 * 6 5 2 8 8 C 1.39304 * 119.06089 * 359.45318 * 7 6 5 9 9 C 1.48179 * 119.72482 * 180.27762 * 8 7 6 10 10 O 1.21512 * 119.99644 * 0.27718 * 9 8 7 11 11 N 1.34770 * 120.00218 * 180.28070 * 9 8 7 12 12 C 1.46493 * 120.00184 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47302 * 179.97438 * 12 11 9 14 14 H 1.08992 * 110.88751 * 302.57297 * 13 12 11 15 15 C 1.54909 * 111.00317 * 66.45552 * 13 12 11 16 16 N 1.47427 * 104.83297 * 155.08333 * 15 13 12 17 17 C 1.36939 * 125.64721 * 155.83130 * 16 15 13 18 18 H 1.08003 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00007 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47341 * 120.00150 * 21 19 17 24 24 H 1.48506 * 109.47114 * 240.00123 * 21 19 17 25 25 C 1.47016 * 108.70159 * 335.87141 * 16 15 13 26 26 C 1.54322 * 107.27598 * 1.05787 * 25 16 15 27 27 H 1.08998 * 110.72241 * 140.55315 * 26 25 16 28 28 O 1.42902 * 110.71964 * 263.83407 * 26 25 16 29 29 N 1.32716 * 120.55409 * 0.55836 * 8 7 6 30 30 C 1.31519 * 121.64074 * 359.71573 * 29 8 7 31 31 H 1.08999 * 109.47404 * 299.99949 * 1 2 3 32 32 H 1.09003 * 109.47478 * 59.99913 * 1 2 3 33 33 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46700 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46742 * 299.99834 * 3 2 1 36 36 H 1.08999 * 109.46915 * 59.99751 * 3 2 1 37 37 H 1.09008 * 109.46815 * 300.00368 * 4 2 1 38 38 H 1.09003 * 109.47212 * 59.99862 * 4 2 1 39 39 H 1.08992 * 109.47406 * 179.97438 * 4 2 1 40 40 H 1.08002 * 120.75504 * 0.02562 * 6 5 2 41 41 H 1.08001 * 120.46602 * 179.70217 * 7 6 5 42 42 H 0.97001 * 119.99998 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.47199 * 299.99884 * 12 11 9 44 44 H 1.08999 * 109.47442 * 59.99659 * 12 11 9 45 45 H 1.08999 * 110.36751 * 273.92256 * 15 13 12 46 46 H 1.08999 * 110.36971 * 36.24606 * 15 13 12 47 47 H 0.97005 * 120.00142 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.88462 * 120.47895 * 25 16 15 49 49 H 1.09007 * 109.88195 * 241.48367 * 25 16 15 50 50 H 0.96701 * 113.99820 * 293.51821 * 28 26 25 51 51 H 1.08004 * 119.54899 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7016 -2.0375 1.4565 7 6 2.1790 -2.6516 2.6035 8 6 2.9798 -1.9213 3.4787 9 6 3.5033 -2.5652 4.7063 10 8 3.2378 -3.7269 4.9435 11 7 4.2739 -1.8622 5.5598 12 6 4.7910 -2.4986 6.7737 13 6 5.6300 -1.4897 7.5607 14 1 6.4448 -1.1014 6.9497 15 6 4.7475 -0.3391 8.1058 16 7 5.4779 0.1730 9.2796 17 6 5.3629 1.4328 9.8039 18 1 4.6907 2.1468 9.3513 19 6 6.1095 1.7919 10.9177 20 7 6.9283 0.9216 11.4696 21 14 5.9521 3.5101 11.6333 22 1 4.9724 4.2906 10.8358 23 1 5.4846 3.4197 13.0399 24 1 7.2739 4.1859 11.5935 25 6 6.3508 -0.8926 9.7935 26 6 6.1685 -2.1179 8.8733 27 1 7.1228 -2.6152 8.6995 28 8 5.2157 -3.0282 9.4262 29 7 3.2732 -0.6521 3.2250 30 6 2.8289 -0.0434 2.1471 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1299 -0.7208 -1.2494 40 1 1.0821 -2.5792 0.7569 41 1 1.9370 -3.6829 2.8137 42 1 4.4861 -0.9349 5.3702 43 1 3.9579 -2.8375 7.3894 44 1 5.4116 -3.3520 6.5005 45 1 4.6389 0.4439 7.3554 46 1 3.7701 -0.7189 8.4033 47 1 7.4503 1.1726 12.2477 48 1 7.3898 -0.5637 9.7713 49 1 6.0643 -1.1466 10.8141 50 1 5.5040 -3.4482 10.2481 51 1 3.0889 0.9905 1.9739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958076260.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:56 Heat of formation + Delta-G solvation = -58.810589 kcal Electronic energy + Delta-G solvation = -30301.193864 eV Core-core repulsion = 26199.796866 eV Total energy + Delta-G solvation = -4101.396999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87432 -40.58961 -39.73763 -37.75681 -36.42933 -36.14899 -33.99800 -33.33357 -32.03560 -31.03911 -29.43804 -28.44857 -28.08631 -27.39066 -26.02885 -24.65843 -24.18773 -22.41270 -21.72073 -21.26743 -20.33919 -19.34281 -19.05684 -18.07834 -17.82760 -16.85111 -16.70152 -16.56583 -16.47484 -15.88614 -15.79350 -15.45612 -15.35928 -15.15779 -14.91458 -14.68296 -14.45144 -14.38317 -14.18292 -14.09831 -13.68479 -13.54801 -13.15143 -13.14119 -13.08641 -12.87524 -12.70990 -12.52046 -12.32917 -12.10233 -12.06910 -11.91979 -11.90837 -11.78663 -11.73754 -11.63467 -11.27561 -10.85140 -10.80353 -10.73991 -10.47852 -10.24822 -9.93238 -8.92424 -7.87144 -5.22417 -0.40891 0.22444 1.45333 1.46282 1.56720 1.65418 2.03422 2.47840 2.81223 3.07573 3.26924 3.35178 3.54148 3.55200 3.68383 3.82528 3.89546 3.92130 3.95504 3.99715 4.08404 4.09597 4.27080 4.40856 4.47948 4.56326 4.60678 4.72238 4.79580 4.81127 4.81693 4.85744 4.92974 4.94959 4.98497 4.99246 5.06260 5.13021 5.18809 5.28660 5.33725 5.36269 5.40693 5.45090 5.48664 5.51939 5.59585 5.68998 6.16551 6.35782 6.76506 6.93469 7.08080 7.09106 7.74185 8.38903 9.23353 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002243 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.116456 B =12478.245619 C =14249.712423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.090 4.090 6 C -0.074 4.074 7 C -0.112 4.112 8 C 0.048 3.952 9 C 0.565 3.435 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.153 3.847 13 C -0.093 4.093 14 H 0.105 0.895 15 C 0.144 3.856 16 N -0.624 5.624 17 C -0.241 4.241 18 H 0.081 0.919 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.979 3.021 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.160 3.840 26 C 0.097 3.903 27 H 0.090 0.910 28 O -0.570 6.570 29 N -0.472 5.472 30 C 0.087 3.913 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.415 0.585 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.011 0.989 47 H 0.247 0.753 48 H 0.024 0.976 49 H 0.016 0.984 50 H 0.391 0.609 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 -4.474 -27.697 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.209 4.209 4 C -0.196 4.196 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.133 4.133 8 C -0.089 4.089 9 C 0.351 3.649 10 O -0.450 6.450 11 N -0.351 5.351 12 C 0.029 3.971 13 C -0.113 4.113 14 H 0.123 0.877 15 C 0.019 3.981 16 N -0.351 5.351 17 C -0.370 4.370 18 H 0.099 0.901 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.035 3.965 26 C 0.037 3.963 27 H 0.107 0.893 28 O -0.378 6.378 29 N -0.183 5.183 30 C -0.073 4.073 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.252 0.748 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.034 0.966 50 H 0.241 0.759 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.647 -4.561 -27.223 29.240 hybrid contribution 0.129 0.675 1.113 1.308 sum -9.518 -3.887 -26.110 28.062 Atomic orbital electron populations 1.21924 0.92457 1.02733 1.02609 1.19578 0.96460 0.95454 0.91033 1.22036 1.01580 0.94172 1.03101 1.21916 1.01071 1.00609 0.96017 1.21403 0.95854 0.94655 0.97341 1.21745 0.97858 0.94347 0.96037 1.22217 0.95327 1.01879 0.93862 1.20953 1.00196 0.91610 0.96107 1.18264 0.78281 0.85377 0.82960 1.90742 1.60360 1.17605 1.76325 1.45899 1.50331 1.16551 1.22364 1.20978 0.97484 0.94683 0.83929 1.22564 0.98770 0.95177 0.94767 0.87651 1.21639 0.93542 0.94200 0.88728 1.44705 1.48123 1.10325 1.31909 1.19490 1.20134 0.88526 1.08807 0.90135 1.25641 0.99251 1.02130 0.98921 1.70153 1.30582 1.35005 1.24309 0.84992 0.77287 0.79282 0.77663 1.19094 1.22063 1.21608 1.21693 0.93571 0.86783 0.94495 1.22947 0.91650 0.89296 0.92428 0.89254 1.86384 1.46218 1.60504 1.44696 1.67528 1.21159 1.08866 1.20761 1.23278 0.94216 1.01200 0.88577 0.93141 0.90553 0.91809 0.91886 0.90614 0.92127 0.91807 0.90597 0.92911 0.81286 0.83433 0.74780 0.92081 0.90671 0.93504 0.97117 0.94333 0.95767 0.96616 0.75912 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.29 71.98 0.60 -0.44 16 2 C -0.02 -0.21 0.86 -52.93 -0.05 -0.26 16 3 C -0.15 -1.16 7.14 71.98 0.51 -0.64 16 4 C -0.14 -0.95 8.29 71.98 0.60 -0.35 16 5 C -0.09 -1.26 4.77 -19.69 -0.09 -1.36 16 6 C -0.07 -1.07 8.84 22.45 0.20 -0.88 16 7 C -0.11 -2.35 9.63 22.61 0.22 -2.13 16 8 C 0.05 1.27 6.75 41.91 0.28 1.56 16 9 C 0.57 17.89 7.81 86.89 0.68 18.57 16 10 O -0.57 -21.02 16.32 -3.75 -0.06 -21.08 16 11 N -0.70 -21.31 5.40 -465.68 -2.51 -23.82 16 12 C 0.15 4.94 4.74 86.38 0.41 5.35 16 13 C -0.09 -3.23 3.03 -9.40 -0.03 -3.26 16 14 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 15 C 0.14 6.14 6.40 86.85 0.56 6.70 16 16 N -0.62 -32.68 3.39 -691.99 -2.35 -35.03 16 17 C -0.24 -13.72 10.28 84.03 0.86 -12.85 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 20 N -0.95 -57.08 10.31 21.65 0.22 -56.86 16 21 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 C 0.16 7.82 5.14 86.73 0.45 8.26 16 26 C 0.10 3.54 4.09 31.78 0.13 3.67 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 O -0.57 -19.96 12.10 -148.98 -1.80 -21.76 16 29 N -0.47 -11.51 9.54 -184.91 -1.76 -13.28 16 30 C 0.09 1.57 10.15 84.81 0.86 2.43 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.41 7.45 -2.39 -0.02 0.40 16 34 H 0.06 0.49 7.52 -2.39 -0.02 0.47 16 35 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.51 7.53 -2.39 -0.02 0.49 16 37 H 0.06 0.38 7.45 -2.38 -0.02 0.36 16 38 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.17 1.36 7.24 -2.91 -0.02 1.34 16 41 H 0.15 3.02 7.64 -2.91 -0.02 3.00 16 42 H 0.42 11.88 7.67 -92.71 -0.71 11.17 16 43 H 0.06 2.26 7.42 -2.39 -0.02 2.24 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 47 H 0.25 14.39 8.31 -92.70 -0.77 13.61 16 48 H 0.02 1.30 7.38 -2.39 -0.02 1.28 16 49 H 0.02 0.86 7.43 -2.38 -0.02 0.84 16 50 H 0.39 10.75 9.12 -74.06 -0.68 10.07 16 51 H 0.18 2.48 5.90 -2.91 -0.02 2.46 16 Total: -1.00 -74.83 406.79 -0.03 -74.86 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.44 Total: 27.77 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 6.65 Total: 21.02 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -6.40 Total: -128.98 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.86 Total: -42.84 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.83 -0.03 -74.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958076260.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.047 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds