Wall clock time and date at job start Wed Apr 1 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.50704 * 109.46915 * 119.99514 * 2 1 3 5 5 N 1.30010 * 127.33691 * 299.95973 * 4 2 1 6 6 O 1.20657 * 112.30328 * 180.02562 * 5 4 2 7 7 C 1.33491 * 113.15656 * 359.97438 * 6 5 4 8 8 C 1.37365 * 106.34389 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56843 * 179.73701 * 8 7 6 10 10 O 1.21613 * 119.99997 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00033 * 0.02999 * 9 8 7 12 12 C 1.46503 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.02704 * 35.00289 * 12 11 9 14 14 C 1.52525 * 109.04137 * 276.04167 * 12 11 9 15 15 C 1.53795 * 111.70928 * 185.31764 * 14 12 11 16 16 C 1.51623 * 106.96572 * 57.64701 * 15 14 12 17 17 H 1.08998 * 110.50045 * 55.16454 * 16 15 14 18 18 C 1.53057 * 116.68001 * 183.69999 * 16 15 14 19 19 N 1.48661 * 103.44275 * 155.89182 * 18 16 15 20 20 C 1.36936 * 125.77972 * 155.60198 * 19 18 16 21 21 H 1.08003 * 119.99876 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00258 * 0.02562 * 20 19 18 23 23 N 1.31611 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47210 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47113 * 119.99840 * 24 22 20 27 27 H 1.48498 * 109.47136 * 239.99992 * 24 22 20 28 28 C 1.48894 * 108.52272 * 335.22242 * 19 18 16 29 29 C 1.52329 * 105.53881 * 357.43680 * 28 19 18 30 30 H 1.08999 * 109.88352 * 271.57101 * 29 28 19 31 31 C 1.51439 * 117.45348 * 145.04278 * 29 28 19 32 32 H 1.09003 * 109.46748 * 60.00228 * 1 2 3 33 33 H 1.08996 * 109.47183 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47088 * 300.00786 * 1 2 3 35 35 H 1.08999 * 109.47542 * 239.99494 * 2 1 3 36 36 H 1.08999 * 109.46959 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46603 * 299.99853 * 3 2 1 38 38 H 1.08999 * 109.47263 * 59.99323 * 3 2 1 39 39 H 1.08004 * 126.83070 * 180.02562 * 7 6 5 40 40 H 0.97006 * 120.00238 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.03838 * 305.96905 * 14 12 11 42 42 H 1.09001 * 109.03316 * 64.82392 * 14 12 11 43 43 H 1.09003 * 110.00512 * 298.26670 * 15 14 12 44 44 H 1.09003 * 109.94510 * 176.99193 * 15 14 12 45 45 H 1.08999 * 110.63050 * 274.38074 * 18 16 15 46 46 H 1.09000 * 110.62506 * 37.40224 * 18 16 15 47 47 H 0.97004 * 120.00073 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.55871 * 238.32070 * 28 19 18 49 49 H 1.09008 * 110.10765 * 116.31107 * 28 19 18 50 50 H 1.09000 * 109.94157 * 61.34128 * 31 29 28 51 51 H 1.09002 * 109.94114 * 300.10799 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.8084 -0.3924 2.4712 6 8 2.3446 -1.1501 3.2420 7 6 3.0296 -2.1207 2.6331 8 6 2.8806 -1.9110 1.2838 9 6 3.4382 -2.6924 0.1653 10 8 3.2049 -2.3636 -0.9820 11 7 4.2065 -3.7714 0.4141 12 6 4.7603 -4.5485 -0.6975 13 1 5.0046 -3.8723 -1.5168 14 6 3.7137 -5.5503 -1.1743 15 6 4.2758 -6.4893 -2.2550 16 6 5.4805 -7.1857 -1.6529 17 1 5.2072 -7.6868 -0.7243 18 6 6.2694 -8.1164 -2.5771 19 7 7.6222 -8.1493 -1.9616 20 6 8.5417 -9.1541 -2.1028 21 1 9.5007 -9.0815 -1.6113 22 6 8.2414 -10.2661 -2.8775 23 7 7.0727 -10.3549 -3.4760 24 14 9.4956 -11.6371 -3.0693 25 1 10.7202 -11.2989 -2.3005 26 1 8.9235 -12.9071 -2.5544 27 1 9.8400 -11.7956 -4.5051 28 6 7.8135 -6.9011 -1.1728 29 6 6.5467 -6.0833 -1.3895 30 1 6.6576 -5.4554 -2.2735 31 6 6.0450 -5.2520 -0.2273 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9564 0.8899 39 1 3.5895 -2.9133 3.1071 40 1 4.3929 -4.0335 1.3293 41 1 3.3779 -6.1451 -0.3249 42 1 2.8626 -5.0070 -1.5849 43 1 4.5781 -5.9128 -3.1293 44 1 3.5228 -7.2255 -2.5361 45 1 5.8276 -9.1128 -2.5869 46 1 6.3163 -7.7062 -3.5859 47 1 6.8626 -11.1322 -4.0171 48 1 8.6826 -6.3504 -1.5324 49 1 7.9303 -7.1401 -0.1156 50 1 6.7944 -4.5108 0.0505 51 1 5.8255 -5.8969 0.6236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979787467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:21 Heat of formation + Delta-G solvation = 33.540205 kcal Electronic energy + Delta-G solvation = -30805.445320 eV Core-core repulsion = 26708.052952 eV Total energy + Delta-G solvation = -4097.392368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.27269 -40.26198 -38.85111 -36.64298 -35.67106 -33.87046 -32.84571 -32.01884 -31.78964 -30.58006 -28.77143 -27.49138 -26.42737 -25.41945 -24.46584 -23.96619 -22.07804 -21.35893 -20.73557 -20.19803 -19.79513 -19.44157 -18.49120 -18.02703 -16.88139 -16.71221 -16.19126 -15.18526 -15.11901 -15.06011 -14.92280 -14.41806 -14.30454 -14.14058 -13.80576 -13.62897 -13.59945 -13.32577 -12.55078 -12.51358 -12.32360 -12.12961 -12.09438 -11.92215 -11.71073 -11.65303 -11.62253 -11.36868 -11.15666 -10.96965 -10.84910 -10.69144 -10.54213 -10.28686 -10.27387 -10.12760 -10.03343 -9.92204 -9.89416 -9.61491 -9.32231 -9.06840 -8.65575 -6.82642 -5.63898 -3.04702 0.69139 1.46710 2.52695 2.93207 2.95180 3.39884 3.45279 3.47812 3.64995 3.86852 4.45177 4.48210 4.53744 4.70921 4.78686 4.78878 4.84801 4.85446 5.08160 5.14314 5.29877 5.30555 5.34455 5.40276 5.48851 5.49747 5.57650 5.60218 5.62710 5.64708 5.72451 5.75505 5.88085 6.00269 6.03858 6.11826 6.13210 6.21266 6.24734 6.36084 6.39714 6.54206 6.62035 6.66369 6.84555 7.02375 7.22394 7.55516 7.62074 7.84251 7.86876 7.93319 8.34145 9.21384 9.82194 10.49090 11.40607 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.001944 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.104010 B =14400.185592 C =14800.787671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.142 4.142 4 C 0.079 3.921 5 N -0.355 5.355 6 O 0.097 5.903 7 C -0.008 4.008 8 C -0.251 4.251 9 C 0.594 3.406 10 O -0.526 6.526 11 N -0.718 5.718 12 C 0.150 3.850 13 H 0.088 0.912 14 C -0.125 4.125 15 C -0.099 4.099 16 C -0.115 4.115 17 H 0.069 0.931 18 C 0.164 3.836 19 N -0.609 5.609 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.144 3.856 29 C -0.105 4.105 30 H 0.070 0.930 31 C -0.106 4.106 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.226 0.774 40 H 0.397 0.603 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.013 0.987 47 H 0.251 0.749 48 H 0.025 0.975 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 19.184 11.888 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.200 4.200 4 C -0.084 4.084 5 N -0.061 5.061 6 O 0.038 5.962 7 C -0.091 4.091 8 C -0.259 4.259 9 C 0.380 3.620 10 O -0.403 6.403 11 N -0.368 5.368 12 C 0.047 3.953 13 H 0.106 0.894 14 C -0.163 4.163 15 C -0.137 4.137 16 C -0.134 4.134 17 H 0.087 0.913 18 C 0.040 3.960 19 N -0.336 5.336 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.209 4.209 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.018 3.982 29 C -0.124 4.124 30 H 0.088 0.912 31 C -0.145 4.145 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.242 0.758 40 H 0.231 0.769 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.031 0.969 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.251 20.182 11.583 26.298 hybrid contribution 1.234 -1.455 -0.090 1.910 sum -11.017 18.727 11.493 24.580 Atomic orbital electron populations 1.21813 0.93382 1.02324 1.02480 1.19841 0.96282 0.95778 0.92728 1.21814 1.01349 0.94347 1.02483 1.24855 0.96230 0.93508 0.93805 1.73633 1.16782 1.13780 1.01907 1.84593 1.48264 1.29456 1.33916 1.26429 0.96261 0.94347 0.92060 1.22433 1.08004 1.01292 0.94122 1.16837 0.78312 0.79784 0.87075 1.90790 1.59043 1.69025 1.21402 1.46022 1.51639 1.28510 1.10615 1.21180 0.92900 0.92587 0.88631 0.89396 1.21902 0.97956 0.97123 0.99340 1.21255 0.97843 0.97467 0.97167 1.22402 0.93776 0.96393 1.00842 0.91290 1.21624 0.83772 0.99251 0.91382 1.45306 1.14420 1.16952 1.56895 1.19136 0.95157 0.95655 1.24798 0.90531 1.24774 0.97475 0.98684 0.99978 1.69821 1.20861 1.29721 1.36720 0.86020 0.80210 0.82004 0.77405 1.20591 1.21812 1.21818 1.21068 0.94016 0.88020 0.95052 1.21713 0.97079 0.96395 0.97228 0.91164 1.21548 0.95076 0.98830 0.99011 0.91422 0.92433 0.92282 0.86826 0.92451 0.91425 0.92279 0.75798 0.76915 0.92154 0.91966 0.91799 0.91537 0.87790 0.96890 0.93854 0.95686 0.95885 0.91605 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.03 -0.26 3.33 -91.77 -0.31 -0.57 16 3 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 4 C 0.08 0.83 6.09 -79.76 -0.49 0.34 16 5 N -0.36 -3.69 12.01 34.78 0.42 -3.27 16 6 O 0.10 0.82 11.06 18.66 0.21 1.03 16 7 C -0.01 -0.05 11.85 30.41 0.36 0.31 16 8 C -0.25 -2.39 6.47 -102.89 -0.67 -3.06 16 9 C 0.59 6.69 7.75 -12.54 -0.10 6.60 16 10 O -0.53 -7.72 14.90 5.27 0.08 -7.65 16 11 N -0.72 -6.68 5.04 -54.70 -0.28 -6.96 16 12 C 0.15 1.76 2.43 -67.73 -0.16 1.59 16 13 H 0.09 1.19 7.55 -51.93 -0.39 0.80 16 14 C -0.12 -1.57 5.35 -26.56 -0.14 -1.71 16 15 C -0.10 -1.47 5.71 -27.01 -0.15 -1.63 16 16 C -0.11 -2.03 2.50 -89.90 -0.23 -2.26 16 17 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 18 C 0.16 3.87 5.53 -2.82 -0.02 3.86 16 19 N -0.61 -15.38 3.46 -169.87 -0.59 -15.97 16 20 C -0.22 -6.07 10.30 -15.06 -0.16 -6.22 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 23 N -0.92 -26.77 10.11 55.49 0.56 -26.21 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.14 2.88 7.04 -3.06 -0.02 2.86 16 29 C -0.10 -1.70 2.28 -90.36 -0.21 -1.91 16 30 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 31 C -0.11 -1.27 5.16 -27.08 -0.14 -1.41 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 1.27 6.29 -51.93 -0.33 0.94 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.23 0.30 7.68 -52.48 -0.40 -0.10 16 40 H 0.40 2.40 7.78 -40.82 -0.32 2.08 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.98 7.98 -51.93 -0.41 0.56 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.10 2.79 5.93 -51.93 -0.31 2.48 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.02 0.45 8.08 -51.92 -0.42 0.03 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -32.97 402.20 -8.84 -41.81 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.44 Total: -0.45 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.83 Total: -5.38 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.11 Total: -52.41 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.28 Total: -6.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.97 -8.84 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979787467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.350 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds