Wall clock time and date at job start Wed Apr 1 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47495 * 2 1 4 4 N 1.29934 * 125.37691 * 90.00379 * 3 2 1 5 5 C 1.36065 * 108.47843 * 179.78017 * 4 3 2 6 6 C 1.47427 * 126.45107 * 180.28816 * 5 4 3 7 7 O 1.21611 * 119.99804 * 180.12047 * 6 5 4 8 8 N 1.34778 * 119.99827 * 0.11341 * 6 5 4 9 9 C 1.46504 * 119.99680 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.03113 * 33.97257 * 9 8 6 11 11 C 1.52527 * 109.04496 * 275.00529 * 9 8 6 12 12 C 1.53809 * 111.70641 * 293.49000 * 11 9 8 13 13 C 1.51625 * 107.03668 * 302.46119 * 12 11 9 14 14 H 1.09003 * 110.50631 * 304.77810 * 13 12 11 15 15 C 1.53058 * 116.66617 * 176.22366 * 13 12 11 16 16 N 1.48668 * 103.44614 * 204.13520 * 15 13 12 17 17 C 1.36933 * 125.78582 * 204.37764 * 16 15 13 18 18 H 1.08000 * 119.99937 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99998 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 60.00255 * 21 19 17 23 23 H 1.48502 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47196 * 300.00268 * 21 19 17 25 25 C 1.48247 * 108.42764 * 24.37646 * 16 15 13 26 26 C 1.52325 * 105.86325 * 3.18632 * 25 16 15 27 27 H 1.09006 * 110.22178 * 87.80830 * 26 25 16 28 28 C 1.51433 * 117.46638 * 214.64535 * 26 25 16 29 29 C 1.36092 * 107.10181 * 0.38542 * 5 4 3 30 30 C 1.50703 * 126.52565 * 179.88295 * 29 5 4 31 31 O 1.34051 * 125.38083 * 270.02441 * 3 2 1 32 32 H 1.08998 * 109.46905 * 300.00268 * 1 2 3 33 33 H 1.09005 * 109.46978 * 59.99473 * 1 2 3 34 34 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 35 35 H 1.09011 * 109.47155 * 239.99978 * 2 1 3 36 36 H 1.09005 * 109.46978 * 120.00527 * 2 1 3 37 37 H 0.96999 * 120.00100 * 0.02562 * 8 6 5 38 38 H 1.08992 * 109.03613 * 54.06700 * 11 9 8 39 39 H 1.09005 * 109.02885 * 172.92342 * 11 9 8 40 40 H 1.08998 * 109.94360 * 61.84417 * 12 11 9 41 41 H 1.09002 * 109.94063 * 182.99634 * 12 11 9 42 42 H 1.09002 * 110.63132 * 322.62403 * 15 13 12 43 43 H 1.09005 * 110.62640 * 85.64814 * 15 13 12 44 44 H 0.97001 * 119.99684 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.16828 * 244.09118 * 25 16 15 46 46 H 1.08995 * 110.23294 * 122.32238 * 25 16 15 47 47 H 1.09005 * 109.93839 * 59.43190 * 28 26 25 48 48 H 1.08996 * 109.94616 * 298.19643 * 28 26 25 49 49 H 1.09002 * 109.47152 * 179.71092 * 30 29 5 50 50 H 1.09001 * 109.46980 * 59.71192 * 30 29 5 51 51 H 1.09004 * 109.47113 * 299.71173 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2833 2.1299 1.0594 5 6 2.7219 3.3557 0.6639 6 6 3.1236 4.4682 1.5440 7 8 3.4974 5.5203 1.0619 8 7 3.0764 4.3192 2.8827 9 6 3.4761 5.4246 3.7572 10 1 3.2001 6.3681 3.2862 11 6 4.9890 5.3869 3.9471 12 6 5.4331 4.1396 4.7298 13 6 4.7037 4.1660 6.0588 14 1 4.8895 5.1064 6.5778 15 6 4.9188 2.9661 6.9844 16 7 3.7024 2.9663 7.8391 17 6 3.6038 2.4222 9.0918 18 1 2.6702 2.4761 9.6320 19 6 4.7039 1.8014 9.6674 20 7 5.8419 1.7363 9.0092 21 14 4.5692 1.0586 11.3760 22 1 3.5220 0.0057 11.3768 23 1 5.8732 0.4607 11.7600 24 1 4.2056 2.1192 12.3497 25 6 2.6142 3.6554 7.1052 26 6 3.1895 4.0044 5.7386 27 1 3.0432 3.1759 5.0455 28 6 2.7323 5.2980 5.0979 29 6 2.7181 3.3622 -0.6970 30 6 3.1228 4.5070 -1.5896 31 8 2.2907 2.1526 -1.0929 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8901 36 1 1.8933 -0.5139 0.8900 37 1 2.7785 3.4800 3.2671 38 1 5.4701 5.3829 2.9692 39 1 5.3011 6.2781 4.4918 40 1 5.1659 3.2391 4.1769 41 1 6.5102 4.1682 4.8948 42 1 4.9830 2.0431 6.4081 43 1 5.8141 3.1045 7.5907 44 1 6.6107 1.3028 9.4116 45 1 2.3214 4.5632 7.6326 46 1 1.7561 2.9926 6.9937 47 1 2.9821 6.1408 5.7425 48 1 1.6566 5.2673 4.9248 49 1 3.0172 4.2092 -2.6328 50 1 4.1610 4.7731 -1.3910 51 1 2.4829 5.3667 -1.3906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980183262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:23 Heat of formation + Delta-G solvation = -24.157629 kcal Electronic energy + Delta-G solvation = -31432.344606 eV Core-core repulsion = 27332.450272 eV Total energy + Delta-G solvation = -4099.894333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.53464 -41.50840 -39.95373 -37.16343 -36.14603 -35.07554 -34.73570 -33.46797 -32.60459 -32.02592 -30.60557 -28.34679 -27.71761 -26.88813 -25.56915 -24.03273 -23.54116 -22.63654 -21.90525 -21.49034 -21.44114 -20.17267 -19.08108 -18.77538 -18.08356 -17.18528 -16.93795 -16.75361 -16.28296 -15.88186 -15.70892 -15.59985 -15.43079 -15.19560 -14.86671 -14.72032 -14.47861 -14.18195 -14.13009 -13.90176 -13.53256 -13.47485 -13.42552 -13.34162 -13.03103 -12.79710 -12.66493 -12.63627 -12.56871 -12.40157 -12.33785 -12.07430 -11.99303 -11.95099 -11.85442 -11.71778 -11.42093 -11.21121 -11.00870 -10.78958 -10.69017 -10.13678 -9.77649 -8.87021 -7.75169 -5.18980 -0.00432 0.91380 1.41154 1.45964 1.49491 1.55800 2.08555 2.20300 2.50358 2.83060 3.34145 3.53193 3.55240 3.61764 3.65845 3.76823 3.83474 4.05586 4.11903 4.21827 4.22407 4.33125 4.35039 4.43242 4.47230 4.54575 4.57580 4.59265 4.70434 4.75743 4.83675 4.87141 4.91541 4.95163 4.97582 4.99533 5.03730 5.06627 5.07855 5.11953 5.17388 5.26114 5.31241 5.37589 5.46970 5.51358 5.56350 5.74223 5.84439 6.28717 6.30297 6.56593 7.07356 7.10435 7.77779 8.44974 9.26965 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002701 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.260047 B =10365.436153 C =11749.278067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C 0.198 3.802 4 N -0.484 5.484 5 C -0.107 4.107 6 C 0.601 3.399 7 O -0.556 6.556 8 N -0.702 5.702 9 C 0.154 3.846 10 H 0.096 0.904 11 C -0.117 4.117 12 C -0.093 4.093 13 C -0.101 4.101 14 H 0.072 0.928 15 C 0.169 3.831 16 N -0.631 5.631 17 C -0.238 4.238 18 H 0.080 0.920 19 C -0.070 4.070 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.139 3.861 26 C -0.091 4.091 27 H 0.061 0.939 28 C -0.098 4.098 29 C 0.042 3.958 30 C -0.064 4.064 31 O -0.196 6.196 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.407 0.593 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.061 0.939 42 H -0.018 1.018 43 H 0.067 0.933 44 H 0.246 0.754 45 H 0.032 0.968 46 H 0.023 0.977 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 3.201 -24.014 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.011 4.011 4 N -0.214 5.214 5 C -0.226 4.226 6 C 0.388 3.612 7 O -0.436 6.436 8 N -0.352 5.352 9 C 0.051 3.949 10 H 0.114 0.886 11 C -0.155 4.155 12 C -0.131 4.131 13 C -0.120 4.120 14 H 0.090 0.910 15 C 0.045 3.955 16 N -0.358 5.358 17 C -0.367 4.367 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.202 1.202 25 C 0.014 3.986 26 C -0.110 4.110 27 H 0.079 0.921 28 C -0.136 4.136 29 C -0.015 4.015 30 C -0.120 4.120 31 O -0.083 6.083 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.000 1.000 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.041 0.959 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.123 0.877 50 H 0.117 0.883 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.401 3.647 -23.554 25.272 hybrid contribution 0.186 -1.024 0.828 1.330 sum -8.215 2.623 -22.726 24.307 Atomic orbital electron populations 1.21775 0.92132 1.04327 1.02211 1.20402 0.97501 0.81723 1.06891 1.27060 0.98653 0.97785 0.77633 1.70741 1.16503 1.02959 1.31176 1.21598 1.12943 0.94951 0.93136 1.16826 0.77125 0.85067 0.82192 1.90754 1.49384 1.27770 1.75700 1.46075 1.65879 1.18265 1.05011 1.21119 0.93986 0.90056 0.89760 0.88590 1.21846 0.95019 0.98499 1.00155 1.21187 0.99632 0.98021 0.94234 1.22159 0.95586 0.98763 0.95519 0.91009 1.21353 0.91302 0.92331 0.90520 1.45455 1.08747 1.66549 1.15000 1.19441 0.97014 1.28685 0.91561 0.90253 1.25629 0.95737 1.02267 1.02556 1.70085 1.01908 1.49708 1.38271 0.85129 0.76337 0.78231 0.79494 1.20541 1.22002 1.20228 1.21140 0.90752 0.94905 0.91757 1.21655 0.96143 0.98037 0.95186 0.92065 1.21555 1.00387 0.97095 0.94576 1.24232 0.96600 0.86287 0.94411 1.20562 1.03509 0.90141 0.97759 1.84351 1.63832 1.22105 1.38031 0.93300 0.92044 0.88556 0.86160 0.87001 0.75584 0.92073 0.89568 0.93300 0.91985 1.00039 0.91465 0.94487 0.95005 0.95879 0.88773 0.89912 0.87748 0.88335 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.84 16 2 C -0.03 -0.34 6.56 29.85 0.20 -0.14 16 3 C 0.20 4.15 7.56 88.39 0.67 4.81 16 4 N -0.48 -12.87 11.06 -293.04 -3.24 -16.11 16 5 C -0.11 -2.88 6.99 40.41 0.28 -2.59 16 6 C 0.60 17.01 7.76 86.66 0.67 17.68 16 7 O -0.56 -16.77 15.24 -4.06 -0.06 -16.83 16 8 N -0.70 -18.87 4.65 -445.18 -2.07 -20.94 16 9 C 0.15 3.85 2.71 45.12 0.12 3.97 16 10 H 0.10 2.30 7.52 -2.39 -0.02 2.28 16 11 C -0.12 -3.05 5.43 30.71 0.17 -2.88 16 12 C -0.09 -2.95 5.57 30.42 0.17 -2.78 16 13 C -0.10 -3.78 2.50 -10.33 -0.03 -3.81 16 14 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 15 C 0.17 8.59 5.52 85.98 0.47 9.07 16 16 N -0.63 -33.40 3.45 -693.05 -2.39 -35.80 16 17 C -0.24 -13.69 10.30 84.03 0.87 -12.82 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 20 N -0.95 -57.98 10.11 21.65 0.22 -57.76 16 21 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.14 5.78 6.98 85.82 0.60 6.38 16 26 C -0.09 -3.06 2.25 -10.63 -0.02 -3.09 16 27 H 0.06 2.12 6.08 -2.38 -0.01 2.11 16 28 C -0.10 -2.47 5.37 30.37 0.16 -2.31 16 29 C 0.04 0.92 7.44 25.19 0.19 1.10 16 30 C -0.06 -0.96 9.13 71.24 0.65 -0.31 16 31 O -0.20 -4.05 10.73 0.38 0.00 -4.05 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.41 11.48 6.53 -92.71 -0.61 10.88 16 38 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 39 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.07 3.90 5.93 -2.38 -0.01 3.89 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 46 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.09 2.21 8.03 -2.38 -0.02 2.19 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.10 1.55 8.06 -2.39 -0.02 1.53 16 51 H 0.10 1.51 8.09 -2.38 -0.02 1.50 16 Total: -1.00 -73.06 401.56 1.16 -71.90 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.33 Total: 23.14 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.35 Total: 7.88 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -7.48 Total: -130.61 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.06 1.16 -71.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980183262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds