Wall clock time and date at job start Wed Apr 1 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.50704 * 109.46915 * 119.99514 * 2 1 3 5 5 N 1.30010 * 127.33691 * 299.95973 * 4 2 1 6 6 O 1.20657 * 112.30328 * 180.02562 * 5 4 2 7 7 C 1.33491 * 113.15656 * 359.97438 * 6 5 4 8 8 C 1.37365 * 106.34389 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56843 * 179.73701 * 8 7 6 10 10 O 1.21613 * 119.99997 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00033 * 0.02999 * 9 8 7 12 12 C 1.46503 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.02704 * 35.00289 * 12 11 9 14 14 C 1.52525 * 109.04137 * 276.04167 * 12 11 9 15 15 C 1.53795 * 111.70928 * 185.31764 * 14 12 11 16 16 C 1.51623 * 106.96572 * 57.64701 * 15 14 12 17 17 H 1.08998 * 110.50045 * 55.16454 * 16 15 14 18 18 C 1.53057 * 116.68001 * 183.69999 * 16 15 14 19 19 N 1.48661 * 103.44275 * 155.89182 * 18 16 15 20 20 C 1.36936 * 125.77972 * 155.60198 * 19 18 16 21 21 H 1.08003 * 119.99876 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00258 * 0.02562 * 20 19 18 23 23 N 1.31611 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47210 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47113 * 119.99840 * 24 22 20 27 27 H 1.48498 * 109.47136 * 239.99992 * 24 22 20 28 28 C 1.48894 * 108.52272 * 335.22242 * 19 18 16 29 29 C 1.52329 * 105.53881 * 357.43680 * 28 19 18 30 30 H 1.08999 * 109.88352 * 271.57101 * 29 28 19 31 31 C 1.51439 * 117.45348 * 145.04278 * 29 28 19 32 32 H 1.09003 * 109.46748 * 60.00228 * 1 2 3 33 33 H 1.08996 * 109.47183 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47088 * 300.00786 * 1 2 3 35 35 H 1.08999 * 109.47542 * 239.99494 * 2 1 3 36 36 H 1.08999 * 109.46959 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46603 * 299.99853 * 3 2 1 38 38 H 1.08999 * 109.47263 * 59.99323 * 3 2 1 39 39 H 1.08004 * 126.83070 * 180.02562 * 7 6 5 40 40 H 0.97006 * 120.00238 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.03838 * 305.96905 * 14 12 11 42 42 H 1.09001 * 109.03316 * 64.82392 * 14 12 11 43 43 H 1.09003 * 110.00512 * 298.26670 * 15 14 12 44 44 H 1.09003 * 109.94510 * 176.99193 * 15 14 12 45 45 H 1.08999 * 110.63050 * 274.38074 * 18 16 15 46 46 H 1.09000 * 110.62506 * 37.40224 * 18 16 15 47 47 H 0.97004 * 120.00073 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.55871 * 238.32070 * 28 19 18 49 49 H 1.09008 * 110.10765 * 116.31107 * 28 19 18 50 50 H 1.09000 * 109.94157 * 61.34128 * 31 29 28 51 51 H 1.09002 * 109.94114 * 300.10799 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.8084 -0.3924 2.4712 6 8 2.3446 -1.1501 3.2420 7 6 3.0296 -2.1207 2.6331 8 6 2.8806 -1.9110 1.2838 9 6 3.4382 -2.6924 0.1653 10 8 3.2049 -2.3636 -0.9820 11 7 4.2065 -3.7714 0.4141 12 6 4.7603 -4.5485 -0.6975 13 1 5.0046 -3.8723 -1.5168 14 6 3.7137 -5.5503 -1.1743 15 6 4.2758 -6.4893 -2.2550 16 6 5.4805 -7.1857 -1.6529 17 1 5.2072 -7.6868 -0.7243 18 6 6.2694 -8.1164 -2.5771 19 7 7.6222 -8.1493 -1.9616 20 6 8.5417 -9.1541 -2.1028 21 1 9.5007 -9.0815 -1.6113 22 6 8.2414 -10.2661 -2.8775 23 7 7.0727 -10.3549 -3.4760 24 14 9.4956 -11.6371 -3.0693 25 1 10.7202 -11.2989 -2.3005 26 1 8.9235 -12.9071 -2.5544 27 1 9.8400 -11.7956 -4.5051 28 6 7.8135 -6.9011 -1.1728 29 6 6.5467 -6.0833 -1.3895 30 1 6.6576 -5.4554 -2.2735 31 6 6.0450 -5.2520 -0.2273 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9564 0.8899 39 1 3.5895 -2.9133 3.1071 40 1 4.3929 -4.0335 1.3293 41 1 3.3779 -6.1451 -0.3249 42 1 2.8626 -5.0070 -1.5849 43 1 4.5781 -5.9128 -3.1293 44 1 3.5228 -7.2255 -2.5361 45 1 5.8276 -9.1128 -2.5869 46 1 6.3163 -7.7062 -3.5859 47 1 6.8626 -11.1322 -4.0171 48 1 8.6826 -6.3504 -1.5324 49 1 7.9303 -7.1401 -0.1156 50 1 6.7944 -4.5108 0.0505 51 1 5.8255 -5.8969 0.6236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979787467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:20 Heat of formation + Delta-G solvation = 13.281525 kcal Electronic energy + Delta-G solvation = -30806.323802 eV Core-core repulsion = 26708.052952 eV Total energy + Delta-G solvation = -4098.270850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.95038 -41.30586 -40.06731 -37.43037 -36.92744 -35.13732 -33.91490 -33.27085 -32.67141 -31.89969 -30.33651 -28.14582 -27.86496 -26.95331 -25.55448 -24.62213 -23.55020 -22.33269 -21.71332 -21.41973 -20.95959 -20.65996 -19.26391 -18.74931 -18.70464 -17.60818 -17.09754 -16.86012 -16.11911 -15.94548 -15.78948 -15.74510 -15.58330 -15.29632 -14.98858 -14.83795 -14.29422 -14.27938 -14.08347 -13.61143 -13.50406 -13.44312 -13.18067 -13.14112 -12.90854 -12.78367 -12.76302 -12.60411 -12.33353 -12.32495 -12.11411 -11.89935 -11.89313 -11.73305 -11.69354 -11.46110 -11.23668 -10.99878 -10.95788 -10.80899 -10.76656 -10.68757 -10.06074 -8.86022 -7.74656 -5.18073 0.10208 0.75667 1.47064 1.47903 1.58134 1.85554 2.15477 2.29309 2.50864 2.98179 3.24581 3.35354 3.59233 3.65459 3.70708 3.79263 3.89044 4.03965 4.10898 4.11394 4.13252 4.18534 4.38177 4.47497 4.49644 4.57307 4.60360 4.68232 4.71466 4.73803 4.75010 4.81414 4.83787 4.89824 4.98884 5.03632 5.06608 5.09715 5.15508 5.21919 5.23314 5.28609 5.34378 5.40321 5.47910 5.50694 5.59292 5.77159 5.86437 6.31582 6.50443 7.11591 7.16432 7.23728 7.78561 8.45331 9.27795 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.001944 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.104010 B =14400.185592 C =14800.787671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.137 4.137 4 C 0.062 3.938 5 N -0.374 5.374 6 O 0.097 5.903 7 C 0.032 3.968 8 C -0.282 4.282 9 C 0.597 3.403 10 O -0.568 6.568 11 N -0.700 5.700 12 C 0.159 3.841 13 H 0.069 0.931 14 C -0.114 4.114 15 C -0.094 4.094 16 C -0.101 4.101 17 H 0.074 0.926 18 C 0.166 3.834 19 N -0.634 5.634 20 C -0.232 4.232 21 H 0.081 0.919 22 C -0.073 4.073 23 N -0.950 5.950 24 Si 0.978 3.022 25 H -0.266 1.266 26 H -0.291 1.291 27 H -0.296 1.296 28 C 0.138 3.862 29 C -0.091 4.091 30 H 0.061 0.939 31 C -0.092 4.092 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.279 0.721 40 H 0.417 0.583 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.068 0.932 46 H -0.019 1.019 47 H 0.245 0.755 48 H 0.025 0.975 49 H 0.038 0.962 50 H 0.087 0.913 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 20.010 14.823 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.101 4.101 5 N -0.080 5.080 6 O 0.039 5.961 7 C -0.050 4.050 8 C -0.290 4.290 9 C 0.384 3.616 10 O -0.448 6.448 11 N -0.352 5.352 12 C 0.055 3.945 13 H 0.087 0.913 14 C -0.153 4.153 15 C -0.133 4.133 16 C -0.120 4.120 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.361 5.361 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.265 4.265 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.190 1.190 26 H -0.218 1.218 27 H -0.223 1.223 28 C 0.014 3.986 29 C -0.110 4.110 30 H 0.080 0.920 31 C -0.131 4.131 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.294 0.706 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.086 0.914 46 H -0.001 1.001 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.056 0.944 50 H 0.106 0.894 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.969 21.033 14.583 28.255 hybrid contribution 1.190 -1.720 -0.999 2.318 sum -10.779 19.314 13.585 25.957 Atomic orbital electron populations 1.21771 0.92621 1.01967 1.03096 1.19830 0.96963 0.96194 0.92038 1.21771 1.00802 0.93767 1.03097 1.25062 0.96738 0.94221 0.94045 1.73639 1.17757 1.14761 1.01884 1.84569 1.48167 1.29697 1.33678 1.27312 0.93575 0.93397 0.90705 1.22283 1.09823 1.01833 0.95054 1.17026 0.77875 0.79828 0.86888 1.90779 1.60622 1.70168 1.23230 1.45711 1.50825 1.27570 1.11071 1.20880 0.92566 0.92071 0.88993 0.91270 1.21782 0.97857 0.96789 0.98847 1.21194 0.96665 0.97669 0.97751 1.22160 0.94730 0.95731 0.99407 0.90784 1.21376 0.84431 0.98597 0.91399 1.45676 1.14640 1.18351 1.57437 1.19519 0.95824 0.96434 1.24386 0.90112 1.25625 0.99398 1.01153 1.00315 1.70088 1.22526 1.30033 1.37441 0.85001 0.78464 0.78902 0.76936 1.19007 1.21824 1.22292 1.21269 0.95865 0.86576 0.94866 1.21598 0.94542 0.95807 0.99103 0.92038 1.21443 0.95337 0.98839 0.97442 0.90131 0.93238 0.92276 0.88729 0.93201 0.90135 0.92275 0.70571 0.74487 0.90513 0.92490 0.92690 0.91690 0.91427 1.00073 0.94533 0.95731 0.94413 0.89407 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.18 71.98 0.66 -1.58 16 2 C -0.03 -0.60 3.33 -11.54 -0.04 -0.63 16 3 C -0.14 -2.22 9.18 71.98 0.66 -1.56 16 4 C 0.06 1.23 6.09 45.16 0.28 1.51 16 5 N -0.37 -7.18 12.01 -44.78 -0.54 -7.71 16 6 O 0.10 1.36 11.06 77.01 0.85 2.21 16 7 C 0.03 0.27 11.85 67.61 0.80 1.07 16 8 C -0.28 -4.72 6.47 -18.74 -0.12 -4.84 16 9 C 0.60 12.25 7.75 86.65 0.67 12.92 16 10 O -0.57 -16.50 14.90 -4.07 -0.06 -16.56 16 11 N -0.70 -10.53 5.04 -445.23 -2.24 -12.77 16 12 C 0.16 3.29 2.43 45.12 0.11 3.40 16 13 H 0.07 1.76 7.55 -2.39 -0.02 1.74 16 14 C -0.11 -2.64 5.35 30.70 0.16 -2.47 16 15 C -0.09 -2.77 5.71 30.41 0.17 -2.60 16 16 C -0.10 -3.53 2.50 -10.32 -0.03 -3.55 16 17 H 0.07 2.54 8.01 -2.39 -0.02 2.52 16 18 C 0.17 8.16 5.53 85.98 0.48 8.64 16 19 N -0.63 -32.48 3.46 -691.33 -2.40 -34.88 16 20 C -0.23 -13.03 10.30 84.03 0.87 -12.16 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 22 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 23 N -0.95 -57.22 10.11 21.65 0.22 -57.00 16 24 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 C 0.14 5.39 7.04 85.69 0.60 5.99 16 29 C -0.09 -2.81 2.28 -10.62 -0.02 -2.84 16 30 H 0.06 2.02 7.92 -2.39 -0.02 2.00 16 31 C -0.09 -1.87 5.16 30.37 0.16 -1.71 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 2.19 6.29 -2.39 -0.02 2.17 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.28 -1.09 7.68 -2.91 -0.02 -1.12 16 40 H 0.42 2.81 7.78 -92.70 -0.72 2.09 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 3.81 5.93 -2.39 -0.01 3.80 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.04 1.38 8.08 -2.38 -0.02 1.36 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.09 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -76.46 402.20 3.94 -72.52 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.21 Total: 10.43 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.87 Total: -4.12 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -4.96 Total: -112.37 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.79 Total: -14.35 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.46 3.94 -72.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979787467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.806 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds