Wall clock time and date at job start Wed Apr 1 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 C 1.50692 * 109.47127 * 120.00254 * 2 1 3 5 5 O 1.34259 * 126.52552 * 299.99874 * 4 2 1 6 6 C 1.34047 * 108.22862 * 179.97438 * 5 4 2 7 7 N 1.29934 * 109.24231 * 359.76314 * 6 5 4 8 8 C 1.36061 * 108.47750 * 0.37835 * 7 6 5 9 9 C 1.47420 * 126.45217 * 179.88509 * 8 7 6 10 10 O 1.21610 * 120.00402 * 179.41595 * 9 8 7 11 11 N 1.34784 * 119.99760 * 359.68946 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72621 * 11 9 8 13 13 H 1.09001 * 109.71286 * 34.99724 * 12 11 9 14 14 C 1.53303 * 109.71237 * 274.39813 * 12 11 9 15 15 C 1.52620 * 108.50336 * 176.52713 * 14 12 11 16 16 C 1.52989 * 110.92985 * 62.21298 * 15 14 12 17 17 H 1.08993 * 112.43176 * 73.38567 * 16 15 14 18 18 C 1.55847 * 106.36710 * 198.10777 * 16 15 14 19 19 N 1.47625 * 104.46792 * 77.05582 * 18 16 15 20 20 C 1.36944 * 125.72279 * 204.86824 * 19 18 16 21 21 H 1.07993 * 119.99846 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00026 * 359.97438 * 20 19 18 23 23 N 1.31625 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00014 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46774 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46914 * 120.00070 * 24 22 20 27 27 H 1.48496 * 109.46945 * 240.00122 * 24 22 20 28 28 C 1.47422 * 108.54711 * 24.86921 * 19 18 16 29 29 C 1.53373 * 106.51604 * 359.32994 * 28 19 18 30 30 H 1.08997 * 108.95594 * 91.97595 * 29 28 19 31 31 C 1.50902 * 113.03101 * 212.45197 * 29 28 19 32 32 H 1.08998 * 109.47061 * 299.99612 * 1 2 3 33 33 H 1.09005 * 109.47243 * 59.99982 * 1 2 3 34 34 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47061 * 240.00388 * 2 1 3 36 36 H 1.09005 * 109.47221 * 300.00032 * 3 2 1 37 37 H 1.09002 * 109.47213 * 59.99906 * 3 2 1 38 38 H 1.09003 * 109.47158 * 179.97438 * 3 2 1 39 39 H 1.07997 * 125.37713 * 180.02562 * 6 5 4 40 40 H 0.97005 * 119.99846 * 359.72409 * 11 9 8 41 41 H 1.08999 * 109.63431 * 296.23642 * 14 12 11 42 42 H 1.09000 * 109.62629 * 56.82332 * 14 12 11 43 43 H 1.09006 * 109.18164 * 182.58033 * 15 14 12 44 44 H 1.08996 * 109.19190 * 301.83216 * 15 14 12 45 45 H 1.08997 * 110.43685 * 195.80505 * 18 16 15 46 46 H 1.09001 * 110.43396 * 318.30797 * 18 16 15 47 47 H 0.96994 * 120.00276 * 180.02562 * 23 22 20 48 48 H 1.09007 * 110.04400 * 240.05851 * 28 19 18 49 49 H 1.09003 * 110.08971 * 118.61740 * 28 19 18 50 50 H 1.08993 * 109.09962 * 305.34219 * 31 29 28 51 51 H 1.09004 * 109.02096 * 186.41513 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7902 -0.3679 2.5057 6 6 2.4123 -1.2488 3.3019 7 7 3.0274 -2.1281 2.5693 8 6 2.8174 -1.8217 1.2604 9 6 3.3372 -2.5584 0.0940 10 8 3.0665 -2.1849 -1.0312 11 7 4.1080 -3.6492 0.2748 12 6 4.6196 -4.3848 -0.8842 13 1 4.8433 -3.6883 -1.6923 14 6 3.5737 -5.4027 -1.3535 15 6 4.0977 -6.0909 -2.6109 16 6 5.3863 -6.8610 -2.3157 17 1 5.2050 -7.7724 -1.7462 18 6 6.0704 -7.1164 -3.6925 19 7 6.6840 -5.8209 -4.0455 20 6 6.9721 -5.3917 -5.3136 21 1 7.4234 -4.4225 -5.4661 22 6 6.6852 -6.2029 -6.4028 23 7 6.1356 -7.3844 -6.2169 24 14 7.0789 -5.6178 -8.1326 25 1 7.6885 -4.2650 -8.0708 26 1 8.0327 -6.5613 -8.7692 27 1 5.8292 -5.5621 -8.9328 28 6 6.9344 -5.0668 -2.8037 29 6 6.4320 -5.9454 -1.6513 30 1 7.2573 -6.5569 -1.2865 31 6 5.8864 -5.1457 -0.4938 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.1300 1.4426 0.0005 39 1 2.4003 -1.2328 4.3817 40 1 4.3240 -3.9471 1.1723 41 1 3.4079 -6.1443 -0.5721 42 1 2.6390 -4.8895 -1.5794 43 1 3.3425 -6.7847 -2.9805 44 1 4.2965 -5.3390 -3.3745 45 1 6.8354 -7.8873 -3.6002 46 1 5.3289 -7.4022 -4.4387 47 1 5.9354 -7.9513 -6.9780 48 1 6.3865 -4.1246 -2.8218 49 1 8.0016 -4.8760 -2.6903 50 1 6.6425 -4.4329 -0.1648 51 1 5.6556 -5.8230 0.3286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980207338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:39 Heat of formation + Delta-G solvation = -4.333102 kcal Electronic energy + Delta-G solvation = -31491.456559 eV Core-core repulsion = 27392.421882 eV Total energy + Delta-G solvation = -4099.034677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.74610 -40.05403 -38.75684 -36.11079 -35.39129 -35.02780 -33.25546 -31.60056 -30.76763 -29.93195 -28.83491 -27.51820 -26.08596 -25.13032 -23.95868 -23.67153 -22.14775 -21.56853 -20.71458 -20.50778 -19.82655 -18.70799 -17.74246 -17.06346 -16.80784 -16.42246 -16.30196 -15.40895 -15.08490 -14.89992 -14.73337 -14.42866 -13.99474 -13.84972 -13.76586 -13.62525 -13.50173 -13.36448 -12.55303 -12.45155 -12.17189 -12.06384 -12.00145 -11.71807 -11.66698 -11.58606 -11.43808 -11.36975 -11.06799 -11.00355 -10.98107 -10.85766 -10.56013 -10.44731 -10.04466 -9.95151 -9.75701 -9.63799 -9.39237 -9.33813 -9.23095 -8.82315 -8.58156 -6.74362 -5.58476 -2.99403 0.86569 1.79820 2.25890 3.09604 3.22721 3.44253 3.49942 3.52250 3.76053 4.20132 4.50240 4.55140 4.71719 4.72974 4.91226 4.98244 5.04178 5.20506 5.27818 5.38105 5.39984 5.45793 5.52091 5.53598 5.54912 5.63824 5.67919 5.71685 5.74827 5.81017 5.86929 5.91818 5.94577 5.98856 6.07803 6.17683 6.26078 6.37255 6.48347 6.51800 6.61326 6.70717 6.77318 6.92406 7.04859 7.12243 7.20910 7.56167 7.57029 7.70098 7.93629 8.17876 8.43652 9.29221 9.89986 10.55930 11.45195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002554 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.967040 B =10961.784136 C =12024.148652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C -0.146 4.146 4 C 0.054 3.946 5 O -0.198 6.198 6 C 0.170 3.830 7 N -0.463 5.463 8 C -0.075 4.075 9 C 0.600 3.400 10 O -0.530 6.530 11 N -0.705 5.705 12 C 0.144 3.856 13 H 0.097 0.903 14 C -0.123 4.123 15 C -0.101 4.101 16 C -0.114 4.114 17 H 0.071 0.929 18 C 0.156 3.844 19 N -0.602 5.602 20 C -0.217 4.217 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.139 3.861 29 C -0.090 4.090 30 H 0.066 0.934 31 C -0.107 4.107 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.254 0.746 40 H 0.404 0.596 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.007 0.993 46 H 0.109 0.891 47 H 0.250 0.750 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 12.193 21.015 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.002 4.002 5 O -0.084 6.084 6 C -0.059 4.059 7 N -0.192 5.192 8 C -0.195 4.195 9 C 0.386 3.614 10 O -0.407 6.407 11 N -0.355 5.355 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.161 4.161 15 C -0.139 4.139 16 C -0.134 4.134 17 H 0.090 0.910 18 C 0.031 3.969 19 N -0.328 5.328 20 C -0.345 4.345 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.014 3.986 29 C -0.109 4.109 30 H 0.084 0.916 31 C -0.145 4.145 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.269 0.731 40 H 0.239 0.761 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.025 0.975 46 H 0.127 0.873 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.007 11.896 20.203 25.492 hybrid contribution 0.117 0.528 -0.217 0.583 sum -9.890 12.424 19.986 25.527 Atomic orbital electron populations 1.21853 0.93093 1.02668 1.02702 1.20375 0.96806 0.96503 0.91346 1.21854 1.01716 0.94063 1.02703 1.23846 0.96901 0.95448 0.84045 1.84355 1.58958 1.48803 1.16257 1.27985 0.93573 0.85489 0.98840 1.70726 1.21243 1.25821 1.01387 1.21575 1.06497 0.99401 0.92057 1.16701 0.78522 0.80085 0.86136 1.90772 1.58831 1.67846 1.23217 1.45928 1.50941 1.27733 1.10864 1.21185 0.93559 0.93552 0.87657 0.88486 1.21899 0.98024 0.97463 0.98740 1.21363 0.96306 0.99726 0.96511 1.22593 0.94590 0.96722 0.99446 0.91031 1.22237 0.96344 0.86779 0.91498 1.44599 1.71857 1.15883 1.00422 1.19127 1.33369 1.00507 0.81538 0.90558 1.24756 1.01658 0.96507 0.97868 1.69794 1.48818 1.10026 1.28507 0.86026 0.77451 0.77660 0.84576 1.20587 1.21898 1.21799 1.21227 0.96675 0.94252 0.86488 1.21238 0.98313 0.97098 0.94270 0.91568 1.21197 0.95980 0.98724 0.98646 0.92338 0.90963 0.92121 0.84516 0.90957 0.92341 0.92100 0.73054 0.76069 0.92472 0.92206 0.92491 0.90307 0.97460 0.87290 0.93901 0.95744 0.96303 0.91873 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.61 16 3 C -0.15 -1.19 9.17 37.16 0.34 -0.85 16 4 C 0.05 0.60 5.95 -35.08 -0.21 0.39 16 5 O -0.20 -1.80 10.73 6.51 0.07 -1.73 16 6 C 0.17 1.27 13.19 51.96 0.69 1.96 16 7 N -0.46 -4.98 11.06 -11.49 -0.13 -5.11 16 8 C -0.08 -0.95 6.99 -83.02 -0.58 -1.53 16 9 C 0.60 8.78 7.79 -12.52 -0.10 8.68 16 10 O -0.53 -9.08 14.13 5.27 0.07 -9.00 16 11 N -0.71 -9.41 5.09 -54.81 -0.28 -9.69 16 12 C 0.14 2.16 2.31 -67.86 -0.16 2.00 16 13 H 0.10 1.75 6.20 -51.93 -0.32 1.43 16 14 C -0.12 -1.91 5.53 -26.77 -0.15 -2.05 16 15 C -0.10 -1.85 4.81 -26.93 -0.13 -1.98 16 16 C -0.11 -2.13 3.72 -88.55 -0.33 -2.46 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.16 3.79 5.18 -1.91 -0.01 3.78 16 19 N -0.60 -15.46 2.93 -169.58 -0.50 -15.96 16 20 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C 0.14 2.95 6.24 -3.35 -0.02 2.93 16 29 C -0.09 -1.55 2.69 -90.93 -0.24 -1.80 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 C -0.11 -1.50 4.83 -27.87 -0.13 -1.63 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.14 1.67 5.52 -51.93 -0.29 1.38 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.25 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.40 4.66 8.33 -40.82 -0.34 4.31 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.72 7.17 -51.93 -0.37 1.35 16 45 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.11 2.97 5.68 -51.93 -0.30 2.68 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.02 0.53 6.50 -51.93 -0.34 0.19 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -32.74 397.23 -8.74 -41.48 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.26 Total: 3.83 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.24 Total: -0.76 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.34 Total: -57.26 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.14 Total: -10.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.74 -8.74 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980207338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.150 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds