Wall clock time and date at job start Wed Apr 1 2020 05:14:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53003 * 109.47245 * 2 1
4 4 C 1.50704 * 109.46915 * 119.99514 * 2 1 3
5 5 N 1.30010 * 127.33691 * 299.95973 * 4 2 1
6 6 O 1.20657 * 112.30328 * 180.02562 * 5 4 2
7 7 C 1.33491 * 113.15656 * 359.97438 * 6 5 4
8 8 C 1.37365 * 106.34389 * 0.02562 * 7 6 5
9 9 C 1.47393 * 128.56843 * 179.73701 * 8 7 6
10 10 O 1.21613 * 119.99997 * 180.02562 * 9 8 7
11 11 N 1.34773 * 120.00033 * 0.02999 * 9 8 7
12 12 C 1.46503 * 120.00258 * 179.97438 * 11 9 8
13 13 H 1.08999 * 109.02704 * 35.00289 * 12 11 9
14 14 C 1.52525 * 109.04137 * 276.04167 * 12 11 9
15 15 C 1.53795 * 111.70928 * 185.31764 * 14 12 11
16 16 C 1.51623 * 106.96572 * 57.64701 * 15 14 12
17 17 H 1.08998 * 110.50045 * 55.16454 * 16 15 14
18 18 C 1.53057 * 116.68001 * 183.69999 * 16 15 14
19 19 N 1.48661 * 103.44275 * 155.89182 * 18 16 15
20 20 C 1.36936 * 125.77972 * 155.60198 * 19 18 16
21 21 H 1.08003 * 119.99876 * 180.02562 * 20 19 18
22 22 C 1.38810 * 120.00258 * 0.02562 * 20 19 18
23 23 N 1.31611 * 120.00154 * 359.97438 * 22 20 19
24 24 Si 1.86802 * 119.99883 * 180.02562 * 22 20 19
25 25 H 1.48497 * 109.47210 * 0.02562 * 24 22 20
26 26 H 1.48502 * 109.47113 * 119.99840 * 24 22 20
27 27 H 1.48498 * 109.47136 * 239.99992 * 24 22 20
28 28 C 1.48894 * 108.52272 * 335.22242 * 19 18 16
29 29 C 1.52329 * 105.53881 * 357.43680 * 28 19 18
30 30 H 1.08999 * 109.88352 * 271.57101 * 29 28 19
31 31 C 1.51439 * 117.45348 * 145.04278 * 29 28 19
32 32 H 1.09003 * 109.46748 * 60.00228 * 1 2 3
33 33 H 1.08996 * 109.47183 * 179.97438 * 1 2 3
34 34 H 1.08999 * 109.47088 * 300.00786 * 1 2 3
35 35 H 1.08999 * 109.47542 * 239.99494 * 2 1 3
36 36 H 1.08999 * 109.46959 * 180.02562 * 3 2 1
37 37 H 1.09003 * 109.46603 * 299.99853 * 3 2 1
38 38 H 1.08999 * 109.47263 * 59.99323 * 3 2 1
39 39 H 1.08004 * 126.83070 * 180.02562 * 7 6 5
40 40 H 0.97006 * 120.00238 * 359.97438 * 11 9 8
41 41 H 1.09000 * 109.03838 * 305.96905 * 14 12 11
42 42 H 1.09001 * 109.03316 * 64.82392 * 14 12 11
43 43 H 1.09003 * 110.00512 * 298.26670 * 15 14 12
44 44 H 1.09003 * 109.94510 * 176.99193 * 15 14 12
45 45 H 1.08999 * 110.63050 * 274.38074 * 18 16 15
46 46 H 1.09000 * 110.62506 * 37.40224 * 18 16 15
47 47 H 0.97004 * 120.00073 * 180.02562 * 23 22 20
48 48 H 1.08999 * 110.55871 * 238.32070 * 28 19 18
49 49 H 1.09008 * 110.10765 * 116.31107 * 28 19 18
50 50 H 1.09000 * 109.94157 * 61.34128 * 31 29 28
51 51 H 1.09002 * 109.94114 * 300.10799 * 31 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7103 1.2306
5 7 1.8084 -0.3924 2.4712
6 8 2.3446 -1.1501 3.2420
7 6 3.0296 -2.1207 2.6331
8 6 2.8806 -1.9110 1.2838
9 6 3.4382 -2.6924 0.1653
10 8 3.2049 -2.3636 -0.9820
11 7 4.2065 -3.7714 0.4141
12 6 4.7603 -4.5485 -0.6975
13 1 5.0046 -3.8723 -1.5168
14 6 3.7137 -5.5503 -1.1743
15 6 4.2758 -6.4893 -2.2550
16 6 5.4805 -7.1857 -1.6529
17 1 5.2072 -7.6868 -0.7243
18 6 6.2694 -8.1164 -2.5771
19 7 7.6222 -8.1493 -1.9616
20 6 8.5417 -9.1541 -2.1028
21 1 9.5007 -9.0815 -1.6113
22 6 8.2414 -10.2661 -2.8775
23 7 7.0727 -10.3549 -3.4760
24 14 9.4956 -11.6371 -3.0693
25 1 10.7202 -11.2989 -2.3005
26 1 8.9235 -12.9071 -2.5544
27 1 9.8400 -11.7956 -4.5051
28 6 7.8135 -6.9011 -1.1728
29 6 6.5467 -6.0833 -1.3895
30 1 6.6576 -5.4554 -2.2735
31 6 6.0450 -5.2520 -0.2273
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 -0.3633 0.5139 0.8899
35 1 1.8934 -0.5139 -0.8899
36 1 3.1301 1.4425 -0.0005
37 1 1.6767 1.9563 -0.8900
38 1 1.6767 1.9564 0.8899
39 1 3.5895 -2.9133 3.1071
40 1 4.3929 -4.0335 1.3293
41 1 3.3779 -6.1451 -0.3249
42 1 2.8626 -5.0070 -1.5849
43 1 4.5781 -5.9128 -3.1293
44 1 3.5228 -7.2255 -2.5361
45 1 5.8276 -9.1128 -2.5869
46 1 6.3163 -7.7062 -3.5859
47 1 6.8626 -11.1322 -4.0171
48 1 8.6826 -6.3504 -1.5324
49 1 7.9303 -7.1401 -0.1156
50 1 6.7944 -4.5108 0.0505
51 1 5.8255 -5.8969 0.6236
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000979787467.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:21
Heat of formation + Delta-G solvation = 33.540205 kcal
Electronic energy + Delta-G solvation = -30805.445320 eV
Core-core repulsion = 26708.052952 eV
Total energy + Delta-G solvation = -4097.392368 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-45.27269 -40.26198 -38.85111 -36.64298 -35.67106 -33.87046 -32.84571 -32.01884
-31.78964 -30.58006 -28.77143 -27.49138 -26.42737 -25.41945 -24.46584 -23.96619
-22.07804 -21.35893 -20.73557 -20.19803 -19.79513 -19.44157 -18.49120 -18.02703
-16.88139 -16.71221 -16.19126 -15.18526 -15.11901 -15.06011 -14.92280 -14.41806
-14.30454 -14.14058 -13.80576 -13.62897 -13.59945 -13.32577 -12.55078 -12.51358
-12.32360 -12.12961 -12.09438 -11.92215 -11.71073 -11.65303 -11.62253 -11.36868
-11.15666 -10.96965 -10.84910 -10.69144 -10.54213 -10.28686 -10.27387 -10.12760
-10.03343 -9.92204 -9.89416 -9.61491 -9.32231 -9.06840 -8.65575 -6.82642
-5.63898 -3.04702 0.69139 1.46710 2.52695 2.93207 2.95180 3.39884
3.45279 3.47812 3.64995 3.86852 4.45177 4.48210 4.53744 4.70921
4.78686 4.78878 4.84801 4.85446 5.08160 5.14314 5.29877 5.30555
5.34455 5.40276 5.48851 5.49747 5.57650 5.60218 5.62710 5.64708
5.72451 5.75505 5.88085 6.00269 6.03858 6.11826 6.13210 6.21266
6.24734 6.36084 6.39714 6.54206 6.62035 6.66369 6.84555 7.02375
7.22394 7.55516 7.62074 7.84251 7.86876 7.93319 8.34145 9.21384
9.82194 10.49090 11.40607
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.028532 B = 0.001944 C = 0.001891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.104010 B =14400.185592 C =14800.787671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.027 4.027
3 C -0.142 4.142
4 C 0.079 3.921
5 N -0.355 5.355
6 O 0.097 5.903
7 C -0.008 4.008
8 C -0.251 4.251
9 C 0.594 3.406
10 O -0.526 6.526
11 N -0.718 5.718
12 C 0.150 3.850
13 H 0.088 0.912
14 C -0.125 4.125
15 C -0.099 4.099
16 C -0.115 4.115
17 H 0.069 0.931
18 C 0.164 3.836
19 N -0.609 5.609
20 C -0.219 4.219
21 H 0.077 0.923
22 C -0.014 4.014
23 N -0.922 5.922
24 Si 0.913 3.087
25 H -0.281 1.281
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.144 3.856
29 C -0.105 4.105
30 H 0.070 0.930
31 C -0.106 4.106
32 H 0.067 0.933
33 H 0.057 0.943
34 H 0.058 0.942
35 H 0.114 0.886
36 H 0.056 0.944
37 H 0.067 0.933
38 H 0.058 0.942
39 H 0.226 0.774
40 H 0.397 0.603
41 H 0.060 0.940
42 H 0.062 0.938
43 H 0.063 0.937
44 H 0.066 0.934
45 H 0.104 0.896
46 H 0.013 0.987
47 H 0.251 0.749
48 H 0.025 0.975
49 H 0.023 0.977
50 H 0.065 0.935
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.454 19.184 11.888 25.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.046 4.046
3 C -0.200 4.200
4 C -0.084 4.084
5 N -0.061 5.061
6 O 0.038 5.962
7 C -0.091 4.091
8 C -0.259 4.259
9 C 0.380 3.620
10 O -0.403 6.403
11 N -0.368 5.368
12 C 0.047 3.953
13 H 0.106 0.894
14 C -0.163 4.163
15 C -0.137 4.137
16 C -0.134 4.134
17 H 0.087 0.913
18 C 0.040 3.960
19 N -0.336 5.336
20 C -0.347 4.347
21 H 0.095 0.905
22 C -0.209 4.209
23 N -0.571 5.571
24 Si 0.744 3.256
25 H -0.206 1.206
26 H -0.218 1.218
27 H -0.218 1.218
28 C 0.018 3.982
29 C -0.124 4.124
30 H 0.088 0.912
31 C -0.145 4.145
32 H 0.086 0.914
33 H 0.076 0.924
34 H 0.077 0.923
35 H 0.132 0.868
36 H 0.075 0.925
37 H 0.086 0.914
38 H 0.077 0.923
39 H 0.242 0.758
40 H 0.231 0.769
41 H 0.078 0.922
42 H 0.080 0.920
43 H 0.082 0.918
44 H 0.085 0.915
45 H 0.122 0.878
46 H 0.031 0.969
47 H 0.061 0.939
48 H 0.043 0.957
49 H 0.041 0.959
50 H 0.084 0.916
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -12.251 20.182 11.583 26.298
hybrid contribution 1.234 -1.455 -0.090 1.910
sum -11.017 18.727 11.493 24.580
Atomic orbital electron populations
1.21813 0.93382 1.02324 1.02480 1.19841 0.96282 0.95778 0.92728
1.21814 1.01349 0.94347 1.02483 1.24855 0.96230 0.93508 0.93805
1.73633 1.16782 1.13780 1.01907 1.84593 1.48264 1.29456 1.33916
1.26429 0.96261 0.94347 0.92060 1.22433 1.08004 1.01292 0.94122
1.16837 0.78312 0.79784 0.87075 1.90790 1.59043 1.69025 1.21402
1.46022 1.51639 1.28510 1.10615 1.21180 0.92900 0.92587 0.88631
0.89396 1.21902 0.97956 0.97123 0.99340 1.21255 0.97843 0.97467
0.97167 1.22402 0.93776 0.96393 1.00842 0.91290 1.21624 0.83772
0.99251 0.91382 1.45306 1.14420 1.16952 1.56895 1.19136 0.95157
0.95655 1.24798 0.90531 1.24774 0.97475 0.98684 0.99978 1.69821
1.20861 1.29721 1.36720 0.86020 0.80210 0.82004 0.77405 1.20591
1.21812 1.21818 1.21068 0.94016 0.88020 0.95052 1.21713 0.97079
0.96395 0.97228 0.91164 1.21548 0.95076 0.98830 0.99011 0.91422
0.92433 0.92282 0.86826 0.92451 0.91425 0.92279 0.75798 0.76915
0.92154 0.91966 0.91799 0.91537 0.87790 0.96890 0.93854 0.95686
0.95885 0.91605 0.91228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16
2 C -0.03 -0.26 3.33 -91.77 -0.31 -0.57 16
3 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16
4 C 0.08 0.83 6.09 -79.76 -0.49 0.34 16
5 N -0.36 -3.69 12.01 34.78 0.42 -3.27 16
6 O 0.10 0.82 11.06 18.66 0.21 1.03 16
7 C -0.01 -0.05 11.85 30.41 0.36 0.31 16
8 C -0.25 -2.39 6.47 -102.89 -0.67 -3.06 16
9 C 0.59 6.69 7.75 -12.54 -0.10 6.60 16
10 O -0.53 -7.72 14.90 5.27 0.08 -7.65 16
11 N -0.72 -6.68 5.04 -54.70 -0.28 -6.96 16
12 C 0.15 1.76 2.43 -67.73 -0.16 1.59 16
13 H 0.09 1.19 7.55 -51.93 -0.39 0.80 16
14 C -0.12 -1.57 5.35 -26.56 -0.14 -1.71 16
15 C -0.10 -1.47 5.71 -27.01 -0.15 -1.63 16
16 C -0.11 -2.03 2.50 -89.90 -0.23 -2.26 16
17 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16
18 C 0.16 3.87 5.53 -2.82 -0.02 3.86 16
19 N -0.61 -15.38 3.46 -169.87 -0.59 -15.97 16
20 C -0.22 -6.07 10.30 -15.06 -0.16 -6.22 16
21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16
22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16
23 N -0.92 -26.77 10.11 55.49 0.56 -26.21 16
24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16
25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
28 C 0.14 2.88 7.04 -3.06 -0.02 2.86 16
29 C -0.10 -1.70 2.28 -90.36 -0.21 -1.91 16
30 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16
31 C -0.11 -1.27 5.16 -27.08 -0.14 -1.41 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.11 1.27 6.29 -51.93 -0.33 0.94 16
36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.23 0.30 7.68 -52.48 -0.40 -0.10 16
40 H 0.40 2.40 7.78 -40.82 -0.32 2.08 16
41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
43 H 0.06 0.98 7.98 -51.93 -0.41 0.56 16
44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
45 H 0.10 2.79 5.93 -51.93 -0.31 2.48 16
46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
49 H 0.02 0.45 8.08 -51.92 -0.42 0.03 16
50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
51 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16
LS Contribution 402.20 15.07 6.06 6.06
Total: -1.00 -32.97 402.20 -8.84 -41.81
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: -8.44 Total: -0.45 kcal
Atomic # 6 Polarization: -3.54 SS G_CDS: -1.83 Total: -5.38 kcal
Atomic # 7 Polarization: -52.52 SS G_CDS: 0.11 Total: -52.41 kcal
Atomic # 8 Polarization: -6.90 SS G_CDS: 0.28 Total: -6.62 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -32.97 -8.84 -41.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000979787467.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.350 kcal
(2) G-P(sol) polarization free energy of solvation -32.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds