Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47132 * 119.99865 * 2 1 3 5 5 C 1.38355 * 119.40971 * 274.99963 * 4 2 1 6 6 C 1.38342 * 119.45680 * 180.27812 * 5 4 2 7 7 C 1.39984 * 118.35052 * 359.48264 * 6 5 4 8 8 C 1.47520 * 120.59680 * 180.26213 * 7 6 5 9 9 O 1.21597 * 120.00193 * 180.27487 * 8 7 6 10 10 N 1.34776 * 120.00273 * 0.27578 * 8 7 6 11 11 C 1.46496 * 120.00335 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88463 * 325.70192 * 11 10 8 13 13 C 1.54903 * 111.00649 * 89.58124 * 11 10 8 14 14 N 1.47531 * 104.78174 * 81.09017 * 13 11 10 15 15 C 1.36934 * 125.63329 * 204.08689 * 14 13 11 16 16 H 1.08003 * 119.99992 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00293 * 0.04095 * 15 14 13 18 18 N 1.31611 * 119.99915 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46854 * 59.99889 * 19 17 15 21 21 H 1.48493 * 109.46773 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47193 * 299.99972 * 19 17 15 23 23 C 1.47013 * 108.71603 * 24.12090 * 14 13 11 24 24 C 1.54331 * 107.27168 * 358.94335 * 23 14 13 25 25 C 1.53003 * 110.72005 * 219.44476 * 24 23 14 26 26 C 1.52992 * 110.71795 * 96.17048 * 24 23 14 27 27 C 1.40279 * 118.80534 * 0.53441 * 7 6 5 28 28 O 1.35426 * 119.80312 * 179.72683 * 27 7 6 29 29 N 1.31882 * 119.40433 * 95.02113 * 4 2 1 30 30 H 1.09004 * 109.46940 * 300.00132 * 1 2 3 31 31 H 1.08997 * 109.47315 * 60.00083 * 1 2 3 32 32 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46940 * 239.99868 * 2 1 3 34 34 H 1.08997 * 109.47273 * 59.99639 * 3 2 1 35 35 H 1.08995 * 109.47521 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.46617 * 300.00060 * 3 2 1 37 37 H 1.08002 * 120.26680 * 359.97438 * 5 4 2 38 38 H 1.08001 * 120.82340 * 179.72367 * 6 5 4 39 39 H 0.97006 * 119.99904 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.37347 * 199.90697 * 13 11 10 41 41 H 1.09003 * 110.37056 * 322.22978 * 13 11 10 42 42 H 0.97001 * 120.00298 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88287 * 239.52744 * 23 14 13 44 44 H 1.08996 * 110.01025 * 118.43069 * 23 14 13 45 45 H 1.08997 * 109.46757 * 173.52221 * 25 24 23 46 46 H 1.08997 * 109.47098 * 293.51940 * 25 24 23 47 47 H 1.09002 * 109.47219 * 53.51905 * 25 24 23 48 48 H 1.08999 * 109.47524 * 306.47365 * 26 24 23 49 49 H 1.08999 * 109.47675 * 66.48349 * 26 24 23 50 50 H 1.09001 * 109.46789 * 186.47915 * 26 24 23 51 51 H 0.96700 * 114.00273 * 269.98161 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1597 -0.0083 2.4158 6 6 2.6263 -0.6580 3.5446 7 6 2.9443 -2.0176 3.4452 8 6 3.4404 -2.7605 4.6192 9 8 3.7181 -3.9401 4.5195 10 7 3.5857 -2.1318 5.8024 11 6 4.0778 -2.8696 6.9685 12 1 3.7277 -3.9017 6.9513 13 6 5.6234 -2.8089 7.0522 14 7 5.9159 -1.5002 7.6673 15 6 7.0843 -0.7989 7.5328 16 1 7.2013 0.1550 8.0257 17 6 8.1182 -1.3136 6.7627 18 7 7.9756 -2.4760 6.1622 19 14 9.7123 -0.3570 6.5799 20 1 10.3260 -0.1577 7.9174 21 1 10.6491 -1.1173 5.7142 22 1 9.4290 0.9639 5.9633 23 6 4.7459 -1.0743 8.4489 24 6 3.6654 -2.1643 8.2875 25 6 2.2773 -1.5350 8.1538 26 6 3.7062 -3.1448 9.4613 27 6 2.7883 -2.6596 2.2077 28 8 3.0953 -3.9731 2.0874 29 7 2.3429 -1.9900 1.1579 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.9018 1.0396 2.4583 38 1 2.7385 -0.1304 4.4802 39 1 3.3638 -1.1908 5.8822 40 1 6.0013 -3.6160 7.6797 41 1 6.0599 -2.8664 6.0551 42 1 8.6982 -2.8360 5.6243 43 1 4.3726 -0.1232 8.0692 44 1 5.0163 -0.9731 9.5000 45 1 1.5468 -2.3114 7.9265 46 1 2.0083 -1.0460 9.0901 47 1 2.2878 -0.7992 7.3496 48 1 4.7172 -3.5365 9.5726 49 1 3.4135 -2.6292 10.3759 50 1 3.0167 -3.9675 9.2715 51 1 4.0141 -4.1410 1.8368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977245286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = -43.484675 kcal Electronic energy + Delta-G solvation = -31914.766692 eV Core-core repulsion = 27814.034275 eV Total energy + Delta-G solvation = -4100.732417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04976 -40.88659 -39.33391 -38.41055 -36.10124 -35.64800 -34.64971 -33.46989 -32.59771 -30.92760 -29.66567 -28.05129 -28.00105 -27.40832 -26.04798 -24.95906 -24.27395 -22.68299 -21.88350 -21.23672 -20.33366 -19.43143 -18.70807 -18.65009 -18.16017 -17.09134 -16.88667 -16.62426 -16.22695 -15.94183 -15.68474 -15.38402 -15.23105 -15.07250 -14.68004 -14.62046 -14.50734 -14.10449 -13.90978 -13.73362 -13.64742 -13.38183 -13.03733 -13.00788 -12.84933 -12.83296 -12.80062 -12.62267 -12.56411 -12.39309 -12.16645 -12.04671 -11.81583 -11.77987 -11.75954 -11.44902 -11.36221 -11.13800 -11.02104 -10.75865 -10.43786 -10.05842 -9.80730 -8.83982 -7.74639 -5.19750 -0.49686 0.04252 1.44552 1.47374 1.53988 1.81352 2.10427 2.44137 2.49193 2.71623 3.34443 3.36508 3.54207 3.61005 3.67511 3.72120 3.90448 3.97459 4.06965 4.10924 4.13829 4.26465 4.41249 4.42102 4.51805 4.59574 4.74523 4.78036 4.82802 4.84730 4.87720 4.89498 4.92987 4.97644 5.03836 5.04629 5.10249 5.20322 5.21718 5.29448 5.33691 5.36490 5.43618 5.45675 5.49136 5.53241 5.68073 5.83624 6.31432 6.45750 6.57449 6.79247 7.09719 7.25138 7.80021 8.43971 9.25505 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.003475 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.542151 B = 8055.734656 C = 9173.742869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C -0.146 4.146 4 C 0.174 3.826 5 C -0.176 4.176 6 C -0.021 4.021 7 C -0.222 4.222 8 C 0.557 3.443 9 O -0.566 6.566 10 N -0.686 5.686 11 C 0.137 3.863 12 H 0.078 0.922 13 C 0.156 3.844 14 N -0.617 5.617 15 C -0.232 4.232 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.948 5.948 19 Si 0.975 3.025 20 H -0.279 1.279 21 H -0.301 1.301 22 H -0.274 1.274 23 C 0.138 3.862 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.127 4.127 27 C 0.352 3.648 28 O -0.479 6.479 29 N -0.528 5.528 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.186 0.814 38 H 0.165 0.835 39 H 0.406 0.594 40 H -0.015 1.015 41 H 0.069 0.931 42 H 0.242 0.758 43 H 0.039 0.961 44 H 0.026 0.974 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.033 0.967 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 10.223 -6.724 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.203 4.203 4 C 0.035 3.965 5 C -0.195 4.195 6 C -0.046 4.046 7 C -0.229 4.229 8 C 0.344 3.656 9 O -0.446 6.446 10 N -0.337 5.337 11 C 0.031 3.969 12 H 0.096 0.904 13 C 0.029 3.971 14 N -0.343 5.343 15 C -0.361 4.361 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.804 3.196 20 H -0.205 1.205 21 H -0.228 1.228 22 H -0.199 1.199 23 C 0.013 3.987 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.185 4.185 27 C 0.173 3.827 28 O -0.289 6.289 29 N -0.248 5.248 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.203 0.797 38 H 0.183 0.817 39 H 0.243 0.757 40 H 0.003 0.997 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -18.368 8.783 -7.448 21.679 hybrid contribution 2.213 0.258 0.600 2.307 sum -16.155 9.042 -6.848 19.739 Atomic orbital electron populations 1.21797 0.92049 1.01837 1.03856 1.20266 0.97271 0.96385 0.92920 1.21952 1.01100 0.93036 1.04210 1.21875 0.90408 0.87513 0.96666 1.22301 1.02054 1.03687 0.91487 1.22044 0.90801 0.90923 1.00872 1.21082 1.09955 0.96580 0.95242 1.18169 0.77647 0.86531 0.83269 1.90767 1.51908 1.17180 1.84715 1.45521 1.65477 1.14032 1.08675 1.22193 0.94786 0.95199 0.84732 0.90393 1.21948 0.90754 0.85846 0.98529 1.44690 1.13061 1.19847 1.56675 1.19406 0.90993 1.01231 1.24511 0.89681 1.25598 1.01669 0.98101 1.00589 1.70108 1.32265 1.20023 1.37424 0.85197 0.79312 0.77705 0.77399 1.20486 1.22758 1.19933 1.21646 0.86809 0.95705 0.94502 1.21834 0.96345 0.95797 0.93484 1.21700 0.93032 1.00571 1.02930 1.21693 1.01124 0.98624 0.97015 1.19299 0.91701 0.84292 0.87419 1.84622 1.35301 1.17844 1.91085 1.67140 1.15293 1.10469 1.31850 0.91212 0.89637 0.94018 0.89860 0.90297 0.93001 0.89895 0.79734 0.81710 0.75659 0.99739 0.91318 0.94864 0.94348 0.95598 0.91820 0.90154 0.92098 0.94779 0.90030 0.91434 0.72564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.18 71.98 0.66 -1.02 16 2 C -0.05 -0.74 3.23 -11.54 -0.04 -0.78 16 3 C -0.15 -1.46 8.61 71.98 0.62 -0.84 16 4 C 0.17 3.82 5.79 42.58 0.25 4.07 16 5 C -0.18 -3.23 9.15 22.32 0.20 -3.03 16 6 C -0.02 -0.47 9.64 22.72 0.22 -0.26 16 7 C -0.22 -7.08 5.90 -19.91 -0.12 -7.20 16 8 C 0.56 21.39 7.77 86.69 0.67 22.06 16 9 O -0.57 -26.23 14.88 16.79 0.25 -25.98 16 10 N -0.69 -23.84 4.58 -439.14 -2.01 -25.85 16 11 C 0.14 5.31 2.61 46.38 0.12 5.43 16 12 H 0.08 3.19 7.53 -2.39 -0.02 3.17 16 13 C 0.16 7.90 5.28 86.83 0.46 8.36 16 14 N -0.62 -30.50 3.40 -691.74 -2.35 -32.85 16 15 C -0.23 -12.67 10.27 84.03 0.86 -11.80 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 18 N -0.95 -58.14 10.09 21.65 0.22 -57.92 16 19 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.14 5.15 6.41 86.73 0.56 5.71 16 24 C -0.07 -2.26 0.80 -50.99 -0.04 -2.30 16 25 C -0.12 -2.71 8.07 71.98 0.58 -2.13 16 26 C -0.13 -3.60 8.41 71.98 0.61 -3.00 16 27 C 0.35 11.72 7.77 85.13 0.66 12.39 16 28 O -0.48 -16.84 11.66 -66.40 -0.77 -17.62 16 29 N -0.53 -15.54 10.28 -296.05 -3.04 -18.59 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 0.54 6.47 -2.39 -0.02 0.53 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.19 1.85 6.28 -2.91 -0.02 1.83 16 38 H 0.17 2.89 6.52 -2.91 -0.02 2.87 16 39 H 0.41 11.72 5.13 -92.70 -0.48 11.24 16 40 H -0.02 -0.86 7.80 -2.39 -0.02 -0.88 16 41 H 0.07 4.14 5.88 -2.39 -0.01 4.12 16 42 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 44 H 0.03 0.97 7.84 -2.39 -0.02 0.95 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 1.20 6.42 -2.39 -0.02 1.19 16 48 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.41 12.07 9.06 -74.06 -0.67 11.39 16 Total: -1.00 -78.81 401.95 0.87 -77.94 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.19 Total: 30.77 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.74 Total: 22.32 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -7.18 Total: -135.20 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.52 Total: -43.60 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -78.81 0.87 -77.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977245286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -78.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds