Wall clock time and date at job start Wed Apr 1 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47002 * 2 1 4 4 C 1.50700 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.38025 * 119.51323 * 125.00413 * 4 3 2 6 6 C 1.39925 * 119.12858 * 180.25291 * 5 4 3 7 7 C 1.48165 * 120.88833 * 179.71849 * 6 5 4 8 8 O 1.21513 * 120.00386 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99677 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99914 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.49555 * 325.00155 * 10 9 7 12 12 C 1.53191 * 109.49576 * 85.06082 * 10 9 7 13 13 N 1.46994 * 108.73860 * 65.35110 * 12 10 9 14 14 C 1.36941 * 120.61566 * 233.56851 * 13 12 10 15 15 H 1.07998 * 120.00388 * 151.85822 * 14 13 12 16 16 C 1.38814 * 119.99556 * 331.85307 * 14 13 12 17 17 N 1.31617 * 119.99958 * 343.06227 * 16 14 13 18 18 Si 1.86792 * 120.00041 * 163.06781 * 16 14 13 19 19 H 1.48505 * 109.47213 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47551 * 119.99804 * 18 16 14 21 21 H 1.48506 * 109.47233 * 239.99987 * 18 16 14 22 22 C 1.46931 * 118.75873 * 53.58501 * 13 12 10 23 23 C 1.53192 * 108.77393 * 306.39323 * 22 13 12 24 24 C 1.53037 * 109.49483 * 204.93456 * 10 9 7 25 25 H 1.09002 * 109.45598 * 181.39390 * 24 10 9 26 26 C 1.52993 * 109.46056 * 61.43545 * 24 10 9 27 27 C 1.39617 * 118.22012 * 359.48723 * 6 5 4 28 28 C 1.38852 * 118.94619 * 0.54961 * 27 6 5 29 29 O 1.35681 * 119.62386 * 179.70894 * 28 27 6 30 30 N 1.31877 * 119.51144 * 305.01983 * 4 3 2 31 31 H 1.08996 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46684 * 299.99440 * 1 2 3 33 33 H 1.08996 * 109.47045 * 59.99952 * 1 2 3 34 34 H 1.09000 * 109.46684 * 240.00560 * 2 1 3 35 35 H 1.08994 * 109.47212 * 120.00569 * 2 1 3 36 36 H 1.08998 * 109.47213 * 60.00251 * 3 2 1 37 37 H 1.09004 * 109.47653 * 300.00398 * 3 2 1 38 38 H 1.07992 * 120.43625 * 359.97318 * 5 4 3 39 39 H 0.96998 * 120.00535 * 0.02562 * 9 7 6 40 40 H 1.09005 * 109.58304 * 185.10221 * 12 10 9 41 41 H 1.09003 * 109.59165 * 305.53199 * 12 10 9 42 42 H 0.97001 * 119.99805 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.58732 * 186.60496 * 22 13 12 44 44 H 1.08994 * 109.70011 * 66.25003 * 22 13 12 45 45 H 1.09003 * 109.49820 * 294.68657 * 23 22 13 46 46 H 1.08995 * 109.49911 * 174.58591 * 23 22 13 47 47 H 1.09001 * 109.47305 * 59.99633 * 26 24 10 48 48 H 1.09003 * 109.47206 * 179.97438 * 26 24 10 49 49 H 1.08999 * 109.47298 * 299.99210 * 26 24 10 50 50 H 1.07999 * 120.52677 * 180.25839 * 27 6 5 51 51 H 0.96697 * 113.99908 * 269.98156 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1317 -0.9847 6 6 5.6257 2.1219 -0.9807 7 6 6.3944 2.8432 -2.0219 8 8 5.8100 3.4545 -2.8945 9 7 7.7418 2.8214 -2.0011 10 6 8.5020 3.5351 -3.0304 11 1 7.9685 3.4814 -3.9793 12 6 8.6673 5.0015 -2.6191 13 7 9.4990 5.0616 -1.4086 14 6 9.0607 5.7247 -0.2935 15 1 9.3989 5.4178 0.6852 16 6 8.1818 6.7916 -0.4212 17 7 8.0266 7.3803 -1.5880 18 14 7.2195 7.3917 1.0631 19 1 7.5712 6.5675 2.2473 20 1 7.5573 8.8128 1.3306 21 1 5.7645 7.2714 0.7914 22 6 10.8094 4.3970 -1.4175 23 6 10.6193 2.9376 -1.8425 24 6 9.8825 2.8927 -3.1832 25 1 10.4565 3.4394 -3.9314 26 6 9.7213 1.4378 -3.6279 27 6 6.2781 1.4184 0.0335 28 6 5.5179 0.7512 0.9848 29 8 6.1377 0.0582 1.9730 30 7 4.1970 0.7838 0.9389 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 3.6854 2.6676 -1.7503 39 1 8.2084 2.3332 -1.3048 40 1 9.1529 5.5541 -3.4236 41 1 7.6891 5.4359 -2.4132 42 1 7.4122 8.1256 -1.6773 43 1 11.2443 4.4331 -0.4187 44 1 11.4715 4.8997 -2.1226 45 1 10.0338 2.4123 -1.0880 46 1 11.5930 2.4591 -1.9463 47 1 9.1976 1.4057 -4.5833 48 1 10.7045 0.9801 -3.7372 49 1 9.1469 0.8908 -2.8802 50 1 7.3569 1.3896 0.0748 51 1 6.3172 -0.8660 1.7524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968404154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:39 Heat of formation + Delta-G solvation = -57.981553 kcal Electronic energy + Delta-G solvation = -31936.210986 eV Core-core repulsion = 27834.849937 eV Total energy + Delta-G solvation = -4101.361049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00041 -40.87809 -39.15812 -38.31538 -36.01130 -35.84645 -34.53842 -33.54982 -32.81737 -31.69346 -30.74927 -28.94890 -27.92486 -26.21242 -25.47404 -23.97247 -23.73636 -22.78498 -22.55232 -21.43565 -20.36801 -19.87193 -18.72885 -18.37534 -17.86248 -16.98928 -16.83072 -16.69900 -16.37255 -16.02331 -15.83784 -15.71710 -15.46231 -15.15611 -14.84846 -14.81332 -14.72409 -14.45969 -14.12144 -13.73467 -13.61784 -13.40053 -13.17037 -13.04169 -13.00779 -12.78376 -12.72784 -12.65021 -12.50928 -12.35372 -12.23112 -12.03789 -11.96497 -11.58825 -11.57666 -11.42160 -11.23700 -11.09221 -11.00883 -10.59780 -10.51981 -10.03492 -9.92525 -8.66131 -7.89218 -5.33374 -0.45670 -0.15326 1.35305 1.39654 1.46817 1.73230 2.10732 2.44032 2.45044 2.64923 3.26775 3.32791 3.49219 3.66810 3.83015 3.84388 3.86737 3.98000 4.09206 4.11285 4.16369 4.19827 4.35271 4.49960 4.55210 4.66017 4.67683 4.70194 4.79447 4.80137 4.85688 4.88313 4.95667 4.96122 5.01536 5.07694 5.17213 5.19194 5.23725 5.25514 5.33876 5.40016 5.45810 5.48776 5.49404 5.57771 5.66227 5.69915 6.37221 6.50428 6.55999 6.78930 7.12627 7.16574 7.85898 8.35973 9.15616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.003790 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.283775 B = 7385.564328 C = 8549.760396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.071 4.071 4 C 0.152 3.848 5 C -0.138 4.138 6 C -0.073 4.073 7 C 0.550 3.450 8 O -0.574 6.574 9 N -0.676 5.676 10 C 0.136 3.864 11 H 0.069 0.931 12 C 0.169 3.831 13 N -0.600 5.600 14 C -0.246 4.246 15 H 0.068 0.932 16 C -0.047 4.047 17 N -0.931 5.931 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.302 1.302 22 C 0.135 3.865 23 C -0.117 4.117 24 C -0.087 4.087 25 H 0.079 0.921 26 C -0.136 4.136 27 C -0.156 4.156 28 C 0.315 3.685 29 O -0.482 6.482 30 N -0.498 5.498 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.406 0.594 40 H 0.001 0.999 41 H 0.048 0.952 42 H 0.245 0.755 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.161 0.839 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -20.864 0.841 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.108 4.108 4 C 0.015 3.985 5 C -0.159 4.159 6 C -0.084 4.084 7 C 0.337 3.663 8 O -0.455 6.455 9 N -0.326 5.326 10 C 0.030 3.970 11 H 0.087 0.913 12 C 0.042 3.958 13 N -0.323 5.323 14 C -0.377 4.377 15 H 0.086 0.914 16 C -0.243 4.243 17 N -0.577 5.577 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.230 1.230 22 C 0.010 3.990 23 C -0.156 4.156 24 C -0.106 4.106 25 H 0.098 0.902 26 C -0.193 4.193 27 C -0.178 4.178 28 C 0.135 3.865 29 O -0.292 6.292 30 N -0.218 5.218 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.244 0.756 40 H 0.019 0.981 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.075 0.925 50 H 0.178 0.822 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.470 -20.254 1.162 21.012 hybrid contribution 0.230 1.184 0.052 1.207 sum -5.240 -19.070 1.213 19.814 Atomic orbital electron populations 1.21765 0.94249 1.02366 1.02322 1.21373 0.96667 0.94387 1.02265 1.20765 0.85774 0.99755 1.04546 1.21302 0.97883 0.91083 0.88253 1.22241 0.93210 0.99638 1.00813 1.20320 0.94782 0.97579 0.95685 1.18407 0.83068 0.80333 0.84539 1.90733 1.70455 1.45178 1.39112 1.45633 1.04737 1.51484 1.30768 1.21586 0.92564 0.92946 0.89951 0.91284 1.20908 0.95593 0.91739 0.87515 1.44193 1.15232 1.61238 1.11669 1.19426 1.23753 1.07587 0.86940 0.91394 1.25632 1.03408 0.96899 0.98338 1.70155 1.39007 1.23681 1.24886 0.85520 0.78191 0.78033 0.80739 1.18802 1.21626 1.22995 1.21161 0.86420 0.92419 0.99036 1.21973 1.01005 0.96697 0.95875 1.21287 0.93275 0.97519 0.98568 0.90226 1.21771 1.02646 0.93960 1.00918 1.22380 1.02607 0.99320 0.93450 1.19000 0.86655 0.93896 0.86922 1.84783 1.76632 1.29570 1.38225 1.66853 1.10218 1.20548 1.24214 0.91885 0.92360 0.92106 0.92252 0.91775 0.89257 0.88523 0.83472 0.75551 0.98112 0.93339 0.94580 0.92521 0.96733 0.92041 0.88859 0.93043 0.90413 0.92516 0.82195 0.71535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -1.81 5.79 30.59 0.18 -1.63 16 3 C -0.07 -1.37 5.61 29.85 0.17 -1.20 16 4 C 0.15 3.93 6.18 42.50 0.26 4.20 16 5 C -0.14 -4.10 9.27 22.63 0.21 -3.89 16 6 C -0.07 -2.32 5.91 -19.90 -0.12 -2.44 16 7 C 0.55 20.86 7.76 86.88 0.67 21.53 16 8 O -0.57 -26.24 16.11 -3.75 -0.06 -26.30 16 9 N -0.68 -23.01 4.21 -444.73 -1.87 -24.88 16 10 C 0.14 4.97 2.24 45.07 0.10 5.07 16 11 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 12 C 0.17 8.23 4.91 86.35 0.42 8.66 16 13 N -0.60 -28.65 2.91 -698.91 -2.04 -30.69 16 14 C -0.25 -13.33 9.58 84.03 0.81 -12.52 16 15 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 16 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 17 N -0.93 -57.23 11.19 21.65 0.24 -56.99 16 18 Si 0.95 47.00 29.59 68.60 2.03 49.03 16 19 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 21 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 22 C 0.13 5.01 6.52 86.36 0.56 5.57 16 23 C -0.12 -3.12 5.20 30.67 0.16 -2.96 16 24 C -0.09 -2.40 2.48 -10.77 -0.03 -2.43 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 C -0.14 -2.76 9.05 71.98 0.65 -2.11 16 27 C -0.16 -4.12 9.55 22.75 0.22 -3.91 16 28 C 0.31 8.00 7.74 84.78 0.66 8.65 16 29 O -0.48 -9.82 13.56 -89.99 -1.22 -11.04 16 30 N -0.50 -13.33 9.87 -297.16 -2.93 -16.26 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.18 7.94 -2.39 -0.02 1.16 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.62 7.86 -2.38 -0.02 1.60 16 38 H 0.15 4.35 7.62 -2.91 -0.02 4.33 16 39 H 0.41 11.77 4.78 -92.71 -0.44 11.33 16 40 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 41 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 42 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.06 1.57 6.40 -2.39 -0.02 1.55 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.10 7.54 -2.39 -0.02 1.08 16 50 H 0.16 3.54 6.53 -2.91 -0.02 3.52 16 51 H 0.42 3.67 9.06 -74.06 -0.67 3.00 16 Total: -1.00 -75.68 406.43 0.04 -75.63 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.16 Total: 24.41 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.05 Total: 17.09 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -6.60 Total: -128.82 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.28 Total: -37.34 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.68 0.04 -75.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968404154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.652 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds