Wall clock time and date at job start Wed Apr 1 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46809 * 2 1 4 4 C 1.50699 * 109.46848 * 119.99575 * 2 1 3 5 5 C 1.35312 * 126.66583 * 120.00184 * 4 2 1 6 6 C 1.42264 * 103.92453 * 179.97438 * 5 4 2 7 7 C 1.48330 * 126.93986 * 179.74341 * 6 5 4 8 8 O 1.21496 * 119.99941 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00093 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00097 * 179.97438 * 9 7 6 11 11 H 1.09009 * 109.02644 * 33.95661 * 10 9 7 12 12 C 1.52519 * 109.04355 * 275.00349 * 10 9 7 13 13 C 1.53818 * 111.70373 * 185.39568 * 12 10 9 14 14 C 1.51620 * 107.01675 * 57.53640 * 13 12 10 15 15 H 1.08988 * 110.50603 * 56.32243 * 14 13 12 16 16 C 1.53059 * 116.67686 * 183.73324 * 14 13 12 17 17 N 1.48666 * 103.44441 * 155.88600 * 16 14 13 18 18 C 1.36933 * 125.77989 * 155.58414 * 17 16 14 19 19 H 1.07996 * 120.00866 * 355.56332 * 18 17 16 20 20 C 1.38815 * 119.99740 * 175.56711 * 18 17 16 21 21 N 1.31622 * 119.99770 * 7.31887 * 20 18 17 22 22 Si 1.86796 * 120.00050 * 187.32232 * 20 18 17 23 23 H 1.48504 * 109.47412 * 94.98574 * 22 20 18 24 24 H 1.48507 * 109.46953 * 214.98223 * 22 20 18 25 25 H 1.48493 * 109.47264 * 334.98220 * 22 20 18 26 26 C 1.48240 * 108.43183 * 335.62212 * 17 16 14 27 27 C 1.52334 * 105.86456 * 356.81481 * 26 17 16 28 28 H 1.09005 * 109.88666 * 272.32357 * 27 26 17 29 29 C 1.51442 * 117.44321 * 145.30799 * 27 26 17 30 30 N 1.30988 * 106.12558 * 359.97438 * 6 5 4 31 31 O 1.20908 * 111.43522 * 0.02562 * 30 6 5 32 32 H 1.08990 * 109.47536 * 300.00096 * 1 2 3 33 33 H 1.08998 * 109.46639 * 60.00561 * 1 2 3 34 34 H 1.09001 * 109.46854 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47065 * 239.99667 * 2 1 3 36 36 H 1.08999 * 109.46993 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.46603 * 299.99452 * 3 2 1 38 38 H 1.08990 * 109.47150 * 59.99667 * 3 2 1 39 39 H 1.08001 * 128.03731 * 0.02562 * 5 4 2 40 40 H 0.96996 * 120.00009 * 0.02562 * 9 7 6 41 41 H 1.09001 * 109.03622 * 305.96960 * 12 10 9 42 42 H 1.09002 * 109.04083 * 64.89864 * 12 10 9 43 43 H 1.09001 * 109.94436 * 176.91338 * 13 12 10 44 44 H 1.09002 * 109.94256 * 298.15551 * 13 12 10 45 45 H 1.08998 * 110.62993 * 274.37374 * 16 14 13 46 46 H 1.08997 * 110.63107 * 37.39931 * 16 14 13 47 47 H 0.97002 * 119.99775 * 180.02562 * 21 20 18 48 48 H 1.08995 * 110.17331 * 115.91753 * 26 17 16 49 49 H 1.09004 * 110.16999 * 237.64514 * 26 17 16 50 50 H 1.08995 * 109.94485 * 61.85678 * 29 27 26 51 51 H 1.09001 * 109.94148 * 300.61637 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8133 -1.8148 1.2637 6 6 2.9918 -2.0662 2.6526 7 6 3.7675 -3.1719 3.2658 8 8 4.3332 -3.9820 2.5589 9 7 3.8446 -3.2778 4.6073 10 6 4.6102 -4.3702 5.2130 11 1 5.4690 -4.5956 4.5805 12 6 3.7231 -5.6073 5.3069 13 6 4.4233 -6.7538 6.0559 14 6 4.7939 -6.2263 7.4282 15 1 3.9102 -5.8522 7.9449 16 6 5.5882 -7.1691 8.3354 17 7 6.2894 -6.2449 9.2652 18 6 6.7368 -6.5595 10.5205 19 1 6.5271 -7.5319 10.9408 20 6 7.4599 -5.6281 11.2531 21 7 7.5927 -4.3978 10.8049 22 14 8.2446 -6.1211 12.8750 23 1 9.6587 -6.5104 12.6428 24 1 8.1953 -4.9745 13.8175 25 1 7.5036 -7.2702 13.4544 26 6 6.4213 -4.9251 8.6032 27 6 5.8459 -5.1017 7.2038 28 1 6.6236 -5.4512 6.5246 29 6 5.1116 -3.9243 6.5974 30 7 2.3288 -1.1271 3.2805 31 8 1.7930 -0.3703 2.5046 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 3.2098 -2.3748 0.4297 40 1 3.3926 -2.6313 5.1716 41 1 2.8049 -5.3471 5.8335 42 1 3.4725 -5.9424 4.3004 43 1 3.7460 -7.6021 6.1542 44 1 5.3223 -7.0550 5.5180 45 1 4.9171 -7.8297 8.8843 46 1 6.3066 -7.7468 7.7540 47 1 8.0983 -3.7471 11.3167 48 1 5.8545 -4.1719 9.1504 49 1 7.4709 -4.6367 8.5456 50 1 5.7896 -3.0774 6.4921 51 1 4.2661 -3.6487 7.2278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980144350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:24 Heat of formation + Delta-G solvation = 33.956336 kcal Electronic energy + Delta-G solvation = -30365.097631 eV Core-core repulsion = 26267.723308 eV Total energy + Delta-G solvation = -4097.374323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.41765 -40.21636 -38.83734 -36.60714 -35.74649 -34.32495 -33.54960 -31.63510 -31.17134 -30.80442 -28.66999 -27.74220 -26.43691 -25.47453 -24.53580 -23.56246 -22.54056 -22.00253 -20.63388 -20.28774 -19.82816 -19.19120 -18.08779 -17.71226 -17.08418 -16.70367 -16.11195 -15.58184 -15.13724 -14.92441 -14.74331 -14.32848 -14.13678 -14.10103 -13.93762 -13.87371 -13.79994 -13.39099 -12.75960 -12.48998 -12.27602 -12.21547 -12.11661 -11.95878 -11.85319 -11.82934 -11.65214 -11.42823 -11.14995 -11.03202 -10.83788 -10.76787 -10.65920 -10.54321 -10.46371 -10.03283 -9.88835 -9.84541 -9.83812 -9.53758 -9.50790 -9.01645 -8.55150 -6.78991 -5.68317 -2.99365 0.81712 1.33993 2.53422 2.78884 2.96927 3.42682 3.47854 3.49724 3.67089 3.97243 4.30458 4.46399 4.52483 4.58374 4.71788 4.80357 4.89078 4.94701 5.02250 5.07535 5.16015 5.25402 5.29601 5.31128 5.38838 5.39898 5.51983 5.53987 5.62842 5.65424 5.65489 5.68645 5.68908 5.79155 6.02671 6.13805 6.21088 6.25888 6.29185 6.39879 6.42032 6.48192 6.56792 6.67681 6.85401 7.07570 7.24550 7.57988 7.66145 7.69121 7.85252 7.93165 8.26321 9.23880 9.84950 10.53529 11.44360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.001851 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.876690 B =15125.268019 C =15833.243040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.023 4.023 7 C 0.597 3.403 8 O -0.523 6.523 9 N -0.707 5.707 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.099 4.099 14 C -0.108 4.108 15 H 0.074 0.926 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.190 3.810 27 C -0.113 4.113 28 H 0.067 0.933 29 C -0.104 4.104 30 N -0.331 5.331 31 O 0.125 5.875 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.180 0.820 40 H 0.406 0.594 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.021 0.979 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 9.736 -24.124 29.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.210 4.210 4 C -0.090 4.090 5 C -0.204 4.204 6 C -0.182 4.182 7 C 0.381 3.619 8 O -0.398 6.398 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.163 4.163 13 C -0.138 4.138 14 C -0.128 4.128 15 H 0.092 0.908 16 C 0.015 3.985 17 N -0.336 5.336 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.066 3.934 27 C -0.133 4.133 28 H 0.085 0.915 29 C -0.143 4.143 30 N -0.032 5.032 31 O 0.049 5.951 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.198 0.802 40 H 0.241 0.759 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.239 9.463 -23.104 28.742 hybrid contribution 0.483 -0.215 0.478 0.713 sum -13.756 9.247 -22.626 28.048 Atomic orbital electron populations 1.21907 0.92938 1.02886 1.03195 1.19837 0.96879 0.96227 0.90167 1.21909 1.01798 0.94047 1.03197 1.24510 1.00144 0.97152 0.87209 1.22445 1.02690 0.98661 0.96603 1.23569 1.03143 0.98569 0.92954 1.16890 0.79808 0.82632 0.82617 1.90804 1.45648 1.41577 1.61725 1.46083 1.52855 1.31128 1.05690 1.21277 0.94071 0.85434 0.94880 0.89315 1.21880 0.98819 0.94889 1.00668 1.21291 1.00287 0.96623 0.95584 1.22109 0.98123 0.97884 0.94640 0.90768 1.21322 0.93405 0.92465 0.91290 1.45092 1.67804 1.07156 1.13597 1.19086 1.27147 0.98967 0.90132 0.90468 1.24794 1.00960 0.95851 0.99007 1.69973 1.45385 1.02412 1.39155 0.86132 0.79549 0.77246 0.83078 1.21702 1.21860 1.20694 1.20786 0.99023 0.87706 0.85922 1.22044 0.96879 0.94493 0.99867 0.91508 1.21506 1.00301 0.98931 0.93538 1.74202 1.09415 1.02664 1.16879 1.84758 1.54199 1.42525 1.13607 0.91622 0.91117 0.91973 0.87649 0.91937 0.91115 0.91611 0.80234 0.75911 0.92039 0.91957 0.91830 0.91628 0.94362 0.96097 0.93856 0.94409 0.93114 0.91233 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.18 37.16 0.34 -0.21 16 2 C -0.01 -0.05 3.34 -91.77 -0.31 -0.36 16 3 C -0.15 -0.57 9.18 37.16 0.34 -0.23 16 4 C -0.03 -0.21 5.98 -35.35 -0.21 -0.42 16 5 C -0.18 -1.70 10.91 -39.08 -0.43 -2.13 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 8.24 7.80 -12.10 -0.09 8.15 16 8 O -0.52 -8.55 16.58 5.37 0.09 -8.46 16 9 N -0.71 -9.04 5.03 -54.40 -0.27 -9.31 16 10 C 0.15 2.03 2.45 -67.74 -0.17 1.86 16 11 H 0.09 1.35 7.52 -51.92 -0.39 0.96 16 12 C -0.12 -1.66 5.38 -26.55 -0.14 -1.80 16 13 C -0.10 -1.40 5.71 -27.00 -0.15 -1.56 16 14 C -0.11 -1.88 2.47 -89.90 -0.22 -2.10 16 15 H 0.07 1.33 8.06 -51.94 -0.42 0.91 16 16 C 0.14 2.94 6.90 -2.81 -0.02 2.92 16 17 N -0.61 -15.76 3.45 -170.41 -0.59 -16.35 16 18 C -0.22 -6.37 10.29 -15.06 -0.15 -6.53 16 19 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 20 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 21 N -0.92 -27.37 10.41 55.49 0.58 -26.79 16 22 Si 0.91 22.42 29.56 -169.99 -5.02 17.40 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.19 4.59 5.08 -3.42 -0.02 4.57 16 27 C -0.11 -2.07 2.30 -90.35 -0.21 -2.28 16 28 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 29 C -0.10 -1.58 5.17 -27.08 -0.14 -1.72 16 30 N -0.33 -3.82 11.84 33.29 0.39 -3.42 16 31 O 0.12 1.20 11.18 17.24 0.19 1.40 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.11 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.18 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.41 4.67 8.37 -40.82 -0.34 4.33 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.04 1.00 7.66 -51.93 -0.40 0.60 16 49 H 0.05 1.37 7.26 -51.93 -0.38 1.00 16 50 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 1.04 8.06 -51.93 -0.42 0.63 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -32.78 407.04 -9.40 -42.18 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.63 Total: 0.32 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.27 Total: -3.10 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.11 Total: -55.88 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.28 Total: -7.06 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.78 -9.40 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980144350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.140 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds