Wall clock time and date at job start Wed Apr 1 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47174 * 2 1 4 4 C 1.50706 * 109.46984 * 180.02562 * 3 2 1 5 5 N 1.34656 * 125.79947 * 264.97965 * 4 3 2 6 6 H 0.97004 * 124.84956 * 359.97438 * 5 4 3 7 7 C 1.36443 * 110.29903 * 180.02562 * 5 4 3 8 8 C 1.34490 * 108.85387 * 359.74479 * 7 5 4 9 9 C 1.36764 * 125.80398 * 85.00283 * 4 3 2 10 10 C 1.47268 * 126.94245 * 359.93811 * 9 4 3 11 11 O 1.21627 * 119.99964 * 338.55283 * 10 9 4 12 12 N 1.34770 * 119.99939 * 158.54720 * 10 9 4 13 13 C 1.47494 * 125.66579 * 4.89750 * 12 10 9 14 14 C 1.55021 * 104.89812 * 203.99812 * 13 12 10 15 15 C 1.54516 * 101.52172 * 323.62142 * 14 13 12 16 16 C 1.47197 * 125.66185 * 184.86883 * 12 10 9 17 17 C 1.52514 * 110.05114 * 153.10258 * 15 14 13 18 18 N 1.47306 * 108.38576 * 72.02366 * 17 15 14 19 19 C 1.36936 * 121.05988 * 229.38115 * 18 17 15 20 20 H 1.08002 * 119.99824 * 153.55781 * 19 18 17 21 21 C 1.38809 * 120.00022 * 333.55785 * 19 18 17 22 22 N 1.31616 * 120.00294 * 344.09177 * 21 19 18 23 23 Si 1.86798 * 119.99952 * 164.09117 * 21 19 18 24 24 H 1.48500 * 109.47440 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47400 * 120.00094 * 23 21 19 26 26 H 1.48499 * 109.47390 * 240.00129 * 23 21 19 27 27 C 1.47169 * 117.87804 * 49.40640 * 18 17 15 28 28 C 1.53277 * 108.54647 * 308.89378 * 27 18 17 29 29 O 1.42071 * 110.33595 * 276.05045 * 15 14 13 30 30 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46734 * 300.00157 * 1 2 3 32 32 H 1.09001 * 109.46895 * 59.99879 * 1 2 3 33 33 H 1.09004 * 109.47292 * 240.00363 * 2 1 3 34 34 H 1.08995 * 109.47755 * 120.00122 * 2 1 3 35 35 H 1.08994 * 109.46956 * 60.00526 * 3 2 1 36 36 H 1.08993 * 109.46982 * 299.99887 * 3 2 1 37 37 H 1.08004 * 125.57450 * 180.02562 * 7 5 4 38 38 H 1.08002 * 126.83405 * 180.25017 * 8 7 5 39 39 H 1.09003 * 110.35191 * 85.14606 * 13 12 10 40 40 H 1.08998 * 110.35518 * 322.85162 * 13 12 10 41 41 H 1.08994 * 111.01268 * 81.68028 * 14 13 12 42 42 H 1.08994 * 111.01552 * 205.52843 * 14 13 12 43 43 H 1.08994 * 109.91058 * 59.14524 * 16 12 10 44 44 H 1.08996 * 110.06495 * 297.96663 * 16 12 10 45 45 H 1.09006 * 109.67754 * 191.74624 * 17 15 14 46 46 H 1.08995 * 109.68765 * 312.26001 * 17 15 14 47 47 H 0.97000 * 120.00532 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.62863 * 68.61515 * 27 18 17 49 49 H 1.09000 * 109.62496 * 188.98609 * 27 18 17 50 50 H 1.09002 * 109.50692 * 172.79832 * 28 27 18 51 51 H 1.08995 * 109.51058 * 292.94689 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3352 1.5379 1.0870 6 1 4.0142 1.6182 1.9989 7 6 5.6498 1.5066 0.7232 8 6 5.7279 1.3840 -0.6139 9 6 4.3467 1.3460 -1.1060 10 6 3.9093 1.2225 -2.5068 11 8 2.7929 0.8125 -2.7613 12 7 4.7460 1.5638 -3.5066 13 6 6.1532 1.9761 -3.3473 14 6 6.4663 2.8207 -4.6090 15 6 5.6568 2.0712 -5.6908 16 6 4.4075 1.5865 -4.9389 17 6 5.2691 3.0299 -6.8118 18 7 6.4793 3.3505 -7.5882 19 6 6.8073 4.6472 -7.8818 20 1 7.8390 4.9179 -8.0518 21 6 5.8141 5.6136 -7.9609 22 7 4.5526 5.2536 -8.0677 23 14 6.2677 7.4251 -7.9158 24 1 7.7410 7.5635 -7.7916 25 1 5.8123 8.0808 -9.1679 26 1 5.6105 8.0711 -6.7514 27 6 7.3241 2.2328 -8.0386 28 6 7.6304 1.3367 -6.8334 29 8 6.4036 0.9721 -6.1934 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 6.4904 1.5655 1.3988 38 1 6.6285 1.3272 -1.2073 39 1 6.8022 1.1013 -3.3061 40 1 6.2719 2.5800 -2.4478 41 1 6.1095 3.8440 -4.4927 42 1 7.5322 2.8039 -4.8360 43 1 3.5793 2.2732 -5.1137 44 1 4.1369 0.5857 -5.2751 45 1 4.5314 2.5573 -7.4603 46 1 4.8526 3.9429 -6.3865 47 1 3.8585 5.9289 -8.1234 48 1 6.7951 1.6569 -8.7980 49 1 8.2534 2.6212 -8.4553 50 1 8.1466 0.4377 -7.1702 51 1 8.2620 1.8777 -6.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972512649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:31 Heat of formation + Delta-G solvation = -25.288223 kcal Electronic energy + Delta-G solvation = -32015.316742 eV Core-core repulsion = 27915.373382 eV Total energy + Delta-G solvation = -4099.943360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28411 -41.32389 -39.66498 -37.45307 -36.25911 -35.79802 -33.29642 -33.08851 -31.72754 -30.90546 -30.77610 -29.07819 -27.69609 -26.76119 -25.30773 -24.38250 -23.33869 -22.63772 -22.15472 -21.58934 -20.46081 -19.48004 -18.95053 -18.56982 -17.52351 -17.37724 -16.90618 -16.39912 -16.20424 -15.95319 -15.81310 -15.69055 -15.41410 -15.18897 -15.02599 -14.86022 -14.56569 -14.23364 -14.19565 -14.06590 -13.75184 -13.59437 -13.37457 -13.30586 -13.05227 -12.80210 -12.70880 -12.61983 -12.46533 -12.32070 -12.21786 -12.10116 -12.09684 -11.81475 -11.74644 -11.55060 -11.13569 -10.93837 -10.74549 -10.45967 -9.79465 -9.62242 -9.05803 -8.71670 -7.88448 -5.35690 0.79213 1.46259 1.48377 1.58615 1.58732 1.94113 2.42719 2.47906 2.50636 2.78388 3.24833 3.39916 3.62573 3.74466 3.80577 4.00068 4.04259 4.11020 4.18108 4.25690 4.33457 4.35627 4.40403 4.44187 4.53125 4.56112 4.59167 4.66619 4.69668 4.72812 4.80026 4.83568 4.93432 4.94381 5.02284 5.04564 5.06275 5.11565 5.16950 5.23263 5.27232 5.30028 5.38213 5.45447 5.51348 5.62901 5.81840 6.03378 6.30412 6.40622 6.61070 6.72472 7.07056 7.26893 7.76314 8.31541 9.17926 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002906 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.380323 B = 9631.740913 C = 9945.735620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.052 4.052 4 C 0.101 3.899 5 N -0.535 5.535 6 H 0.433 0.567 7 C 0.004 3.996 8 C -0.195 4.195 9 C -0.259 4.259 10 C 0.592 3.408 11 O -0.586 6.586 12 N -0.611 5.611 13 C 0.112 3.888 14 C -0.137 4.137 15 C 0.097 3.903 16 C 0.134 3.866 17 C 0.177 3.823 18 N -0.608 5.608 19 C -0.255 4.255 20 H 0.077 0.923 21 C -0.052 4.052 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.260 1.260 25 H -0.296 1.296 26 H -0.292 1.292 27 C 0.102 3.898 28 C 0.052 3.948 29 O -0.383 6.383 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.211 0.789 38 H 0.158 0.842 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.063 0.937 45 H -0.011 1.011 46 H 0.066 0.934 47 H 0.249 0.751 48 H 0.012 0.988 49 H 0.077 0.923 50 H 0.120 0.880 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -8.587 22.929 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.090 4.090 4 C -0.019 4.019 5 N -0.131 5.131 6 H 0.274 0.726 7 C -0.123 4.123 8 C -0.218 4.218 9 C -0.269 4.269 10 C 0.385 3.615 11 O -0.469 6.469 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.175 4.175 15 C 0.055 3.945 16 C 0.010 3.990 17 C 0.050 3.950 18 N -0.332 5.332 19 C -0.385 4.385 20 H 0.095 0.905 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.223 1.223 26 H -0.219 1.219 27 C -0.023 4.023 28 C -0.025 4.025 29 O -0.302 6.302 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.176 0.824 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.007 0.993 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.095 0.905 50 H 0.137 0.863 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.857 -8.889 22.987 24.811 hybrid contribution -0.418 1.305 -0.834 1.604 sum 2.439 -7.585 22.153 23.542 Atomic orbital electron populations 1.21723 0.94661 1.02105 1.01930 1.21363 0.96551 0.95148 1.01627 1.20262 0.86555 0.98718 1.03439 1.20271 0.93665 1.01823 0.86131 1.41550 1.05969 1.56747 1.08856 0.72645 1.22334 0.86364 1.07491 0.96150 1.22516 0.95078 1.09132 0.95114 1.20053 0.95564 1.20681 0.90624 1.17636 0.83076 0.76118 0.84623 1.90708 1.21976 1.48935 1.85247 1.48361 1.13575 1.67034 1.05412 1.22694 0.80802 0.98639 0.98849 1.23098 1.01897 0.98636 0.93907 1.22266 0.91231 0.87345 0.93656 1.21461 0.95946 1.00972 0.80628 1.20875 0.88018 0.95840 0.90238 1.44333 1.26037 1.02110 1.60766 1.19560 0.92457 0.84410 1.42027 0.90512 1.25827 0.95479 1.02484 1.00931 1.70190 1.00157 1.33160 1.54986 0.85203 0.78328 0.80347 0.76574 1.18433 1.22318 1.21889 1.21817 0.95398 0.89677 0.95424 1.23203 0.85402 1.00008 0.93897 1.87684 1.35427 1.31322 1.75801 0.92178 0.90969 0.93989 0.93860 0.91025 0.88390 0.91750 0.77215 0.82440 0.89886 0.87927 0.91525 0.88311 0.92049 0.91865 0.99253 0.91537 0.94194 0.96987 0.90490 0.86253 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.94 16 2 C -0.11 -2.28 5.84 30.60 0.18 -2.10 16 3 C -0.05 -1.08 4.98 29.85 0.15 -0.93 16 4 C 0.10 2.22 6.42 41.78 0.27 2.48 16 5 N -0.53 -7.16 5.90 -182.72 -1.08 -8.23 16 6 H 0.43 2.44 8.96 -92.71 -0.83 1.61 16 7 C 0.00 0.06 11.89 83.12 0.99 1.05 16 8 C -0.20 -4.00 9.08 23.62 0.21 -3.78 16 9 C -0.26 -7.23 6.04 -19.04 -0.12 -7.35 16 10 C 0.59 21.37 7.75 86.62 0.67 22.04 16 11 O -0.59 -24.52 14.78 -4.12 -0.06 -24.58 16 12 N -0.61 -21.54 3.33 -816.33 -2.72 -24.26 16 13 C 0.11 3.18 5.30 86.88 0.46 3.64 16 14 C -0.14 -4.67 5.91 31.80 0.19 -4.49 16 15 C 0.10 3.86 0.83 -10.22 -0.01 3.85 16 16 C 0.13 5.36 6.25 86.47 0.54 5.90 16 17 C 0.18 8.80 3.93 86.06 0.34 9.14 16 18 N -0.61 -30.17 2.94 -698.62 -2.05 -32.22 16 19 C -0.25 -13.57 9.66 84.03 0.81 -12.76 16 20 H 0.08 3.90 7.88 -2.91 -0.02 3.88 16 21 C -0.05 -2.87 4.97 84.86 0.42 -2.45 16 22 N -0.94 -55.96 11.12 21.65 0.24 -55.72 16 23 Si 0.97 44.25 29.58 68.60 2.03 46.28 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 C 0.10 4.13 6.72 86.34 0.58 4.71 16 28 C 0.05 1.69 6.76 72.07 0.49 2.18 16 29 O -0.38 -14.59 10.23 -148.98 -1.52 -16.11 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 1.24 7.10 -2.38 -0.02 1.22 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.77 7.37 -2.39 -0.02 1.75 16 37 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.16 2.85 5.78 -2.91 -0.02 2.83 16 39 H 0.08 2.10 7.88 -2.39 -0.02 2.08 16 40 H 0.10 2.50 5.81 -2.39 -0.01 2.49 16 41 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 42 H 0.10 3.11 5.98 -2.39 -0.01 3.10 16 43 H 0.06 2.67 7.79 -2.39 -0.02 2.65 16 44 H 0.06 2.62 8.06 -2.39 -0.02 2.60 16 45 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 46 H 0.07 3.70 5.99 -2.39 -0.01 3.69 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.08 2.85 7.96 -2.39 -0.02 2.83 16 50 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 51 H 0.06 1.92 6.13 -2.39 -0.01 1.91 16 Total: -1.00 -75.58 393.51 1.83 -73.74 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.11 Total: 21.92 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.89 Total: 19.20 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -5.61 Total: -120.44 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.58 Total: -40.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.58 1.83 -73.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972512649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.455 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds