Wall clock time and date at job start Wed Apr 1 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 C 1.50698 * 109.47237 * 120.00473 * 2 1 3 5 5 C 1.41260 * 126.70241 * 274.99791 * 4 2 1 6 6 C 1.36825 * 103.84994 * 179.97438 * 5 4 2 7 7 C 1.47506 * 126.94765 * 179.97438 * 6 5 4 8 8 O 1.21584 * 119.99886 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00366 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00408 * 180.02562 * 9 7 6 11 11 H 1.09003 * 108.76928 * 327.34840 * 10 9 7 12 12 C 1.51854 * 108.71403 * 209.01920 * 10 9 7 13 13 C 1.52246 * 110.36894 * 292.70512 * 12 10 9 14 14 C 1.52940 * 110.28032 * 298.06809 * 13 12 10 15 15 H 1.09007 * 112.23209 * 291.30349 * 14 13 12 16 16 C 1.55034 * 107.19781 * 167.88023 * 14 13 12 17 17 N 1.47124 * 107.08886 * 266.50024 * 16 14 13 18 18 C 1.36936 * 125.64169 * 180.14625 * 17 16 14 19 19 H 1.07998 * 120.00555 * 172.22767 * 18 17 16 20 20 C 1.38819 * 119.99801 * 352.22652 * 18 17 16 21 21 N 1.31616 * 119.99846 * 169.55035 * 20 18 17 22 22 Si 1.86795 * 120.00276 * 349.55249 * 20 18 17 23 23 H 1.48506 * 109.47183 * 65.61864 * 22 20 18 24 24 H 1.48503 * 109.47188 * 305.62052 * 22 20 18 25 25 H 1.48494 * 109.47403 * 185.61866 * 22 20 18 26 26 C 1.47686 * 108.71573 * 0.40877 * 17 16 14 27 27 C 1.53505 * 110.52566 * 57.02863 * 14 13 12 28 28 H 1.09009 * 108.57761 * 192.65930 * 27 14 13 29 29 C 1.49577 * 115.63228 * 314.50915 * 27 14 13 30 30 O 1.34639 * 106.10798 * 0.24407 * 6 5 4 31 31 N 1.20890 * 111.47121 * 359.55973 * 30 6 5 32 32 H 1.09006 * 109.47225 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46626 * 299.99967 * 1 2 3 34 34 H 1.08991 * 109.47238 * 59.99896 * 1 2 3 35 35 H 1.08998 * 109.46626 * 240.00032 * 2 1 3 36 36 H 1.09001 * 109.46804 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47081 * 299.99880 * 3 2 1 38 38 H 1.08993 * 109.46911 * 60.00525 * 3 2 1 39 39 H 1.08000 * 128.07694 * 359.96344 * 5 4 2 40 40 H 0.97003 * 119.99727 * 0.02562 * 9 7 6 41 41 H 1.09007 * 109.32326 * 52.97717 * 12 10 9 42 42 H 1.08995 * 109.32186 * 172.42919 * 12 10 9 43 43 H 1.09001 * 109.33926 * 177.81456 * 13 12 10 44 44 H 1.09008 * 109.33487 * 58.31002 * 13 12 10 45 45 H 1.08997 * 109.91029 * 147.14034 * 16 14 13 46 46 H 1.08998 * 110.06898 * 25.95007 * 16 14 13 47 47 H 0.96999 * 119.99948 * 5.12263 * 21 20 18 48 48 H 1.09001 * 110.45501 * 95.26945 * 26 17 16 49 49 H 1.09000 * 110.45435 * 217.82558 * 26 17 16 50 50 H 1.09000 * 108.07394 * 160.41720 * 29 27 14 51 51 H 1.09000 * 108.07649 * 276.95978 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2208 -0.1479 2.5124 6 6 2.6842 -1.1932 3.2638 7 6 3.0485 -1.1649 4.6929 8 8 2.9475 -0.1316 5.3256 9 7 3.4932 -2.2844 5.2974 10 6 3.8545 -2.2564 6.7169 11 1 4.2566 -1.2721 6.9571 12 6 4.9302 -3.2988 6.9665 13 6 4.3653 -4.6996 6.7749 14 6 3.2447 -4.9616 7.7821 15 1 3.6171 -5.0333 8.8041 16 6 2.5200 -6.2572 7.3349 17 7 1.3832 -5.8488 6.4950 18 6 0.4852 -6.6950 5.9013 19 1 -0.3879 -6.2956 5.4069 20 6 0.6972 -8.0665 5.9348 21 7 -0.2558 -8.8892 5.5510 22 14 2.3348 -8.7445 6.5245 23 1 2.5130 -8.4257 7.9640 24 1 3.4362 -8.1291 5.7412 25 1 2.3572 -10.2174 6.3373 26 6 1.3746 -4.3755 6.3931 27 6 2.1411 -3.9032 7.6470 28 1 1.4801 -3.9784 8.5106 29 6 2.6119 -2.4876 7.5393 30 8 2.7462 -2.2515 2.4338 31 7 2.3769 -1.9622 1.3196 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6768 1.9562 0.8900 39 1 2.0412 0.8698 2.8261 40 1 3.5741 -3.1087 4.7925 41 1 5.7525 -3.1430 6.2681 42 1 5.3020 -3.1963 7.9859 43 1 5.1594 -5.4320 6.9198 44 1 3.9705 -4.7942 5.7632 45 1 2.1599 -6.8013 8.2080 46 1 3.1994 -6.8862 6.7597 47 1 -1.0780 -8.5375 5.1752 48 1 1.8869 -4.0534 5.4865 49 1 0.3519 -3.9986 6.4081 50 1 1.8054 -1.8949 7.1077 51 1 2.7990 -2.1158 8.5467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980182224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:31 Heat of formation + Delta-G solvation = 24.960883 kcal Electronic energy + Delta-G solvation = -32018.171980 eV Core-core repulsion = 27920.407585 eV Total energy + Delta-G solvation = -4097.764395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.14681 -41.75112 -40.18715 -37.67026 -37.31010 -35.02377 -33.79056 -33.53903 -32.97429 -32.52851 -30.81070 -28.57833 -28.14251 -26.56900 -25.20112 -25.16605 -23.60829 -22.89798 -22.61404 -22.17743 -21.07399 -19.86043 -19.47116 -19.08273 -18.89509 -17.56453 -17.22176 -16.93836 -16.84038 -16.20562 -15.80244 -15.59891 -15.41291 -15.27921 -15.05825 -14.95735 -14.70691 -14.59463 -14.28577 -14.20802 -13.97178 -13.48872 -13.11170 -13.07840 -13.02925 -12.90198 -12.79833 -12.62083 -12.55148 -12.31510 -12.16217 -11.92200 -11.86090 -11.68287 -11.47133 -11.33912 -11.20461 -11.14938 -11.09500 -10.97085 -10.89274 -10.59797 -10.10445 -9.07601 -8.63780 -5.47445 -0.33884 0.94546 1.36684 1.48674 1.50344 1.70383 1.84267 2.13722 2.53859 2.89936 3.14714 3.31221 3.33156 3.55989 3.74110 3.76924 3.81213 3.87736 4.01877 4.05096 4.08568 4.13257 4.20077 4.28149 4.39005 4.44169 4.50308 4.57911 4.66748 4.72845 4.73607 4.75135 4.79228 4.86843 4.87343 4.90231 4.91245 5.02300 5.08895 5.16713 5.20139 5.21687 5.24830 5.31568 5.33731 5.43402 5.47152 5.52507 5.60303 6.08239 6.20245 6.80811 6.83543 6.98656 7.45048 8.10406 8.87086 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.003381 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.724081 B = 8278.388851 C = 9899.431924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.021 3.979 5 C -0.142 4.142 6 C -0.097 4.097 7 C 0.609 3.391 8 O -0.538 6.538 9 N -0.702 5.702 10 C 0.153 3.847 11 H 0.105 0.895 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.076 4.076 15 H 0.119 0.881 16 C 0.085 3.915 17 N -0.634 5.634 18 C -0.308 4.308 19 H 0.036 0.964 20 C -0.090 4.090 21 N -0.971 5.971 22 Si 1.123 2.877 23 H -0.250 1.250 24 H -0.274 1.274 25 H -0.317 1.317 26 C 0.138 3.862 27 C -0.080 4.080 28 H 0.065 0.935 29 C -0.107 4.107 30 O 0.102 5.898 31 N -0.372 5.372 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.203 0.797 40 H 0.408 0.592 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.038 0.962 47 H 0.243 0.757 48 H 0.031 0.969 49 H 0.013 0.987 50 H 0.051 0.949 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 23.427 -2.605 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.137 4.137 5 C -0.164 4.164 6 C -0.163 4.163 7 C 0.393 3.607 8 O -0.416 6.416 9 N -0.353 5.353 10 C 0.050 3.950 11 H 0.123 0.877 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.094 4.094 15 H 0.137 0.863 16 C -0.039 4.039 17 N -0.361 5.361 18 C -0.437 4.437 19 H 0.054 0.946 20 C -0.281 4.281 21 N -0.616 5.616 22 Si 0.950 3.050 23 H -0.175 1.175 24 H -0.201 1.201 25 H -0.247 1.247 26 C 0.013 3.987 27 C -0.099 4.099 28 H 0.083 0.917 29 C -0.146 4.146 30 O 0.031 5.969 31 N -0.074 5.074 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.220 0.780 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.031 0.969 50 H 0.070 0.930 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.973 21.730 -2.671 25.973 hybrid contribution -2.209 0.954 -0.856 2.554 sum 11.764 22.685 -3.527 25.796 Atomic orbital electron populations 1.21848 0.92648 1.01781 1.03866 1.19755 0.96678 0.96566 0.90851 1.21851 1.01376 0.92561 1.04065 1.24210 1.01268 0.89646 0.98612 1.23089 1.00536 1.01868 0.90939 1.24465 1.08357 0.88763 0.94684 1.16502 0.77509 0.84420 0.82287 1.90830 1.55244 1.31844 1.63675 1.46415 1.64270 1.11590 1.12999 1.20676 0.94839 1.01833 0.77648 0.87708 1.21404 0.96532 0.91764 1.05271 1.21474 0.97461 0.98381 0.98091 1.22014 0.94717 0.91705 1.00972 0.86295 1.22634 0.89298 0.98478 0.93491 1.44901 1.31234 1.02326 1.57675 1.20064 1.01261 0.89982 1.32345 0.94618 1.27277 1.07231 0.92373 1.01181 1.71019 1.07177 1.36551 1.46861 0.83266 0.71072 0.72561 0.78083 1.17510 1.20133 1.24699 1.21780 0.96735 0.83009 0.97200 1.21080 0.96944 0.94817 0.97044 0.91666 1.20575 0.97568 0.94235 1.02198 1.84996 1.62622 1.34973 1.14263 1.73767 1.15460 1.18361 0.99856 0.94208 0.91861 0.89060 0.89222 0.92339 0.89462 0.91261 0.78022 0.75507 0.89458 0.87160 0.89901 0.93890 0.95015 0.94512 0.94816 0.95146 0.96895 0.92992 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 2 C -0.02 -0.31 3.38 -11.54 -0.04 -0.35 16 3 C -0.14 -1.48 8.81 71.98 0.63 -0.85 16 4 C 0.02 0.47 6.20 43.55 0.27 0.74 16 5 C -0.14 -3.11 10.13 22.68 0.23 -2.88 16 6 C -0.10 -2.48 7.29 24.38 0.18 -2.30 16 7 C 0.61 15.46 7.59 86.69 0.66 16.12 16 8 O -0.54 -15.27 16.52 -3.98 -0.07 -15.34 16 9 N -0.70 -15.88 3.90 -450.98 -1.76 -17.64 16 10 C 0.15 2.85 2.67 43.90 0.12 2.97 16 11 H 0.11 1.80 7.46 -2.39 -0.02 1.78 16 12 C -0.11 -1.67 5.47 29.97 0.16 -1.51 16 13 C -0.12 -2.60 4.64 30.33 0.14 -2.46 16 14 C -0.08 -2.05 3.47 -9.95 -0.03 -2.08 16 15 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 16 C 0.08 3.42 4.06 86.96 0.35 3.77 16 17 N -0.63 -31.10 3.37 -690.73 -2.33 -33.43 16 18 C -0.31 -18.67 10.61 84.04 0.89 -17.77 16 19 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 20 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 21 N -0.97 -65.12 13.70 21.65 0.30 -64.82 16 22 Si 1.12 54.88 24.51 68.60 1.68 56.56 16 23 H -0.25 -10.70 5.50 99.48 0.55 -10.15 16 24 H -0.27 -12.20 6.39 99.48 0.64 -11.56 16 25 H -0.32 -16.09 7.11 99.48 0.71 -15.38 16 26 C 0.14 5.49 6.21 86.62 0.54 6.03 16 27 C -0.08 -2.29 2.72 -11.26 -0.03 -2.32 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 29 C -0.11 -2.34 4.84 28.78 0.14 -2.20 16 30 O 0.10 2.94 11.04 65.86 0.73 3.67 16 31 N -0.37 -10.76 12.04 -48.87 -0.59 -11.35 16 32 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.65 7.48 -2.39 -0.02 0.63 16 39 H 0.20 3.36 7.65 -2.91 -0.02 3.34 16 40 H 0.41 9.66 6.21 -92.71 -0.58 9.08 16 41 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.18 5.90 -2.38 -0.01 1.17 16 45 H 0.03 1.37 6.20 -2.39 -0.01 1.35 16 46 H 0.04 1.55 3.41 -2.39 -0.01 1.54 16 47 H 0.24 16.47 8.73 -92.71 -0.81 15.66 16 48 H 0.03 1.18 5.66 -2.39 -0.01 1.16 16 49 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.05 1.34 7.78 -2.39 -0.02 1.32 16 51 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -79.54 387.25 3.41 -76.13 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.10 Total: 17.85 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.34 Total: -11.64 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -4.38 Total: -127.24 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.66 Total: -11.67 kcal Atomic # 14 Polarization: 54.88 SS G_CDS: 1.68 Total: 56.56 kcal Total: -79.54 3.41 -76.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980182224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.093 kcal (2) G-P(sol) polarization free energy of solvation -79.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds