Wall clock time and date at job start Wed Apr 1 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46817 * 2 1 4 4 C 1.50701 * 109.47015 * 119.99768 * 2 1 3 5 5 C 1.35318 * 126.66408 * 120.28840 * 4 2 1 6 6 C 1.42272 * 103.92120 * 180.13103 * 5 4 2 7 7 C 1.48328 * 126.93702 * 179.91000 * 6 5 4 8 8 O 1.21498 * 120.00068 * 359.71118 * 7 6 5 9 9 N 1.34776 * 120.00095 * 179.70494 * 7 6 5 10 10 C 1.46503 * 120.00455 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.72629 * 35.66022 * 10 9 7 12 12 C 1.53326 * 109.73913 * 275.00748 * 10 9 7 13 13 C 1.52593 * 108.43836 * 176.15649 * 12 10 9 14 14 C 1.51893 * 111.25819 * 61.89219 * 13 12 10 15 15 H 1.08997 * 111.46102 * 74.20154 * 14 13 12 16 16 C 1.55348 * 107.00879 * 197.41912 * 14 13 12 17 17 N 1.47176 * 106.96331 * 92.57226 * 16 14 13 18 18 C 1.36934 * 125.64906 * 180.99736 * 17 16 14 19 19 H 1.07997 * 120.00422 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00194 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00373 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47108 * 59.99749 * 22 20 18 24 24 H 1.48502 * 109.47250 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46877 * 300.00002 * 22 20 18 26 26 C 1.47280 * 108.39444 * 0.36694 * 17 16 14 27 27 C 1.53900 * 104.31896 * 24.33684 * 26 17 16 28 28 H 1.08994 * 109.20740 * 76.13389 * 27 26 17 29 29 C 1.50742 * 113.02723 * 197.98388 * 27 26 17 30 30 N 1.30985 * 106.12315 * 359.64762 * 6 5 4 31 31 O 1.20907 * 111.43806 * 0.22418 * 30 6 5 32 32 H 1.08994 * 109.47297 * 60.00052 * 1 2 3 33 33 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47486 * 299.99768 * 1 2 3 35 35 H 1.08998 * 109.47180 * 239.99598 * 2 1 3 36 36 H 1.09006 * 109.46681 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47144 * 300.00041 * 3 2 1 38 38 H 1.09000 * 109.47253 * 60.00539 * 3 2 1 39 39 H 1.07997 * 128.04017 * 0.02562 * 5 4 2 40 40 H 0.97000 * 120.00123 * 0.02562 * 9 7 6 41 41 H 1.09002 * 109.67640 * 295.90532 * 12 10 9 42 42 H 1.08995 * 109.67908 * 56.41012 * 12 10 9 43 43 H 1.08999 * 109.16157 * 182.77079 * 13 12 10 44 44 H 1.08994 * 109.16098 * 301.96415 * 13 12 10 45 45 H 1.08997 * 109.96333 * 211.95042 * 16 14 13 46 46 H 1.09004 * 109.96038 * 333.19994 * 16 14 13 47 47 H 0.96998 * 120.00333 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.84975 * 265.37886 * 26 17 16 49 49 H 1.09001 * 109.93041 * 142.83711 * 26 17 16 50 50 H 1.09002 * 109.02149 * 304.54382 * 29 27 26 51 51 H 1.09002 * 108.96601 * 185.67205 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8178 -1.8117 1.2636 6 6 2.9910 -2.0670 2.6525 7 6 3.7713 -3.1694 3.2657 8 8 4.3423 -3.9758 2.5587 9 7 3.8469 -3.2766 4.6070 10 6 4.6170 -4.3657 5.2127 11 1 5.4979 -4.5753 4.6058 12 6 3.7455 -5.6233 5.3120 13 6 4.6025 -6.7627 5.8561 14 6 5.1149 -6.4487 7.2511 15 1 4.3238 -6.5369 7.9957 16 6 6.2986 -7.4156 7.5287 17 7 7.5284 -6.7166 7.1222 18 6 8.7963 -7.2300 7.1855 19 1 9.6368 -6.6346 6.8612 20 6 9.0012 -8.5159 7.6666 21 7 7.9767 -9.2419 8.0614 22 14 10.7308 -9.2161 7.7537 23 1 11.5655 -8.3646 8.6388 24 1 10.6792 -10.5965 8.2987 25 1 11.3226 -9.2439 6.3920 26 6 7.1604 -5.3807 6.6233 27 6 5.8140 -5.0775 7.3044 28 1 5.9917 -4.8057 8.3448 29 6 5.0455 -3.9724 6.6259 30 7 2.3271 -1.1285 3.2804 31 8 1.7919 -0.3712 2.5045 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.2185 -2.3687 0.4296 40 1 3.3907 -2.6330 5.1715 41 1 2.9096 -5.4383 5.9866 42 1 3.3683 -5.8874 4.3241 43 1 4.0075 -7.6755 5.8851 44 1 5.4567 -6.9143 5.1964 45 1 6.3412 -7.6563 8.5909 46 1 6.1787 -8.3279 6.9444 47 1 8.1199 -10.1403 8.3979 48 1 7.0466 -5.3892 5.5392 49 1 7.9129 -4.6516 6.9235 50 1 5.6743 -3.0836 6.5721 51 1 4.1578 -3.7442 7.2159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980144345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:16 Heat of formation + Delta-G solvation = 11.910274 kcal Electronic energy + Delta-G solvation = -30644.288895 eV Core-core repulsion = 26545.958583 eV Total energy + Delta-G solvation = -4098.330312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.19894 -41.50149 -40.26697 -37.16017 -36.98969 -35.30013 -34.88378 -33.35629 -32.35698 -31.70334 -30.62850 -28.00077 -27.84205 -27.03537 -25.75281 -24.21284 -23.67249 -23.42140 -22.57772 -21.67966 -21.10506 -19.57558 -18.87470 -18.86466 -18.36469 -17.85732 -17.59817 -16.79600 -16.41390 -16.09439 -15.99179 -15.64771 -15.35309 -15.11358 -14.98297 -14.95255 -14.50674 -14.11550 -14.10223 -14.07206 -13.73905 -13.30081 -13.20481 -12.99655 -12.93228 -12.86641 -12.71249 -12.53854 -12.35578 -12.26560 -12.20242 -12.15202 -11.81919 -11.79330 -11.78678 -11.63747 -11.60366 -11.24182 -11.08654 -10.94716 -10.69393 -10.49843 -10.20025 -8.87802 -7.85220 -5.20347 -0.01938 0.61525 1.42850 1.46690 1.52856 1.71194 1.97145 1.97570 2.48446 2.80838 3.31612 3.35714 3.59605 3.64251 3.73585 3.82791 3.93765 3.99372 4.08535 4.09938 4.16275 4.16977 4.30451 4.33207 4.46241 4.51829 4.56758 4.57889 4.69350 4.73516 4.84482 4.85206 4.88940 4.96992 4.99165 5.00092 5.05718 5.08680 5.17078 5.19034 5.27856 5.34914 5.40220 5.41098 5.41625 5.46759 5.51570 5.73716 5.80189 6.19628 6.25039 6.87329 6.98274 7.10217 7.77985 8.43758 9.24692 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.001899 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.235202 B =14739.071231 C =15039.843373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.151 4.151 4 C -0.007 4.007 5 C -0.197 4.197 6 C -0.042 4.042 7 C 0.595 3.405 8 O -0.557 6.557 9 N -0.694 5.694 10 C 0.149 3.851 11 H 0.066 0.934 12 C -0.112 4.112 13 C -0.096 4.096 14 C -0.097 4.097 15 H 0.099 0.901 16 C 0.190 3.810 17 N -0.627 5.627 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.134 3.866 27 C -0.076 4.076 28 H 0.078 0.922 29 C -0.097 4.097 30 N -0.341 5.341 31 O 0.129 5.871 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.189 0.811 40 H 0.416 0.584 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.004 0.996 46 H 0.009 0.991 47 H 0.246 0.754 48 H 0.015 0.985 49 H 0.038 0.962 50 H 0.080 0.920 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.447 23.532 -14.653 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.208 4.208 4 C -0.070 4.070 5 C -0.220 4.220 6 C -0.200 4.200 7 C 0.380 3.620 8 O -0.434 6.434 9 N -0.345 5.345 10 C 0.045 3.955 11 H 0.084 0.916 12 C -0.151 4.151 13 C -0.134 4.134 14 C -0.116 4.116 15 H 0.117 0.883 16 C 0.065 3.935 17 N -0.353 5.353 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.008 3.992 27 C -0.096 4.096 28 H 0.097 0.903 29 C -0.135 4.135 30 N -0.041 5.041 31 O 0.052 5.948 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.206 0.794 40 H 0.254 0.746 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.022 0.978 46 H 0.027 0.973 47 H 0.056 0.944 48 H 0.033 0.967 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.063 22.989 -13.726 32.868 hybrid contribution 1.454 -1.340 -0.206 1.988 sum -17.609 21.650 -13.932 31.191 Atomic orbital electron populations 1.21919 0.92119 1.02812 1.03967 1.20086 0.97452 0.96504 0.88973 1.21922 1.01428 0.93527 1.03971 1.25073 0.98382 0.96290 0.87231 1.22675 1.03530 0.99689 0.96057 1.23414 1.03918 0.98629 0.94052 1.17154 0.79510 0.82651 0.82730 1.90817 1.46950 1.43116 1.62549 1.45810 1.52093 1.31074 1.05483 1.20996 0.93776 0.86002 0.94770 0.91592 1.21785 0.98387 0.93941 1.00942 1.21109 0.98435 0.98204 0.95652 1.22160 0.96926 0.95109 0.97452 0.88311 1.21243 0.83878 0.92368 0.96007 1.44749 1.02880 1.13398 1.74250 1.19415 0.84456 0.97549 1.35877 0.90346 1.25657 1.01413 0.97268 1.01721 1.70182 1.29974 1.10153 1.49631 0.85150 0.79286 0.77041 0.77849 1.20122 1.21865 1.20596 1.21585 0.95344 0.86641 0.95580 1.21264 0.94221 0.94099 1.00017 0.90324 1.21057 1.01378 0.97829 0.93220 1.74159 1.09778 1.02670 1.17478 1.84719 1.53706 1.41971 1.14381 0.89190 0.92492 0.92043 0.85865 0.92547 0.89178 0.92044 0.79375 0.74649 0.89266 0.92882 0.91736 0.94885 0.97759 0.97325 0.94437 0.96750 0.94391 0.90131 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.17 71.98 0.66 -0.05 16 2 C -0.01 -0.07 3.34 -11.54 -0.04 -0.11 16 3 C -0.15 -0.73 9.18 71.98 0.66 -0.07 16 4 C -0.01 -0.09 5.98 25.01 0.15 0.06 16 5 C -0.20 -3.59 10.91 22.60 0.25 -3.34 16 6 C -0.04 -0.98 7.19 42.96 0.31 -0.67 16 7 C 0.59 16.67 7.82 86.93 0.68 17.35 16 8 O -0.56 -19.84 16.63 -3.71 -0.06 -19.90 16 9 N -0.69 -16.52 5.10 -444.70 -2.27 -18.79 16 10 C 0.15 4.07 2.29 45.04 0.10 4.17 16 11 H 0.07 2.28 6.27 -2.38 -0.01 2.27 16 12 C -0.11 -3.13 5.52 30.57 0.17 -2.96 16 13 C -0.10 -3.32 4.64 30.09 0.14 -3.18 16 14 C -0.10 -3.55 3.49 -10.01 -0.03 -3.58 16 15 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 16 C 0.19 9.67 4.67 87.06 0.41 10.07 16 17 N -0.63 -33.61 3.39 -691.91 -2.35 -35.96 16 18 C -0.24 -14.32 10.29 84.03 0.86 -13.46 16 19 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 21 N -0.95 -59.09 10.32 21.65 0.22 -58.87 16 22 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.13 5.69 6.15 86.53 0.53 6.22 16 27 C -0.08 -2.52 2.86 -10.89 -0.03 -2.55 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 C -0.10 -2.33 4.86 29.80 0.14 -2.19 16 30 N -0.34 -7.13 11.84 -49.52 -0.59 -7.72 16 31 O 0.13 2.20 11.18 71.92 0.80 3.01 16 32 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.12 0.39 8.12 -2.39 -0.02 0.37 16 36 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.42 7.79 8.36 -92.71 -0.78 7.02 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.03 1.37 7.14 -2.39 -0.02 1.36 16 45 H 0.00 0.24 7.51 -2.39 -0.02 0.22 16 46 H 0.01 0.49 7.00 -2.38 -0.02 0.48 16 47 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.01 0.65 6.15 -2.39 -0.01 0.63 16 49 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.08 401.93 3.37 -72.71 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.16 Total: 13.80 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.43 Total: 2.17 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -4.98 Total: -121.33 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.74 Total: -16.89 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -76.08 3.37 -72.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980144345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.621 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds