Wall clock time and date at job start Wed Apr 1 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 C 1.50692 * 109.47127 * 120.00254 * 2 1 3 5 5 O 1.34259 * 126.52552 * 299.99874 * 4 2 1 6 6 C 1.34047 * 108.22862 * 179.97438 * 5 4 2 7 7 N 1.29934 * 109.24231 * 359.76314 * 6 5 4 8 8 C 1.36061 * 108.47750 * 0.37835 * 7 6 5 9 9 C 1.47420 * 126.45217 * 179.88509 * 8 7 6 10 10 O 1.21610 * 120.00402 * 179.41595 * 9 8 7 11 11 N 1.34784 * 119.99760 * 359.68946 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72621 * 11 9 8 13 13 H 1.09001 * 109.71286 * 34.99724 * 12 11 9 14 14 C 1.53303 * 109.71237 * 274.39813 * 12 11 9 15 15 C 1.52620 * 108.50336 * 176.52713 * 14 12 11 16 16 C 1.52989 * 110.92985 * 62.21298 * 15 14 12 17 17 H 1.08993 * 112.43176 * 73.38567 * 16 15 14 18 18 C 1.55847 * 106.36710 * 198.10777 * 16 15 14 19 19 N 1.47625 * 104.46792 * 77.05582 * 18 16 15 20 20 C 1.36944 * 125.72279 * 204.86824 * 19 18 16 21 21 H 1.07993 * 119.99846 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00026 * 359.97438 * 20 19 18 23 23 N 1.31625 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00014 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46774 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46914 * 120.00070 * 24 22 20 27 27 H 1.48496 * 109.46945 * 240.00122 * 24 22 20 28 28 C 1.47422 * 108.54711 * 24.86921 * 19 18 16 29 29 C 1.53373 * 106.51604 * 359.32994 * 28 19 18 30 30 H 1.08997 * 108.95594 * 91.97595 * 29 28 19 31 31 C 1.50902 * 113.03101 * 212.45197 * 29 28 19 32 32 H 1.08998 * 109.47061 * 299.99612 * 1 2 3 33 33 H 1.09005 * 109.47243 * 59.99982 * 1 2 3 34 34 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47061 * 240.00388 * 2 1 3 36 36 H 1.09005 * 109.47221 * 300.00032 * 3 2 1 37 37 H 1.09002 * 109.47213 * 59.99906 * 3 2 1 38 38 H 1.09003 * 109.47158 * 179.97438 * 3 2 1 39 39 H 1.07997 * 125.37713 * 180.02562 * 6 5 4 40 40 H 0.97005 * 119.99846 * 359.72409 * 11 9 8 41 41 H 1.08999 * 109.63431 * 296.23642 * 14 12 11 42 42 H 1.09000 * 109.62629 * 56.82332 * 14 12 11 43 43 H 1.09006 * 109.18164 * 182.58033 * 15 14 12 44 44 H 1.08996 * 109.19190 * 301.83216 * 15 14 12 45 45 H 1.08997 * 110.43685 * 195.80505 * 18 16 15 46 46 H 1.09001 * 110.43396 * 318.30797 * 18 16 15 47 47 H 0.96994 * 120.00276 * 180.02562 * 23 22 20 48 48 H 1.09007 * 110.04400 * 240.05851 * 28 19 18 49 49 H 1.09003 * 110.08971 * 118.61740 * 28 19 18 50 50 H 1.08993 * 109.09962 * 305.34219 * 31 29 28 51 51 H 1.09004 * 109.02096 * 186.41513 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7902 -0.3679 2.5057 6 6 2.4123 -1.2488 3.3019 7 7 3.0274 -2.1281 2.5693 8 6 2.8174 -1.8217 1.2604 9 6 3.3372 -2.5584 0.0940 10 8 3.0665 -2.1849 -1.0312 11 7 4.1080 -3.6492 0.2748 12 6 4.6196 -4.3848 -0.8842 13 1 4.8433 -3.6883 -1.6923 14 6 3.5737 -5.4027 -1.3535 15 6 4.0977 -6.0909 -2.6109 16 6 5.3863 -6.8610 -2.3157 17 1 5.2050 -7.7724 -1.7462 18 6 6.0704 -7.1164 -3.6925 19 7 6.6840 -5.8209 -4.0455 20 6 6.9721 -5.3917 -5.3136 21 1 7.4234 -4.4225 -5.4661 22 6 6.6852 -6.2029 -6.4028 23 7 6.1356 -7.3844 -6.2169 24 14 7.0789 -5.6178 -8.1326 25 1 7.6885 -4.2650 -8.0708 26 1 8.0327 -6.5613 -8.7692 27 1 5.8292 -5.5621 -8.9328 28 6 6.9344 -5.0668 -2.8037 29 6 6.4320 -5.9454 -1.6513 30 1 7.2573 -6.5569 -1.2865 31 6 5.8864 -5.1457 -0.4938 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.1300 1.4426 0.0005 39 1 2.4003 -1.2328 4.3817 40 1 4.3240 -3.9471 1.1723 41 1 3.4079 -6.1443 -0.5721 42 1 2.6390 -4.8895 -1.5794 43 1 3.3425 -6.7847 -2.9805 44 1 4.2965 -5.3390 -3.3745 45 1 6.8354 -7.8873 -3.6002 46 1 5.3289 -7.4022 -4.4387 47 1 5.9354 -7.9513 -6.9780 48 1 6.3865 -4.1246 -2.8218 49 1 8.0016 -4.8760 -2.6903 50 1 6.6425 -4.4329 -0.1648 51 1 5.6556 -5.8230 0.3286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980207338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:37 Heat of formation + Delta-G solvation = -26.940842 kcal Electronic energy + Delta-G solvation = -31492.436905 eV Core-core repulsion = 27392.421882 eV Total energy + Delta-G solvation = -4100.015023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.47964 -41.36067 -40.12664 -37.15631 -36.57194 -35.82461 -34.90349 -33.29966 -32.23590 -30.97013 -30.34268 -28.15459 -27.68622 -26.89027 -25.15156 -24.33368 -23.67285 -22.81106 -21.84771 -21.54636 -21.37868 -19.88769 -19.11108 -18.59333 -17.80554 -17.56732 -17.25911 -16.80125 -16.34159 -16.04184 -15.85179 -15.70251 -15.50732 -15.29124 -14.96387 -14.81035 -14.66771 -14.14722 -14.01912 -13.78357 -13.70335 -13.30873 -13.13792 -13.07064 -12.93583 -12.74387 -12.69748 -12.52819 -12.40161 -12.27289 -12.22686 -12.15087 -12.10980 -11.79531 -11.77775 -11.71729 -11.28840 -11.15329 -10.93533 -10.85567 -10.70674 -10.18445 -9.88573 -8.83514 -7.75572 -5.18807 0.03321 1.06197 1.44432 1.45563 1.53499 1.55684 2.07802 2.21349 2.49544 3.09318 3.33101 3.44459 3.65275 3.69549 3.71638 3.77965 3.95020 4.04223 4.06959 4.16994 4.19607 4.24877 4.32250 4.51419 4.52841 4.56401 4.61434 4.66125 4.69121 4.72573 4.77583 4.83337 4.86048 4.93395 5.04826 5.06363 5.11323 5.14939 5.21327 5.22860 5.23146 5.28965 5.35929 5.46279 5.46926 5.51562 5.57085 5.74728 5.88229 6.30031 6.35293 6.60997 7.11989 7.13560 7.80882 8.45538 9.25769 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002554 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.967040 B =10961.784136 C =12024.148652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C -0.141 4.141 4 C 0.054 3.946 5 O -0.195 6.195 6 C 0.195 3.805 7 N -0.488 5.488 8 C -0.101 4.101 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.693 5.693 12 C 0.151 3.849 13 H 0.060 0.940 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.097 4.097 17 H 0.104 0.896 18 C 0.157 3.843 19 N -0.622 5.622 20 C -0.235 4.235 21 H 0.074 0.926 22 C -0.067 4.067 23 N -0.946 5.946 24 Si 0.976 3.024 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.134 3.866 29 C -0.077 4.077 30 H 0.081 0.919 31 C -0.097 4.097 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.306 0.694 40 H 0.417 0.583 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.033 0.967 45 H -0.017 1.017 46 H 0.074 0.926 47 H 0.246 0.754 48 H 0.017 0.983 49 H 0.019 0.981 50 H 0.077 0.923 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 13.081 24.561 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 C -0.198 4.198 4 C -0.004 4.004 5 O -0.081 6.081 6 C -0.033 4.033 7 N -0.217 5.217 8 C -0.219 4.219 9 C 0.381 3.619 10 O -0.446 6.446 11 N -0.343 5.343 12 C 0.047 3.953 13 H 0.078 0.922 14 C -0.148 4.148 15 C -0.131 4.131 16 C -0.116 4.116 17 H 0.122 0.878 18 C 0.032 3.968 19 N -0.348 5.348 20 C -0.364 4.364 21 H 0.092 0.908 22 C -0.259 4.259 23 N -0.596 5.596 24 Si 0.805 3.195 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.009 3.991 29 C -0.096 4.096 30 H 0.099 0.901 31 C -0.135 4.135 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.321 0.679 40 H 0.254 0.746 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.001 0.999 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.096 0.904 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.528 12.782 23.794 28.989 hybrid contribution 0.272 0.306 -1.274 1.338 sum -10.256 13.088 22.520 27.994 Atomic orbital electron populations 1.21823 0.91656 1.02324 1.03949 1.20341 0.97978 0.97059 0.90112 1.21826 1.00922 0.93092 1.03958 1.23926 0.96390 0.95027 0.85013 1.84388 1.59103 1.49096 1.15496 1.29225 0.90509 0.83270 1.00294 1.70695 1.23007 1.27405 1.00576 1.21324 1.08014 1.00274 0.92302 1.17070 0.78168 0.80180 0.86446 1.90763 1.60105 1.68795 1.24898 1.45721 1.50485 1.27275 1.10838 1.20914 0.94161 0.92819 0.87455 0.92225 1.21767 0.97364 0.97834 0.97884 1.21206 0.96421 0.98612 0.96875 1.22504 0.94253 0.98332 0.96528 0.87784 1.22040 0.94979 0.85799 0.93961 1.44864 1.72010 1.16823 1.01091 1.19441 1.33168 1.00555 0.83243 0.90826 1.25563 1.02029 0.96853 1.01473 1.70047 1.49668 1.10881 1.29040 0.85038 0.76996 0.77570 0.79933 1.19467 1.21730 1.21855 1.21407 0.96666 0.94506 0.86502 1.21173 0.98222 0.96482 0.93761 0.90061 1.21127 0.95356 0.99137 0.97873 0.90932 0.89847 0.93233 0.87392 0.89841 0.90921 0.93287 0.67884 0.74570 0.89483 0.93476 0.92665 0.94815 0.99866 0.90799 0.94427 0.96490 0.96275 0.90395 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 71.98 0.66 -1.49 16 2 C -0.04 -0.71 3.24 -11.54 -0.04 -0.75 16 3 C -0.14 -2.17 9.17 71.98 0.66 -1.51 16 4 C 0.05 1.13 5.95 25.18 0.15 1.28 16 5 O -0.19 -3.00 10.73 0.38 0.00 -3.00 16 6 C 0.20 2.21 13.19 130.52 1.72 3.93 16 7 N -0.49 -9.31 11.06 -305.16 -3.37 -12.69 16 8 C -0.10 -2.45 6.99 40.41 0.28 -2.16 16 9 C 0.59 17.50 7.79 86.66 0.68 18.17 16 10 O -0.57 -20.41 14.13 -4.06 -0.06 -20.47 16 11 N -0.69 -17.66 5.09 -445.56 -2.27 -19.93 16 12 C 0.15 4.41 2.31 45.04 0.10 4.51 16 13 H 0.06 2.23 6.20 -2.39 -0.01 2.22 16 14 C -0.11 -3.32 5.53 30.57 0.17 -3.15 16 15 C -0.09 -3.46 4.81 30.46 0.15 -3.32 16 16 C -0.10 -3.56 3.72 -9.46 -0.04 -3.59 16 17 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 18 C 0.16 7.89 5.18 87.15 0.45 8.34 16 19 N -0.62 -33.23 2.93 -690.42 -2.02 -35.25 16 20 C -0.23 -13.78 10.28 84.03 0.86 -12.92 16 21 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 23 N -0.95 -57.85 10.09 21.65 0.22 -57.63 16 24 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 C 0.13 5.78 6.24 86.33 0.54 6.32 16 29 C -0.08 -2.55 2.69 -10.99 -0.03 -2.58 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 C -0.10 -2.42 4.83 29.86 0.14 -2.28 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 2.80 5.52 -2.39 -0.01 2.79 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.31 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.42 8.54 8.33 -92.70 -0.77 7.77 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.03 1.55 7.17 -2.39 -0.02 1.53 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.07 4.25 5.68 -2.39 -0.01 4.23 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.02 0.76 6.50 -2.38 -0.02 0.75 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -76.97 397.23 1.62 -75.35 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.17 Total: 18.67 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.93 Total: 5.35 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -7.45 Total: -125.50 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.97 1.62 -75.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980207338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.408 kcal (2) G-P(sol) polarization free energy of solvation -76.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds