Wall clock time and date at job start Wed Apr 1 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47174 * 2 1 4 4 C 1.50706 * 109.46984 * 180.02562 * 3 2 1 5 5 N 1.34656 * 125.79947 * 264.97965 * 4 3 2 6 6 H 0.97004 * 124.84956 * 359.97438 * 5 4 3 7 7 C 1.36443 * 110.29903 * 180.02562 * 5 4 3 8 8 C 1.34490 * 108.85387 * 359.74479 * 7 5 4 9 9 C 1.36764 * 125.80398 * 85.00283 * 4 3 2 10 10 C 1.47268 * 126.94245 * 359.93811 * 9 4 3 11 11 O 1.21627 * 119.99964 * 338.55283 * 10 9 4 12 12 N 1.34770 * 119.99939 * 158.54720 * 10 9 4 13 13 C 1.47494 * 125.66579 * 4.89750 * 12 10 9 14 14 C 1.55021 * 104.89812 * 203.99812 * 13 12 10 15 15 C 1.54516 * 101.52172 * 323.62142 * 14 13 12 16 16 C 1.47197 * 125.66185 * 184.86883 * 12 10 9 17 17 C 1.52514 * 110.05114 * 153.10258 * 15 14 13 18 18 N 1.47306 * 108.38576 * 72.02366 * 17 15 14 19 19 C 1.36936 * 121.05988 * 229.38115 * 18 17 15 20 20 H 1.08002 * 119.99824 * 153.55781 * 19 18 17 21 21 C 1.38809 * 120.00022 * 333.55785 * 19 18 17 22 22 N 1.31616 * 120.00294 * 344.09177 * 21 19 18 23 23 Si 1.86798 * 119.99952 * 164.09117 * 21 19 18 24 24 H 1.48500 * 109.47440 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47400 * 120.00094 * 23 21 19 26 26 H 1.48499 * 109.47390 * 240.00129 * 23 21 19 27 27 C 1.47169 * 117.87804 * 49.40640 * 18 17 15 28 28 C 1.53277 * 108.54647 * 308.89378 * 27 18 17 29 29 O 1.42071 * 110.33595 * 276.05045 * 15 14 13 30 30 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46734 * 300.00157 * 1 2 3 32 32 H 1.09001 * 109.46895 * 59.99879 * 1 2 3 33 33 H 1.09004 * 109.47292 * 240.00363 * 2 1 3 34 34 H 1.08995 * 109.47755 * 120.00122 * 2 1 3 35 35 H 1.08994 * 109.46956 * 60.00526 * 3 2 1 36 36 H 1.08993 * 109.46982 * 299.99887 * 3 2 1 37 37 H 1.08004 * 125.57450 * 180.02562 * 7 5 4 38 38 H 1.08002 * 126.83405 * 180.25017 * 8 7 5 39 39 H 1.09003 * 110.35191 * 85.14606 * 13 12 10 40 40 H 1.08998 * 110.35518 * 322.85162 * 13 12 10 41 41 H 1.08994 * 111.01268 * 81.68028 * 14 13 12 42 42 H 1.08994 * 111.01552 * 205.52843 * 14 13 12 43 43 H 1.08994 * 109.91058 * 59.14524 * 16 12 10 44 44 H 1.08996 * 110.06495 * 297.96663 * 16 12 10 45 45 H 1.09006 * 109.67754 * 191.74624 * 17 15 14 46 46 H 1.08995 * 109.68765 * 312.26001 * 17 15 14 47 47 H 0.97000 * 120.00532 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.62863 * 68.61515 * 27 18 17 49 49 H 1.09000 * 109.62496 * 188.98609 * 27 18 17 50 50 H 1.09002 * 109.50692 * 172.79832 * 28 27 18 51 51 H 1.08995 * 109.51058 * 292.94689 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3352 1.5379 1.0870 6 1 4.0142 1.6182 1.9989 7 6 5.6498 1.5066 0.7232 8 6 5.7279 1.3840 -0.6139 9 6 4.3467 1.3460 -1.1060 10 6 3.9093 1.2225 -2.5068 11 8 2.7929 0.8125 -2.7613 12 7 4.7460 1.5638 -3.5066 13 6 6.1532 1.9761 -3.3473 14 6 6.4663 2.8207 -4.6090 15 6 5.6568 2.0712 -5.6908 16 6 4.4075 1.5865 -4.9389 17 6 5.2691 3.0299 -6.8118 18 7 6.4793 3.3505 -7.5882 19 6 6.8073 4.6472 -7.8818 20 1 7.8390 4.9179 -8.0518 21 6 5.8141 5.6136 -7.9609 22 7 4.5526 5.2536 -8.0677 23 14 6.2677 7.4251 -7.9158 24 1 7.7410 7.5635 -7.7916 25 1 5.8123 8.0808 -9.1679 26 1 5.6105 8.0711 -6.7514 27 6 7.3241 2.2328 -8.0386 28 6 7.6304 1.3367 -6.8334 29 8 6.4036 0.9721 -6.1934 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 6.4904 1.5655 1.3988 38 1 6.6285 1.3272 -1.2073 39 1 6.8022 1.1013 -3.3061 40 1 6.2719 2.5800 -2.4478 41 1 6.1095 3.8440 -4.4927 42 1 7.5322 2.8039 -4.8360 43 1 3.5793 2.2732 -5.1137 44 1 4.1369 0.5857 -5.2751 45 1 4.5314 2.5573 -7.4603 46 1 4.8526 3.9429 -6.3865 47 1 3.8585 5.9289 -8.1234 48 1 6.7951 1.6569 -8.7980 49 1 8.2534 2.6212 -8.4553 50 1 8.1466 0.4377 -7.1702 51 1 8.2620 1.8777 -6.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972512649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:32 Heat of formation + Delta-G solvation = -4.703639 kcal Electronic energy + Delta-G solvation = -32014.424128 eV Core-core repulsion = 27915.373382 eV Total energy + Delta-G solvation = -4099.050745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39305 -39.87205 -38.25421 -36.00035 -34.94931 -34.41886 -31.86451 -31.25883 -30.60333 -30.03298 -29.38961 -27.40988 -26.37129 -25.46793 -23.68778 -22.94393 -22.00519 -21.59018 -20.93046 -20.64766 -18.88691 -18.26221 -17.71114 -17.07215 -16.13833 -15.91552 -15.30624 -15.18767 -14.92480 -14.58149 -14.44042 -14.32222 -14.13068 -14.07939 -13.56132 -13.50829 -13.23181 -13.11526 -12.87310 -12.69297 -12.62857 -12.26243 -12.04201 -11.92662 -11.89159 -11.38706 -11.30529 -11.23903 -11.04807 -10.90235 -10.84147 -10.70492 -10.63814 -10.24727 -10.18324 -9.93411 -9.58650 -9.49334 -9.00449 -8.86718 -8.52501 -8.40543 -8.10254 -6.72742 -5.83427 -3.27002 1.81706 2.37600 2.98474 3.33646 3.41667 3.42843 3.43592 3.67914 4.28583 4.43616 4.59282 4.78443 4.88870 4.96099 5.00659 5.02926 5.23461 5.25090 5.35917 5.36541 5.46092 5.47171 5.53257 5.65918 5.69224 5.73561 5.80662 5.82407 5.85022 5.90844 5.92147 6.03549 6.06675 6.15769 6.19368 6.24096 6.29424 6.37644 6.43646 6.58324 6.62267 6.67923 6.70854 6.81754 6.90140 7.09677 7.32140 7.48406 7.72199 7.90682 7.98452 8.33606 8.58422 9.11623 9.74677 10.32507 11.24777 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002906 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.380323 B = 9631.740913 C = 9945.735620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.053 4.053 4 C 0.101 3.899 5 N -0.553 5.553 6 H 0.413 0.587 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.220 4.220 10 C 0.602 3.398 11 O -0.551 6.551 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.146 4.146 15 C 0.085 3.915 16 C 0.129 3.871 17 C 0.164 3.836 18 N -0.593 5.593 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.109 3.891 28 C 0.046 3.954 29 O -0.377 6.377 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.097 0.903 47 H 0.255 0.745 48 H 0.026 0.974 49 H 0.062 0.938 50 H 0.082 0.918 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -8.396 19.331 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.091 4.091 4 C -0.017 4.017 5 N -0.148 5.148 6 H 0.250 0.750 7 C -0.149 4.149 8 C -0.195 4.195 9 C -0.230 4.230 10 C 0.392 3.608 11 O -0.431 6.431 12 N -0.340 5.340 13 C -0.023 4.023 14 C -0.184 4.184 15 C 0.044 3.956 16 C 0.006 3.994 17 C 0.038 3.962 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.215 1.215 27 C -0.018 4.018 28 C -0.032 4.032 29 O -0.296 6.296 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.185 0.815 38 H 0.168 0.832 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.115 0.885 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.057 -8.682 19.356 21.213 hybrid contribution 0.440 1.302 0.319 1.411 sum 0.497 -7.379 19.674 21.018 Atomic orbital electron populations 1.21739 0.95573 1.01630 1.01723 1.21441 0.95751 0.95415 1.02611 1.20291 0.86711 0.98699 1.03408 1.20246 0.93283 1.02465 0.85663 1.41547 1.06226 1.58458 1.08607 0.75045 1.21721 0.85583 1.11016 0.96565 1.22366 0.96194 1.07268 0.93665 1.20095 0.93244 1.17574 0.92079 1.16974 0.83577 0.76958 0.83246 1.90739 1.20453 1.47341 1.84519 1.48285 1.12420 1.66765 1.06498 1.22626 0.82071 0.98163 0.99423 1.23204 1.01891 0.99594 0.93678 1.22642 0.90488 0.87842 0.94647 1.21725 0.96591 1.02278 0.78814 1.21193 0.88709 0.96572 0.89741 1.44075 1.25770 1.01487 1.60312 1.19191 0.92154 0.83362 1.43387 0.91368 1.25047 0.95568 0.98500 1.00465 1.70011 0.99169 1.32302 1.53146 0.86225 0.77876 0.85328 0.77365 1.20253 1.21673 1.21513 1.21593 0.95755 0.90361 0.94044 1.23087 0.85985 0.98829 0.95252 1.87679 1.34584 1.31628 1.75695 0.92747 0.93259 0.92170 0.90091 0.93001 0.91692 0.88605 0.81508 0.83213 0.91715 0.90182 0.89656 0.89537 0.89869 0.90800 0.95311 0.88513 0.93507 0.95624 0.91965 0.90013 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.11 -1.21 5.84 -26.73 -0.16 -1.37 16 3 C -0.05 -0.57 4.98 -27.88 -0.14 -0.71 16 4 C 0.10 1.19 6.42 -81.88 -0.53 0.67 16 5 N -0.55 -4.76 5.90 -9.11 -0.05 -4.81 16 6 H 0.41 2.14 8.96 -40.82 -0.37 1.77 16 7 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 8 C -0.17 -1.99 9.08 -37.50 -0.34 -2.33 16 9 C -0.22 -3.15 6.04 -103.35 -0.62 -3.77 16 10 C 0.60 10.45 7.75 -12.59 -0.10 10.35 16 11 O -0.55 -10.72 14.78 5.25 0.08 -10.65 16 12 N -0.61 -10.40 3.33 -172.00 -0.57 -10.98 16 13 C 0.10 1.48 5.30 -2.43 -0.01 1.47 16 14 C -0.15 -2.51 5.91 -24.87 -0.15 -2.66 16 15 C 0.09 1.66 0.83 -89.73 -0.07 1.58 16 16 C 0.13 2.41 6.25 -3.32 -0.02 2.39 16 17 C 0.16 3.86 3.93 -3.85 -0.02 3.84 16 18 N -0.59 -14.41 2.94 -172.17 -0.51 -14.91 16 19 C -0.25 -6.65 9.66 -15.06 -0.15 -6.79 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 22 N -0.90 -25.64 11.12 55.49 0.62 -25.02 16 23 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.11 2.23 6.72 -3.53 -0.02 2.21 16 28 C 0.05 0.81 6.76 37.30 0.25 1.06 16 29 O -0.38 -7.28 10.23 -35.23 -0.36 -7.64 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.10 7.10 -51.93 -0.37 0.73 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.25 7.37 -51.93 -0.38 0.86 16 37 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.15 1.59 5.78 -52.49 -0.30 1.29 16 39 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 40 H 0.08 1.06 5.81 -51.93 -0.30 0.76 16 41 H 0.08 1.59 7.86 -51.93 -0.41 1.18 16 42 H 0.09 1.46 5.98 -51.93 -0.31 1.14 16 43 H 0.08 1.63 7.79 -51.93 -0.40 1.22 16 44 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 2.51 5.99 -51.93 -0.31 2.20 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 49 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 50 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.05 0.80 6.13 -51.93 -0.32 0.48 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -32.27 393.51 -9.96 -42.22 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.07 Total: 5.18 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.99 Total: 4.53 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.52 Total: -55.73 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.28 Total: -18.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.27 -9.96 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972512649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.520 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds