Wall clock time and date at job start Wed Apr 1 2020 04:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38025 * 119.51323 * 125.00413 * 4 3 2 6 6 C 1.39925 * 119.12858 * 180.25291 * 5 4 3 7 7 C 1.48165 * 120.88833 * 179.71849 * 6 5 4 8 8 O 1.21513 * 120.00386 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99677 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99914 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.49555 * 325.00155 * 10 9 7 12 12 C 1.53191 * 109.49576 * 85.06082 * 10 9 7 13 13 N 1.46994 * 108.73860 * 65.35110 * 12 10 9 14 14 C 1.36941 * 120.61566 * 233.56851 * 13 12 10 15 15 H 1.07998 * 120.00388 * 151.85822 * 14 13 12 16 16 C 1.38814 * 119.99556 * 331.85307 * 14 13 12 17 17 N 1.31617 * 119.99958 * 343.06227 * 16 14 13 18 18 Si 1.86792 * 120.00041 * 163.06781 * 16 14 13 19 19 H 1.48505 * 109.47213 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47551 * 119.99804 * 18 16 14 21 21 H 1.48506 * 109.47233 * 239.99987 * 18 16 14 22 22 C 1.46931 * 118.75873 * 53.58501 * 13 12 10 23 23 C 1.53192 * 108.77393 * 306.39323 * 22 13 12 24 24 C 1.53037 * 109.49483 * 204.93456 * 10 9 7 25 25 H 1.09002 * 109.45598 * 181.39390 * 24 10 9 26 26 C 1.52993 * 109.46056 * 61.43545 * 24 10 9 27 27 C 1.39617 * 118.22012 * 359.48723 * 6 5 4 28 28 C 1.38852 * 118.94619 * 0.54961 * 27 6 5 29 29 O 1.35681 * 119.62386 * 179.70894 * 28 27 6 30 30 N 1.31877 * 119.51144 * 305.01983 * 4 3 2 31 31 H 1.08996 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46684 * 299.99440 * 1 2 3 33 33 H 1.08996 * 109.47045 * 59.99952 * 1 2 3 34 34 H 1.09000 * 109.46684 * 240.00560 * 2 1 3 35 35 H 1.08994 * 109.47212 * 120.00569 * 2 1 3 36 36 H 1.08998 * 109.47213 * 60.00251 * 3 2 1 37 37 H 1.09004 * 109.47653 * 300.00398 * 3 2 1 38 38 H 1.07992 * 120.43625 * 359.97318 * 5 4 3 39 39 H 0.96998 * 120.00535 * 0.02562 * 9 7 6 40 40 H 1.09005 * 109.58304 * 185.10221 * 12 10 9 41 41 H 1.09003 * 109.59165 * 305.53199 * 12 10 9 42 42 H 0.97001 * 119.99805 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.58732 * 186.60496 * 22 13 12 44 44 H 1.08994 * 109.70011 * 66.25003 * 22 13 12 45 45 H 1.09003 * 109.49820 * 294.68657 * 23 22 13 46 46 H 1.08995 * 109.49911 * 174.58591 * 23 22 13 47 47 H 1.09001 * 109.47305 * 59.99633 * 26 24 10 48 48 H 1.09003 * 109.47206 * 179.97438 * 26 24 10 49 49 H 1.08999 * 109.47298 * 299.99210 * 26 24 10 50 50 H 1.07999 * 120.52677 * 180.25839 * 27 6 5 51 51 H 0.96697 * 113.99908 * 269.98156 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1317 -0.9847 6 6 5.6257 2.1219 -0.9807 7 6 6.3944 2.8432 -2.0219 8 8 5.8100 3.4545 -2.8945 9 7 7.7418 2.8214 -2.0011 10 6 8.5020 3.5351 -3.0304 11 1 7.9685 3.4814 -3.9793 12 6 8.6673 5.0015 -2.6191 13 7 9.4990 5.0616 -1.4086 14 6 9.0607 5.7247 -0.2935 15 1 9.3989 5.4178 0.6852 16 6 8.1818 6.7916 -0.4212 17 7 8.0266 7.3803 -1.5880 18 14 7.2195 7.3917 1.0631 19 1 7.5712 6.5675 2.2473 20 1 7.5573 8.8128 1.3306 21 1 5.7645 7.2714 0.7914 22 6 10.8094 4.3970 -1.4175 23 6 10.6193 2.9376 -1.8425 24 6 9.8825 2.8927 -3.1832 25 1 10.4565 3.4394 -3.9314 26 6 9.7213 1.4378 -3.6279 27 6 6.2781 1.4184 0.0335 28 6 5.5179 0.7512 0.9848 29 8 6.1377 0.0582 1.9730 30 7 4.1970 0.7838 0.9389 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 3.6854 2.6676 -1.7503 39 1 8.2084 2.3332 -1.3048 40 1 9.1529 5.5541 -3.4236 41 1 7.6891 5.4359 -2.4132 42 1 7.4122 8.1256 -1.6773 43 1 11.2443 4.4331 -0.4187 44 1 11.4715 4.8997 -2.1226 45 1 10.0338 2.4123 -1.0880 46 1 11.5930 2.4591 -1.9463 47 1 9.1976 1.4057 -4.5833 48 1 10.7045 0.9801 -3.7372 49 1 9.1469 0.8908 -2.8802 50 1 7.3569 1.3896 0.0748 51 1 6.3172 -0.8660 1.7524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968404154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:41 Heat of formation + Delta-G solvation = -34.089751 kcal Electronic energy + Delta-G solvation = -31935.174960 eV Core-core repulsion = 27834.849937 eV Total energy + Delta-G solvation = -4100.325023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83524 -39.49289 -37.73853 -37.28273 -35.00887 -34.20904 -33.12881 -32.32440 -31.05172 -30.71430 -29.20109 -27.38806 -27.04700 -24.72334 -23.94641 -22.95718 -22.29782 -21.64341 -21.14603 -20.27698 -18.83889 -18.76369 -17.21676 -16.98485 -16.56025 -15.75772 -15.56668 -15.16833 -15.07255 -14.92159 -14.50607 -14.29587 -13.92425 -13.83715 -13.65627 -13.61741 -13.33215 -13.08411 -12.87334 -12.63833 -12.36491 -12.22697 -11.99908 -11.85126 -11.64173 -11.55549 -11.44798 -11.32999 -11.16085 -10.93942 -10.86270 -10.74630 -10.55712 -10.23266 -10.00942 -9.92438 -9.83920 -9.69634 -9.55764 -9.33992 -8.88313 -8.49422 -8.46278 -6.67250 -5.78804 -3.21982 0.73320 0.90239 3.01477 3.37410 3.43946 3.46449 3.46832 3.47083 3.84699 4.31208 4.49368 4.64893 4.84262 4.88256 4.95022 5.01000 5.05868 5.14909 5.17968 5.27229 5.29083 5.39388 5.43739 5.49519 5.52029 5.61148 5.62501 5.77648 5.81280 5.85847 5.86988 5.93997 6.00654 6.08998 6.09582 6.15246 6.22639 6.29937 6.36262 6.38768 6.47778 6.58255 6.70779 6.81713 6.92418 7.30049 7.34479 7.62787 7.79340 7.79841 7.94038 8.44528 8.58941 9.19718 9.83659 10.38984 11.29092 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.003790 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.283775 B = 7385.564328 C = 8549.760396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.070 4.070 4 C 0.148 3.852 5 C -0.125 4.125 6 C -0.055 4.055 7 C 0.555 3.445 8 O -0.532 6.532 9 N -0.686 5.686 10 C 0.125 3.875 11 H 0.078 0.922 12 C 0.160 3.840 13 N -0.587 5.587 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.142 3.858 23 C -0.129 4.129 24 C -0.094 4.094 25 H 0.080 0.920 26 C -0.144 4.144 27 C -0.158 4.158 28 C 0.310 3.690 29 O -0.478 6.478 30 N -0.489 5.489 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.395 0.605 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.144 0.856 51 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -17.765 -0.430 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.107 4.107 4 C 0.011 3.989 5 C -0.146 4.146 6 C -0.066 4.066 7 C 0.340 3.660 8 O -0.410 6.410 9 N -0.336 5.336 10 C 0.019 3.981 11 H 0.096 0.904 12 C 0.033 3.967 13 N -0.310 5.310 14 C -0.384 4.384 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.540 5.540 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.015 3.985 23 C -0.169 4.169 24 C -0.113 4.113 25 H 0.098 0.902 26 C -0.202 4.202 27 C -0.180 4.180 28 C 0.131 3.869 29 O -0.284 6.284 30 N -0.209 5.209 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.168 0.832 39 H 0.231 0.769 40 H 0.045 0.955 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.161 0.839 51 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.270 -17.083 -0.141 18.198 hybrid contribution 0.400 0.252 0.415 0.629 sum -5.871 -16.831 0.274 17.827 Atomic orbital electron populations 1.21786 0.95632 1.01660 1.01913 1.21432 0.95547 0.95565 1.02769 1.20631 0.87777 0.98590 1.03744 1.20917 0.96560 0.92272 0.89196 1.22137 0.93393 0.98957 1.00119 1.20461 0.94399 0.96376 0.95393 1.17927 0.82690 0.80874 0.84545 1.90762 1.69645 1.43305 1.37269 1.45752 1.05033 1.52073 1.30780 1.21883 0.90080 0.95768 0.90340 0.90354 1.21223 0.98452 0.88751 0.88259 1.44003 1.13274 1.61151 1.12552 1.19114 1.24942 1.08541 0.85762 0.91824 1.24998 1.01723 0.95918 0.96466 1.70002 1.37991 1.22941 1.23115 0.86360 0.80243 0.78384 0.82661 1.20266 1.21602 1.21547 1.20934 0.88781 0.90049 0.98710 1.22089 0.98814 0.99951 0.96005 1.21323 0.96124 0.95606 0.98286 0.90206 1.21854 1.00946 0.96540 1.00853 1.22283 1.01781 0.99871 0.94025 1.18901 0.86720 0.94186 0.87121 1.84836 1.77005 1.27631 1.38960 1.66726 1.09864 1.20329 1.24018 0.92718 0.92599 0.92660 0.92173 0.90882 0.89653 0.89765 0.83153 0.76874 0.95463 0.88467 0.93629 0.92769 0.96351 0.92901 0.92636 0.93023 0.93029 0.93184 0.83868 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.04 5.79 -26.73 -0.15 -1.20 16 3 C -0.07 -0.71 5.61 -27.89 -0.16 -0.87 16 4 C 0.15 1.98 6.18 -82.65 -0.51 1.47 16 5 C -0.13 -1.85 9.27 -39.03 -0.36 -2.21 16 6 C -0.06 -0.88 5.91 -104.67 -0.62 -1.50 16 7 C 0.55 10.33 7.76 -12.18 -0.09 10.23 16 8 O -0.53 -11.60 16.11 5.35 0.09 -11.52 16 9 N -0.69 -11.84 4.21 -54.53 -0.23 -12.07 16 10 C 0.12 2.28 2.24 -67.81 -0.15 2.13 16 11 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 12 C 0.16 3.74 4.91 -3.67 -0.02 3.72 16 13 N -0.59 -13.93 2.91 -172.26 -0.50 -14.43 16 14 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 15 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 16 C 0.01 0.23 4.92 -17.43 -0.09 0.15 16 17 N -0.90 -26.34 11.19 55.49 0.62 -25.72 16 18 Si 0.89 22.37 29.59 -169.99 -5.03 17.34 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 C 0.14 2.75 6.52 -3.71 -0.02 2.72 16 23 C -0.13 -1.95 5.20 -26.61 -0.14 -2.09 16 24 C -0.09 -1.40 2.48 -90.58 -0.22 -1.63 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 C -0.14 -1.74 9.05 37.15 0.34 -1.40 16 27 C -0.16 -2.21 9.55 -38.84 -0.37 -2.58 16 28 C 0.31 4.25 7.74 -17.16 -0.13 4.12 16 29 O -0.48 -5.56 13.56 -18.74 -0.25 -5.82 16 30 N -0.49 -6.93 9.87 -9.60 -0.09 -7.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 38 H 0.15 2.13 7.62 -52.49 -0.40 1.73 16 39 H 0.40 6.10 4.78 -40.82 -0.19 5.91 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 2.70 6.06 -51.93 -0.31 2.39 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 50 H 0.14 1.77 6.53 -52.49 -0.34 1.43 16 51 H 0.40 2.39 9.06 45.56 0.41 2.80 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -33.35 406.43 -9.15 -42.50 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.39 Total: 7.28 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.48 Total: 3.33 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.20 Total: -59.24 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.17 Total: -17.33 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.35 -9.15 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968404154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.410 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds