Wall clock time and date at job start Wed Apr 1 2020 04:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47495 * 2 1 4 4 N 1.29934 * 125.37691 * 90.00379 * 3 2 1 5 5 C 1.36065 * 108.47843 * 179.78017 * 4 3 2 6 6 C 1.47427 * 126.45107 * 180.28816 * 5 4 3 7 7 O 1.21611 * 119.99804 * 180.12047 * 6 5 4 8 8 N 1.34778 * 119.99827 * 0.11341 * 6 5 4 9 9 C 1.46504 * 119.99680 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.03113 * 33.97257 * 9 8 6 11 11 C 1.52527 * 109.04496 * 275.00529 * 9 8 6 12 12 C 1.53809 * 111.70641 * 293.49000 * 11 9 8 13 13 C 1.51625 * 107.03668 * 302.46119 * 12 11 9 14 14 H 1.09003 * 110.50631 * 304.77810 * 13 12 11 15 15 C 1.53058 * 116.66617 * 176.22366 * 13 12 11 16 16 N 1.48668 * 103.44614 * 204.13520 * 15 13 12 17 17 C 1.36933 * 125.78582 * 204.37764 * 16 15 13 18 18 H 1.08000 * 119.99937 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99998 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 60.00255 * 21 19 17 23 23 H 1.48502 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47196 * 300.00268 * 21 19 17 25 25 C 1.48247 * 108.42764 * 24.37646 * 16 15 13 26 26 C 1.52325 * 105.86325 * 3.18632 * 25 16 15 27 27 H 1.09006 * 110.22178 * 87.80830 * 26 25 16 28 28 C 1.51433 * 117.46638 * 214.64535 * 26 25 16 29 29 C 1.36092 * 107.10181 * 0.38542 * 5 4 3 30 30 C 1.50703 * 126.52565 * 179.88295 * 29 5 4 31 31 O 1.34051 * 125.38083 * 270.02441 * 3 2 1 32 32 H 1.08998 * 109.46905 * 300.00268 * 1 2 3 33 33 H 1.09005 * 109.46978 * 59.99473 * 1 2 3 34 34 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 35 35 H 1.09011 * 109.47155 * 239.99978 * 2 1 3 36 36 H 1.09005 * 109.46978 * 120.00527 * 2 1 3 37 37 H 0.96999 * 120.00100 * 0.02562 * 8 6 5 38 38 H 1.08992 * 109.03613 * 54.06700 * 11 9 8 39 39 H 1.09005 * 109.02885 * 172.92342 * 11 9 8 40 40 H 1.08998 * 109.94360 * 61.84417 * 12 11 9 41 41 H 1.09002 * 109.94063 * 182.99634 * 12 11 9 42 42 H 1.09002 * 110.63132 * 322.62403 * 15 13 12 43 43 H 1.09005 * 110.62640 * 85.64814 * 15 13 12 44 44 H 0.97001 * 119.99684 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.16828 * 244.09118 * 25 16 15 46 46 H 1.08995 * 110.23294 * 122.32238 * 25 16 15 47 47 H 1.09005 * 109.93839 * 59.43190 * 28 26 25 48 48 H 1.08996 * 109.94616 * 298.19643 * 28 26 25 49 49 H 1.09002 * 109.47152 * 179.71092 * 30 29 5 50 50 H 1.09001 * 109.46980 * 59.71192 * 30 29 5 51 51 H 1.09004 * 109.47113 * 299.71173 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2833 2.1299 1.0594 5 6 2.7219 3.3557 0.6639 6 6 3.1236 4.4682 1.5440 7 8 3.4974 5.5203 1.0619 8 7 3.0764 4.3192 2.8827 9 6 3.4761 5.4246 3.7572 10 1 3.2001 6.3681 3.2862 11 6 4.9890 5.3869 3.9471 12 6 5.4331 4.1396 4.7298 13 6 4.7037 4.1660 6.0588 14 1 4.8895 5.1064 6.5778 15 6 4.9188 2.9661 6.9844 16 7 3.7024 2.9663 7.8391 17 6 3.6038 2.4222 9.0918 18 1 2.6702 2.4761 9.6320 19 6 4.7039 1.8014 9.6674 20 7 5.8419 1.7363 9.0092 21 14 4.5692 1.0586 11.3760 22 1 3.5220 0.0057 11.3768 23 1 5.8732 0.4607 11.7600 24 1 4.2056 2.1192 12.3497 25 6 2.6142 3.6554 7.1052 26 6 3.1895 4.0044 5.7386 27 1 3.0432 3.1759 5.0455 28 6 2.7323 5.2980 5.0979 29 6 2.7181 3.3622 -0.6970 30 6 3.1228 4.5070 -1.5896 31 8 2.2907 2.1526 -1.0929 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8901 36 1 1.8933 -0.5139 0.8900 37 1 2.7785 3.4800 3.2671 38 1 5.4701 5.3829 2.9692 39 1 5.3011 6.2781 4.4918 40 1 5.1659 3.2391 4.1769 41 1 6.5102 4.1682 4.8948 42 1 4.9830 2.0431 6.4081 43 1 5.8141 3.1045 7.5907 44 1 6.6107 1.3028 9.4116 45 1 2.3214 4.5632 7.6326 46 1 1.7561 2.9926 6.9937 47 1 2.9821 6.1408 5.7425 48 1 1.6566 5.2673 4.9248 49 1 3.0172 4.2092 -2.6328 50 1 4.1610 4.7731 -1.3910 51 1 2.4829 5.3667 -1.3906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980183262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:24 Heat of formation + Delta-G solvation = -2.485899 kcal Electronic energy + Delta-G solvation = -31431.404849 eV Core-core repulsion = 27332.450272 eV Total energy + Delta-G solvation = -4098.954577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.66903 -40.25414 -38.62319 -35.64348 -35.29584 -34.35633 -33.15379 -31.90323 -31.80421 -30.61209 -28.92916 -27.40651 -26.21888 -25.15968 -24.66139 -23.21198 -21.94541 -21.72291 -20.53846 -20.50793 -19.73853 -18.88917 -18.08104 -17.21523 -16.69742 -16.08294 -15.91012 -15.18034 -14.95125 -14.92358 -14.77806 -14.29296 -14.13115 -13.84872 -13.71772 -13.57295 -13.42365 -13.20566 -12.91525 -12.71860 -12.59669 -12.34908 -12.13087 -12.06906 -11.88496 -11.59692 -11.44271 -11.41029 -11.13663 -10.98386 -10.92940 -10.82130 -10.69641 -10.57500 -10.12919 -10.03958 -9.87080 -9.77732 -9.49334 -9.21539 -9.04989 -8.79598 -8.60673 -6.77780 -5.59607 -3.00346 0.89471 1.82636 2.21199 3.10450 3.24163 3.43396 3.47356 3.48805 3.63489 4.33356 4.52104 4.58220 4.65297 4.74162 4.87348 4.91986 4.95026 4.97540 5.10213 5.22025 5.22382 5.38003 5.39530 5.40077 5.51397 5.56487 5.62182 5.69510 5.70907 5.71179 5.75468 5.79304 5.88177 5.91741 6.07083 6.20571 6.23913 6.29991 6.31405 6.43788 6.54869 6.64425 6.69853 6.72604 6.90656 7.09156 7.23715 7.59286 7.60909 7.66559 7.91381 8.16670 8.38824 9.25630 9.86979 10.54271 11.44701 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002701 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.260047 B =10365.436153 C =11749.278067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.195 3.805 4 N -0.453 5.453 5 C -0.074 4.074 6 C 0.602 3.398 7 O -0.541 6.541 8 N -0.701 5.701 9 C 0.150 3.850 10 H 0.085 0.915 11 C -0.126 4.126 12 C -0.101 4.101 13 C -0.113 4.113 14 H 0.070 0.930 15 C 0.165 3.835 16 N -0.607 5.607 17 C -0.220 4.220 18 H 0.075 0.925 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.144 3.856 26 C -0.108 4.108 27 H 0.065 0.935 28 C -0.109 4.109 29 C 0.035 3.965 30 C -0.065 4.065 31 O -0.197 6.197 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.410 0.590 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.012 0.988 43 H 0.103 0.897 44 H 0.251 0.749 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.099 0.901 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 2.588 -22.573 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.183 5.183 5 C -0.194 4.194 6 C 0.388 3.612 7 O -0.420 6.420 8 N -0.353 5.353 9 C 0.046 3.954 10 H 0.103 0.897 11 C -0.164 4.164 12 C -0.139 4.139 13 C -0.133 4.133 14 H 0.088 0.912 15 C 0.040 3.960 16 N -0.334 5.334 17 C -0.348 4.348 18 H 0.093 0.907 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.019 3.981 26 C -0.127 4.127 27 H 0.083 0.917 28 C -0.148 4.148 29 C -0.021 4.021 30 C -0.122 4.122 31 O -0.085 6.085 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.247 0.753 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.030 0.970 43 H 0.121 0.879 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.131 3.014 -22.106 23.423 hybrid contribution -0.168 -0.764 0.408 0.882 sum -7.299 2.250 -21.699 23.004 Atomic orbital electron populations 1.21795 0.92925 1.03167 1.03009 1.20134 0.96976 0.83828 1.05543 1.26248 1.00113 0.96886 0.78160 1.70771 1.15086 1.02517 1.29882 1.21565 1.10901 0.94697 0.92279 1.16692 0.77513 0.84973 0.82069 1.90777 1.48548 1.27178 1.75470 1.46062 1.65931 1.18323 1.04966 1.21126 0.94519 0.89698 0.90021 0.89684 1.21919 0.94613 0.99376 1.00527 1.21272 0.99922 0.97009 0.95659 1.22389 0.93857 1.01609 0.95446 0.91202 1.21616 0.92731 0.91180 0.90443 1.45114 1.06888 1.66338 1.15049 1.19040 0.96792 1.28682 0.90311 0.90666 1.24765 0.95955 1.01366 0.98718 1.69814 1.01466 1.49002 1.36879 0.86175 0.76606 0.78929 0.83922 1.21315 1.21632 1.21253 1.20952 0.91820 0.95142 0.90204 1.21788 0.97849 0.96060 0.97027 0.91689 1.21604 0.99357 0.99055 0.94750 1.23707 0.98143 0.85729 0.94566 1.20434 1.03772 0.91214 0.96753 1.84320 1.63903 1.22213 1.38048 0.91530 0.92262 0.90703 0.88769 0.87150 0.75272 0.92041 0.91194 0.92328 0.91920 0.97025 0.87889 0.93808 0.95962 0.95900 0.90066 0.91593 0.90451 0.88240 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.03 -0.19 6.56 -27.89 -0.18 -0.37 16 3 C 0.20 2.13 7.56 -13.08 -0.10 2.03 16 4 N -0.45 -6.06 11.06 -7.65 -0.08 -6.15 16 5 C -0.07 -1.01 6.99 -83.02 -0.58 -1.59 16 6 C 0.60 8.75 7.76 -12.52 -0.10 8.65 16 7 O -0.54 -8.48 15.24 5.27 0.08 -8.40 16 8 N -0.70 -9.78 4.65 -54.68 -0.25 -10.03 16 9 C 0.15 2.03 2.71 -67.73 -0.18 1.85 16 10 H 0.09 1.14 7.52 -51.93 -0.39 0.75 16 11 C -0.13 -1.76 5.43 -26.55 -0.14 -1.90 16 12 C -0.10 -1.62 5.57 -27.01 -0.15 -1.77 16 13 C -0.11 -2.13 2.50 -89.90 -0.22 -2.35 16 14 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 15 C 0.16 4.01 5.52 -2.81 -0.02 4.00 16 16 N -0.61 -15.74 3.45 -170.41 -0.59 -16.33 16 17 C -0.22 -6.21 10.30 -15.06 -0.16 -6.37 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.20 10.11 55.49 0.56 -26.64 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.14 3.03 6.98 -3.42 -0.02 3.00 16 26 C -0.11 -1.86 2.25 -90.37 -0.20 -2.06 16 27 H 0.06 1.14 6.08 -51.93 -0.32 0.82 16 28 C -0.11 -1.51 5.37 -27.08 -0.15 -1.66 16 29 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 30 C -0.07 -0.55 9.13 36.01 0.33 -0.22 16 31 O -0.20 -2.18 10.73 6.51 0.07 -2.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.41 5.86 6.53 -40.82 -0.27 5.60 16 38 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 2.84 5.93 -51.93 -0.31 2.53 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 51 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -32.78 401.56 -9.45 -42.24 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.40 Total: 3.70 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.87 Total: 0.37 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.37 Total: -59.15 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.15 Total: -10.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.78 -9.45 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980183262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.750 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds