Wall clock time and date at job start Wed Apr 1 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47132 * 119.99865 * 2 1 3 5 5 C 1.38355 * 119.40971 * 274.99963 * 4 2 1 6 6 C 1.38342 * 119.45680 * 180.27812 * 5 4 2 7 7 C 1.39984 * 118.35052 * 359.48264 * 6 5 4 8 8 C 1.47520 * 120.59680 * 180.26213 * 7 6 5 9 9 O 1.21597 * 120.00193 * 180.27487 * 8 7 6 10 10 N 1.34776 * 120.00273 * 0.27578 * 8 7 6 11 11 C 1.46496 * 120.00335 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88463 * 325.70192 * 11 10 8 13 13 C 1.54903 * 111.00649 * 89.58124 * 11 10 8 14 14 N 1.47531 * 104.78174 * 81.09017 * 13 11 10 15 15 C 1.36934 * 125.63329 * 204.08689 * 14 13 11 16 16 H 1.08003 * 119.99992 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00293 * 0.04095 * 15 14 13 18 18 N 1.31611 * 119.99915 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46854 * 59.99889 * 19 17 15 21 21 H 1.48493 * 109.46773 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47193 * 299.99972 * 19 17 15 23 23 C 1.47013 * 108.71603 * 24.12090 * 14 13 11 24 24 C 1.54331 * 107.27168 * 358.94335 * 23 14 13 25 25 C 1.53003 * 110.72005 * 219.44476 * 24 23 14 26 26 C 1.52992 * 110.71795 * 96.17048 * 24 23 14 27 27 C 1.40279 * 118.80534 * 0.53441 * 7 6 5 28 28 O 1.35426 * 119.80312 * 179.72683 * 27 7 6 29 29 N 1.31882 * 119.40433 * 95.02113 * 4 2 1 30 30 H 1.09004 * 109.46940 * 300.00132 * 1 2 3 31 31 H 1.08997 * 109.47315 * 60.00083 * 1 2 3 32 32 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46940 * 239.99868 * 2 1 3 34 34 H 1.08997 * 109.47273 * 59.99639 * 3 2 1 35 35 H 1.08995 * 109.47521 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.46617 * 300.00060 * 3 2 1 37 37 H 1.08002 * 120.26680 * 359.97438 * 5 4 2 38 38 H 1.08001 * 120.82340 * 179.72367 * 6 5 4 39 39 H 0.97006 * 119.99904 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.37347 * 199.90697 * 13 11 10 41 41 H 1.09003 * 110.37056 * 322.22978 * 13 11 10 42 42 H 0.97001 * 120.00298 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88287 * 239.52744 * 23 14 13 44 44 H 1.08996 * 110.01025 * 118.43069 * 23 14 13 45 45 H 1.08997 * 109.46757 * 173.52221 * 25 24 23 46 46 H 1.08997 * 109.47098 * 293.51940 * 25 24 23 47 47 H 1.09002 * 109.47219 * 53.51905 * 25 24 23 48 48 H 1.08999 * 109.47524 * 306.47365 * 26 24 23 49 49 H 1.08999 * 109.47675 * 66.48349 * 26 24 23 50 50 H 1.09001 * 109.46789 * 186.47915 * 26 24 23 51 51 H 0.96700 * 114.00273 * 269.98161 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1597 -0.0083 2.4158 6 6 2.6263 -0.6580 3.5446 7 6 2.9443 -2.0176 3.4452 8 6 3.4404 -2.7605 4.6192 9 8 3.7181 -3.9401 4.5195 10 7 3.5857 -2.1318 5.8024 11 6 4.0778 -2.8696 6.9685 12 1 3.7277 -3.9017 6.9513 13 6 5.6234 -2.8089 7.0522 14 7 5.9159 -1.5002 7.6673 15 6 7.0843 -0.7989 7.5328 16 1 7.2013 0.1550 8.0257 17 6 8.1182 -1.3136 6.7627 18 7 7.9756 -2.4760 6.1622 19 14 9.7123 -0.3570 6.5799 20 1 10.3260 -0.1577 7.9174 21 1 10.6491 -1.1173 5.7142 22 1 9.4290 0.9639 5.9633 23 6 4.7459 -1.0743 8.4489 24 6 3.6654 -2.1643 8.2875 25 6 2.2773 -1.5350 8.1538 26 6 3.7062 -3.1448 9.4613 27 6 2.7883 -2.6596 2.2077 28 8 3.0953 -3.9731 2.0874 29 7 2.3429 -1.9900 1.1579 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.9018 1.0396 2.4583 38 1 2.7385 -0.1304 4.4802 39 1 3.3638 -1.1908 5.8822 40 1 6.0013 -3.6160 7.6797 41 1 6.0599 -2.8664 6.0551 42 1 8.6982 -2.8360 5.6243 43 1 4.3726 -0.1232 8.0692 44 1 5.0163 -0.9731 9.5000 45 1 1.5468 -2.3114 7.9265 46 1 2.0083 -1.0460 9.0901 47 1 2.2878 -0.7992 7.3496 48 1 4.7172 -3.5365 9.5726 49 1 3.4135 -2.6292 10.3759 50 1 3.0167 -3.9675 9.2715 51 1 4.0141 -4.1410 1.8368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977245286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:26 Heat of formation + Delta-G solvation = -19.490842 kcal Electronic energy + Delta-G solvation = -31913.726241 eV Core-core repulsion = 27814.034275 eV Total energy + Delta-G solvation = -4099.691966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91005 -39.46615 -37.95072 -37.19038 -35.21987 -33.85717 -33.24424 -32.32190 -30.72504 -29.84118 -28.08559 -27.45462 -26.83981 -25.64343 -24.91293 -23.51743 -23.09629 -21.36735 -20.56165 -19.79511 -18.94550 -18.28274 -17.37826 -17.07435 -16.71881 -15.84150 -15.57234 -15.27937 -14.74518 -14.59001 -14.40768 -14.01743 -13.83717 -13.78974 -13.75474 -13.48664 -13.22225 -13.10308 -12.67772 -12.49192 -12.30419 -12.18177 -11.93689 -11.78065 -11.76624 -11.58058 -11.41378 -11.31465 -11.19743 -11.13523 -11.02285 -10.78886 -10.43797 -10.25435 -9.97675 -9.96272 -9.85531 -9.81646 -9.70428 -9.23469 -8.86856 -8.69984 -8.34430 -6.83600 -5.65078 -3.08285 0.60081 1.05637 3.05803 3.37258 3.38135 3.42398 3.44322 3.64190 3.84984 4.28909 4.46418 4.48481 4.74783 4.80549 4.85311 4.92925 4.97258 5.04036 5.21829 5.26398 5.29519 5.38829 5.41518 5.49931 5.52300 5.58457 5.61441 5.68249 5.76688 5.77665 5.86224 5.93146 5.95490 6.00282 6.04387 6.09084 6.16390 6.23618 6.33586 6.40220 6.47061 6.59093 6.67697 6.72443 6.96529 7.47142 7.58111 7.59757 7.81970 7.85871 7.99670 8.36666 8.66843 9.19739 9.81436 10.45640 11.37348 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.003475 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.542151 B = 8055.734656 C = 9173.742869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.149 4.149 4 C 0.176 3.824 5 C -0.190 4.190 6 C -0.026 4.026 7 C -0.197 4.197 8 C 0.561 3.439 9 O -0.522 6.522 10 N -0.696 5.696 11 C 0.125 3.875 12 H 0.088 0.912 13 C 0.147 3.853 14 N -0.601 5.601 15 C -0.226 4.226 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.917 5.917 19 Si 0.912 3.088 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.143 3.857 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.128 4.128 27 C 0.372 3.628 28 O -0.461 6.461 29 N -0.509 5.509 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.393 0.607 40 H 0.021 0.979 41 H 0.113 0.887 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 6.365 -7.092 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.038 3.962 5 C -0.210 4.210 6 C -0.052 4.052 7 C -0.204 4.204 8 C 0.346 3.654 9 O -0.399 6.399 10 N -0.347 5.347 11 C 0.020 3.980 12 H 0.106 0.894 13 C 0.021 3.979 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.017 3.983 24 C -0.089 4.089 25 C -0.188 4.188 26 C -0.186 4.186 27 C 0.192 3.808 28 O -0.268 6.268 29 N -0.228 5.228 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.229 0.771 40 H 0.039 0.961 41 H 0.130 0.870 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -15.859 4.869 -7.843 18.350 hybrid contribution 1.471 1.413 0.752 2.174 sum -14.389 6.282 -7.091 17.227 Atomic orbital electron populations 1.21804 0.93347 1.02506 1.02242 1.20132 0.96357 0.95514 0.94864 1.21945 1.01680 0.94536 1.02467 1.21127 0.91963 0.88314 0.94815 1.21882 1.04095 1.02092 0.92937 1.21746 0.91803 0.92469 0.99162 1.21254 1.07504 0.95078 0.96576 1.17666 0.78529 0.86795 0.82425 1.90800 1.49976 1.15134 1.83993 1.45679 1.66083 1.13563 1.09368 1.22538 0.98490 0.94645 0.82336 0.89410 1.22327 0.87216 0.86543 1.01803 1.44475 1.12206 1.20105 1.55903 1.18977 0.90037 1.00951 1.25504 0.90652 1.24781 0.98371 0.97105 1.00116 1.69791 1.32040 1.18262 1.36367 0.86207 0.83236 0.78795 0.77545 1.21233 1.21599 1.21274 1.21400 0.87671 0.94003 0.95207 1.21848 0.95052 0.96782 0.95188 1.21716 0.95882 1.00126 1.01098 1.21683 1.02434 0.98109 0.96368 1.19111 0.90689 0.84311 0.86696 1.84675 1.34544 1.16755 1.90858 1.67084 1.14516 1.08949 1.32224 0.92336 0.91713 0.92194 0.88965 0.91918 0.92077 0.91684 0.83829 0.84061 0.77146 0.96091 0.86959 0.93651 0.96207 0.95836 0.92752 0.92652 0.93154 0.91707 0.92689 0.93022 0.73315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.05 -0.43 3.23 -91.77 -0.30 -0.73 16 3 C -0.15 -1.02 8.61 37.16 0.32 -0.70 16 4 C 0.18 2.10 5.79 -82.53 -0.48 1.62 16 5 C -0.19 -2.05 9.15 -39.50 -0.36 -2.42 16 6 C -0.03 -0.32 9.64 -38.89 -0.37 -0.70 16 7 C -0.20 -3.13 5.90 -104.69 -0.62 -3.75 16 8 C 0.56 10.44 7.77 -12.48 -0.10 10.34 16 9 O -0.52 -11.37 14.88 -16.49 -0.25 -11.61 16 10 N -0.70 -12.14 4.58 -52.78 -0.24 -12.38 16 11 C 0.13 2.38 2.61 -65.79 -0.17 2.21 16 12 H 0.09 1.72 7.53 -51.93 -0.39 1.33 16 13 C 0.15 3.54 5.28 -2.47 -0.01 3.52 16 14 N -0.60 -14.67 3.40 -170.00 -0.58 -15.25 16 15 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16 16 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.14 2.79 6.41 -3.07 -0.02 2.77 16 24 C -0.09 -1.42 0.80 -152.67 -0.12 -1.54 16 25 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 26 C -0.13 -1.91 8.41 37.15 0.31 -1.60 16 27 C 0.37 5.98 7.77 -16.61 -0.13 5.85 16 28 O -0.46 -7.52 11.66 -39.74 -0.46 -7.98 16 29 N -0.51 -7.47 10.28 -9.21 -0.09 -7.56 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.37 6.47 -51.93 -0.34 0.04 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.14 1.11 6.28 -52.49 -0.33 0.78 16 38 H 0.14 1.49 6.52 -52.49 -0.34 1.14 16 39 H 0.39 6.04 5.13 -40.82 -0.21 5.83 16 40 H 0.02 0.55 7.80 -51.93 -0.41 0.15 16 41 H 0.11 3.16 5.88 -51.93 -0.31 2.86 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.02 0.38 7.76 -51.93 -0.40 -0.03 16 44 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.61 6.42 -51.93 -0.33 0.27 16 48 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.41 5.27 9.06 45.56 0.41 5.68 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -33.58 401.95 -8.90 -42.48 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.22 Total: 9.34 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.66 Total: 6.19 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.35 Total: -61.35 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.71 Total: -19.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.58 -8.90 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977245286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.992 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds