Wall clock time and date at job start Wed Apr 1 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 C 1.50698 * 109.47237 * 120.00473 * 2 1 3 5 5 C 1.41260 * 126.70241 * 274.99791 * 4 2 1 6 6 C 1.36825 * 103.84994 * 179.97438 * 5 4 2 7 7 C 1.47506 * 126.94765 * 179.97438 * 6 5 4 8 8 O 1.21584 * 119.99886 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00366 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00408 * 180.02562 * 9 7 6 11 11 H 1.09003 * 108.76928 * 327.34840 * 10 9 7 12 12 C 1.51854 * 108.71403 * 209.01920 * 10 9 7 13 13 C 1.52246 * 110.36894 * 292.70512 * 12 10 9 14 14 C 1.52940 * 110.28032 * 298.06809 * 13 12 10 15 15 H 1.09007 * 112.23209 * 291.30349 * 14 13 12 16 16 C 1.55034 * 107.19781 * 167.88023 * 14 13 12 17 17 N 1.47124 * 107.08886 * 266.50024 * 16 14 13 18 18 C 1.36936 * 125.64169 * 180.14625 * 17 16 14 19 19 H 1.07998 * 120.00555 * 172.22767 * 18 17 16 20 20 C 1.38819 * 119.99801 * 352.22652 * 18 17 16 21 21 N 1.31616 * 119.99846 * 169.55035 * 20 18 17 22 22 Si 1.86795 * 120.00276 * 349.55249 * 20 18 17 23 23 H 1.48506 * 109.47183 * 65.61864 * 22 20 18 24 24 H 1.48503 * 109.47188 * 305.62052 * 22 20 18 25 25 H 1.48494 * 109.47403 * 185.61866 * 22 20 18 26 26 C 1.47686 * 108.71573 * 0.40877 * 17 16 14 27 27 C 1.53505 * 110.52566 * 57.02863 * 14 13 12 28 28 H 1.09009 * 108.57761 * 192.65930 * 27 14 13 29 29 C 1.49577 * 115.63228 * 314.50915 * 27 14 13 30 30 O 1.34639 * 106.10798 * 0.24407 * 6 5 4 31 31 N 1.20890 * 111.47121 * 359.55973 * 30 6 5 32 32 H 1.09006 * 109.47225 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46626 * 299.99967 * 1 2 3 34 34 H 1.08991 * 109.47238 * 59.99896 * 1 2 3 35 35 H 1.08998 * 109.46626 * 240.00032 * 2 1 3 36 36 H 1.09001 * 109.46804 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47081 * 299.99880 * 3 2 1 38 38 H 1.08993 * 109.46911 * 60.00525 * 3 2 1 39 39 H 1.08000 * 128.07694 * 359.96344 * 5 4 2 40 40 H 0.97003 * 119.99727 * 0.02562 * 9 7 6 41 41 H 1.09007 * 109.32326 * 52.97717 * 12 10 9 42 42 H 1.08995 * 109.32186 * 172.42919 * 12 10 9 43 43 H 1.09001 * 109.33926 * 177.81456 * 13 12 10 44 44 H 1.09008 * 109.33487 * 58.31002 * 13 12 10 45 45 H 1.08997 * 109.91029 * 147.14034 * 16 14 13 46 46 H 1.08998 * 110.06898 * 25.95007 * 16 14 13 47 47 H 0.96999 * 119.99948 * 5.12263 * 21 20 18 48 48 H 1.09001 * 110.45501 * 95.26945 * 26 17 16 49 49 H 1.09000 * 110.45435 * 217.82558 * 26 17 16 50 50 H 1.09000 * 108.07394 * 160.41720 * 29 27 14 51 51 H 1.09000 * 108.07649 * 276.95978 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2208 -0.1479 2.5124 6 6 2.6842 -1.1932 3.2638 7 6 3.0485 -1.1649 4.6929 8 8 2.9475 -0.1316 5.3256 9 7 3.4932 -2.2844 5.2974 10 6 3.8545 -2.2564 6.7169 11 1 4.2566 -1.2721 6.9571 12 6 4.9302 -3.2988 6.9665 13 6 4.3653 -4.6996 6.7749 14 6 3.2447 -4.9616 7.7821 15 1 3.6171 -5.0333 8.8041 16 6 2.5200 -6.2572 7.3349 17 7 1.3832 -5.8488 6.4950 18 6 0.4852 -6.6950 5.9013 19 1 -0.3879 -6.2956 5.4069 20 6 0.6972 -8.0665 5.9348 21 7 -0.2558 -8.8892 5.5510 22 14 2.3348 -8.7445 6.5245 23 1 2.5130 -8.4257 7.9640 24 1 3.4362 -8.1291 5.7412 25 1 2.3572 -10.2174 6.3373 26 6 1.3746 -4.3755 6.3931 27 6 2.1411 -3.9032 7.6470 28 1 1.4801 -3.9784 8.5106 29 6 2.6119 -2.4876 7.5393 30 8 2.7462 -2.2515 2.4338 31 7 2.3769 -1.9622 1.3196 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6768 1.9562 0.8900 39 1 2.0412 0.8698 2.8261 40 1 3.5741 -3.1087 4.7925 41 1 5.7525 -3.1430 6.2681 42 1 5.3020 -3.1963 7.9859 43 1 5.1594 -5.4320 6.9198 44 1 3.9705 -4.7942 5.7632 45 1 2.1599 -6.8013 8.2080 46 1 3.1994 -6.8862 6.7597 47 1 -1.0780 -8.5375 5.1752 48 1 1.8869 -4.0534 5.4865 49 1 0.3519 -3.9986 6.4081 50 1 1.8054 -1.8949 7.1077 51 1 2.7990 -2.1158 8.5467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980182224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:32 Heat of formation + Delta-G solvation = 47.540148 kcal Electronic energy + Delta-G solvation = -32017.192870 eV Core-core repulsion = 27920.407585 eV Total energy + Delta-G solvation = -4096.785284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.16755 -40.64222 -38.96042 -36.88940 -35.97500 -33.48389 -32.70414 -32.23348 -31.86887 -31.19490 -29.35021 -27.57799 -27.12684 -25.00454 -24.33140 -23.96667 -22.36603 -21.98891 -21.30950 -20.60145 -20.09332 -18.57999 -18.28387 -17.88557 -17.37218 -16.53855 -16.01977 -15.79742 -15.22696 -15.21938 -14.77104 -14.63037 -14.21404 -14.12037 -13.84550 -13.77675 -13.57905 -13.35029 -13.08232 -12.86475 -12.62063 -12.56740 -12.11517 -12.00714 -11.91716 -11.86538 -11.67853 -11.66425 -11.33678 -11.17741 -11.04098 -10.81926 -10.49895 -10.39801 -10.32188 -10.25738 -9.95198 -9.88626 -9.74537 -9.23442 -9.09823 -8.88821 -8.74322 -6.97268 -6.24423 -3.16724 0.65693 1.86401 2.46814 2.85430 3.08629 3.40162 3.45913 3.70014 3.71457 4.19992 4.57594 4.62311 4.65652 4.71928 4.73178 4.76564 4.82966 4.87113 5.00896 5.02757 5.14613 5.19317 5.23010 5.25462 5.37362 5.43673 5.46751 5.51179 5.56230 5.58123 5.59934 5.72306 5.73045 5.74326 5.84320 5.88467 5.95730 6.00765 6.02291 6.11571 6.20070 6.31192 6.37146 6.44836 6.52882 6.70047 6.80391 6.82405 7.20134 7.69991 7.80899 7.96611 8.37202 9.10068 9.61119 10.28562 11.25646 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.003381 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.724081 B = 8278.388851 C = 9899.431924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.145 4.145 4 C 0.015 3.985 5 C -0.150 4.150 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.519 6.519 9 N -0.704 5.704 10 C 0.155 3.845 11 H 0.091 0.909 12 C -0.124 4.124 13 C -0.116 4.116 14 C -0.089 4.089 15 H 0.082 0.918 16 C 0.096 3.904 17 N -0.613 5.613 18 C -0.317 4.317 19 H 0.076 0.924 20 C -0.029 4.029 21 N -0.935 5.935 22 Si 1.084 2.916 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.304 1.304 26 C 0.144 3.856 27 C -0.096 4.096 28 H 0.071 0.929 29 C -0.113 4.113 30 O 0.122 5.878 31 N -0.340 5.340 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.181 0.819 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.260 0.740 48 H 0.022 0.978 49 H 0.038 0.962 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 20.806 -4.084 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.203 4.203 4 C -0.143 4.143 5 C -0.172 4.172 6 C -0.148 4.148 7 C 0.390 3.610 8 O -0.396 6.396 9 N -0.356 5.356 10 C 0.051 3.949 11 H 0.109 0.891 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.108 4.108 15 H 0.101 0.899 16 C -0.028 4.028 17 N -0.341 5.341 18 C -0.444 4.444 19 H 0.094 0.906 20 C -0.228 4.228 21 N -0.578 5.578 22 Si 0.920 3.080 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.233 1.233 26 C 0.018 3.982 27 C -0.115 4.115 28 H 0.089 0.911 29 C -0.152 4.152 30 O 0.049 5.951 31 N -0.039 5.039 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.198 0.802 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.738 19.059 -4.190 22.274 hybrid contribution -1.054 1.678 -0.306 2.006 sum 9.683 20.737 -4.496 23.324 Atomic orbital electron populations 1.21847 0.93135 1.02767 1.02599 1.19552 0.96358 0.95404 0.92306 1.21855 1.01478 0.94228 1.02757 1.23627 1.02875 0.90360 0.97441 1.22752 1.01775 1.01281 0.91405 1.24281 1.07635 0.88422 0.94480 1.16502 0.77767 0.84410 0.82340 1.90849 1.54183 1.31256 1.63280 1.46317 1.64899 1.12046 1.12362 1.20498 0.95083 1.00471 0.78811 0.89086 1.21441 0.96999 0.94848 1.02937 1.21471 0.97933 0.95621 1.00309 1.21942 0.94814 0.95583 0.98475 0.89950 1.22433 0.90254 0.95292 0.94829 1.44826 1.30942 1.00888 1.57469 1.20186 1.01689 0.88951 1.33600 0.90599 1.25809 1.04614 0.91629 1.00706 1.70898 1.06807 1.35874 1.44198 0.83662 0.74456 0.73972 0.75944 1.21448 1.22660 1.23293 1.21578 0.97111 0.85313 0.94185 1.21187 0.97365 0.92822 1.00175 0.91086 1.20622 0.97435 0.97006 1.00139 1.85034 1.61766 1.34322 1.14022 1.73774 1.13768 1.16805 0.99528 0.92120 0.92033 0.91400 0.89178 0.92192 0.91402 0.91897 0.80178 0.75316 0.91174 0.90160 0.91493 0.91403 0.93688 0.94237 0.93025 0.96012 0.94410 0.91316 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.18 37.16 0.34 -0.81 16 2 C -0.02 -0.14 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -0.93 8.81 37.16 0.33 -0.60 16 4 C 0.01 0.17 6.20 -82.17 -0.51 -0.34 16 5 C -0.15 -1.69 10.13 -38.95 -0.39 -2.09 16 6 C -0.08 -1.06 7.29 -36.32 -0.26 -1.32 16 7 C 0.61 8.00 7.59 -12.48 -0.09 7.90 16 8 O -0.52 -7.79 16.52 5.29 0.09 -7.70 16 9 N -0.70 -8.54 3.90 -56.51 -0.22 -8.76 16 10 C 0.15 1.73 2.67 -69.62 -0.19 1.54 16 11 H 0.09 0.99 7.46 -51.93 -0.39 0.60 16 12 C -0.12 -1.24 5.47 -27.70 -0.15 -1.40 16 13 C -0.12 -1.53 4.64 -27.15 -0.13 -1.65 16 14 C -0.09 -1.38 3.47 -89.31 -0.31 -1.69 16 15 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 16 C 0.10 2.04 4.06 -2.63 -0.01 2.03 16 17 N -0.61 -14.86 3.37 -169.67 -0.57 -15.44 16 18 C -0.32 -9.19 10.61 -15.06 -0.16 -9.35 16 19 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 20 C -0.03 -0.87 5.50 -17.43 -0.10 -0.97 16 21 N -0.94 -29.96 13.70 55.49 0.76 -29.20 16 22 Si 1.08 27.19 24.51 -169.99 -4.17 23.02 16 23 H -0.29 -6.59 5.50 56.52 0.31 -6.28 16 24 H -0.30 -7.01 6.39 56.52 0.36 -6.65 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 26 C 0.14 2.84 6.21 -2.68 -0.02 2.82 16 27 C -0.10 -1.49 2.72 -91.33 -0.25 -1.74 16 28 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 29 C -0.11 -1.42 4.84 -29.53 -0.14 -1.56 16 30 O 0.12 1.72 11.04 15.56 0.17 1.89 16 31 N -0.34 -4.78 12.04 33.52 0.40 -4.38 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.38 7.48 -51.93 -0.39 -0.01 16 39 H 0.18 1.66 7.65 -52.49 -0.40 1.26 16 40 H 0.41 5.03 6.21 -40.82 -0.25 4.78 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.02 5.90 -51.92 -0.31 0.71 16 45 H 0.05 1.02 6.20 -51.93 -0.32 0.70 16 46 H 0.04 0.88 3.41 -51.93 -0.18 0.71 16 47 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 48 H 0.02 0.42 5.66 -51.93 -0.29 0.12 16 49 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -34.00 387.25 -8.19 -42.19 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.14 Total: 2.21 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.35 Total: -9.67 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.37 Total: -57.78 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: 0.26 Total: -5.81 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.17 Total: 23.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.00 -8.19 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980182224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.732 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds