Wall clock time and date at job start Wed Apr 1 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 C 1.50699 * 109.46990 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.38263 * 89.99578 * 4 3 2 6 6 C 1.36065 * 108.48142 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44898 * 179.73725 * 6 5 4 8 8 O 1.21608 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00077 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00312 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.02905 * 35.00379 * 10 9 7 12 12 C 1.52530 * 109.04773 * 276.04102 * 10 9 7 13 13 C 1.53812 * 111.70890 * 293.49311 * 12 10 9 14 14 C 1.51626 * 107.02863 * 302.45540 * 13 12 10 15 15 H 1.09002 * 110.50861 * 304.77912 * 14 13 12 16 16 C 1.53064 * 116.66555 * 176.22161 * 14 13 12 17 17 N 1.48652 * 103.44517 * 204.13402 * 16 14 13 18 18 C 1.36938 * 125.78564 * 204.35461 * 17 16 14 19 19 H 1.08002 * 120.00120 * 170.31617 * 18 17 16 20 20 C 1.38809 * 119.99979 * 350.32039 * 18 17 16 21 21 N 1.31622 * 120.00145 * 350.27810 * 20 18 17 22 22 Si 1.86806 * 120.00447 * 170.28125 * 20 18 17 23 23 H 1.48500 * 109.46838 * 94.15671 * 22 20 18 24 24 H 1.48497 * 109.47195 * 214.15913 * 22 20 18 25 25 H 1.48502 * 109.46722 * 334.16225 * 22 20 18 26 26 C 1.48241 * 108.43377 * 24.37781 * 17 16 14 27 27 C 1.52323 * 105.86271 * 3.18507 * 26 17 16 28 28 H 1.09008 * 109.87498 * 87.66170 * 27 26 17 29 29 C 1.51284 * 117.48334 * 214.68352 * 27 26 17 30 30 C 1.36092 * 107.10250 * 0.02562 * 6 5 4 31 31 O 1.34055 * 125.37812 * 270.00179 * 4 3 2 32 32 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47348 * 300.00380 * 1 2 3 34 34 H 1.08993 * 109.46904 * 60.00369 * 1 2 3 35 35 H 1.08993 * 109.47212 * 239.99308 * 2 1 3 36 36 H 1.08999 * 109.46511 * 119.99470 * 2 1 3 37 37 H 1.09001 * 109.47401 * 59.99652 * 3 2 1 38 38 H 1.08999 * 109.47076 * 299.99123 * 3 2 1 39 39 H 0.97006 * 119.99525 * 0.02562 * 9 7 6 40 40 H 1.09002 * 109.03054 * 54.05941 * 12 10 9 41 41 H 1.08991 * 109.03500 * 172.99092 * 12 10 9 42 42 H 1.09001 * 109.94330 * 61.83421 * 13 12 10 43 43 H 1.08994 * 109.94561 * 183.07495 * 13 12 10 44 44 H 1.08996 * 110.62954 * 322.62844 * 16 14 13 45 45 H 1.09002 * 110.62299 * 85.64620 * 16 14 13 46 46 H 0.96992 * 120.00308 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.17133 * 244.08528 * 26 17 16 48 48 H 1.09000 * 110.17403 * 122.28991 * 26 17 16 49 49 H 1.09000 * 109.95559 * 59.40074 * 29 27 26 50 50 H 1.08996 * 109.84914 * 298.20934 * 29 27 26 51 51 H 1.08001 * 126.52914 * 179.97438 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2998 1.4423 -1.0585 6 6 5.6015 1.4429 -0.6623 7 6 6.7846 1.4375 -1.5418 8 8 7.9009 1.4383 -1.0593 9 7 6.6291 1.4306 -2.8805 10 6 7.8048 1.4258 -3.7545 11 1 8.5935 0.8369 -3.2861 12 6 8.2952 2.8585 -3.9372 13 6 7.2801 3.7124 -4.7159 14 6 7.0521 3.0259 -6.0485 15 1 7.9987 2.8760 -6.5678 16 6 6.0021 3.6490 -6.9715 17 7 5.5802 2.5127 -7.8320 18 6 5.0360 2.6155 -9.0843 19 1 4.9070 1.7316 -9.6914 20 6 4.6501 3.8559 -9.5736 21 7 4.6268 4.9008 -8.7736 22 14 4.1639 4.0423 -11.3677 23 1 2.6907 3.9081 -11.4977 24 1 4.5844 5.3794 -11.8581 25 1 4.8301 2.9875 -12.1732 26 6 5.8481 1.2491 -7.1044 27 6 6.3745 1.6605 -5.7355 28 1 5.5420 1.8085 -5.0475 29 6 7.4280 0.7807 -5.0994 30 6 5.6057 1.4430 0.6986 31 8 4.3226 1.4426 1.0940 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8932 -0.5138 0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6768 1.9563 -0.8901 39 1 5.7387 1.4296 -3.2653 40 1 8.4580 3.3062 -2.9567 41 1 9.2388 2.8445 -4.4825 42 1 6.3426 3.7718 -4.1631 43 1 7.6818 4.7127 -4.8770 44 1 5.1587 4.0269 -6.3937 45 1 6.4431 4.4435 -7.5735 46 1 4.3568 5.7674 -9.1154 47 1 6.5978 0.6618 -7.6346 48 1 4.9277 0.6752 -6.9964 49 1 8.3053 0.7255 -5.7440 50 1 7.0247 -0.2181 -4.9325 51 1 6.4756 1.4431 1.3388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980208890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:12 Heat of formation + Delta-G solvation = -6.412728 kcal Electronic energy + Delta-G solvation = -31079.743242 eV Core-core repulsion = 26980.618385 eV Total energy + Delta-G solvation = -4099.124857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.68040 -40.29104 -38.64920 -35.83600 -35.62136 -34.93324 -33.14509 -31.82481 -31.05371 -30.53263 -28.87021 -27.48832 -26.33666 -25.15393 -24.26142 -22.66051 -21.95269 -21.59324 -20.74451 -20.54955 -19.79045 -18.93679 -18.34960 -17.04069 -16.72397 -16.66023 -15.92992 -15.51039 -15.20981 -15.10617 -14.80522 -14.45638 -14.16951 -13.92915 -13.85247 -13.69312 -13.55837 -13.21648 -12.66048 -12.57843 -12.37098 -12.21773 -12.09658 -11.91543 -11.81226 -11.42198 -11.38683 -11.19560 -11.16251 -11.11629 -11.02001 -10.76988 -10.71634 -10.58611 -10.21635 -9.98906 -9.91597 -9.80886 -9.51131 -9.34068 -9.25516 -8.89275 -8.53914 -6.75243 -5.69534 -3.01085 0.88493 1.78535 2.29426 3.05854 3.21239 3.41957 3.47682 3.49808 3.60104 4.44164 4.51713 4.52436 4.52854 4.67166 4.83552 4.88239 4.92464 5.07488 5.08912 5.21542 5.31158 5.34755 5.35381 5.38114 5.39846 5.53736 5.61142 5.67763 5.69562 5.72247 5.75337 5.84168 5.86296 5.87629 6.04214 6.18295 6.21572 6.27560 6.29537 6.40893 6.50913 6.61206 6.67213 6.71723 6.86594 7.07556 7.19635 7.55906 7.56425 7.64490 7.82847 8.12390 8.28038 9.22388 9.84943 10.54749 11.43743 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.002769 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.473249 B =10110.557152 C =12047.292909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.025 4.025 4 C 0.200 3.800 5 N -0.455 5.455 6 C -0.069 4.069 7 C 0.601 3.399 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.126 4.126 13 C -0.101 4.101 14 C -0.116 4.116 15 H 0.070 0.930 16 C 0.185 3.815 17 N -0.606 5.606 18 C -0.226 4.226 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.144 3.856 27 C -0.107 4.107 28 H 0.066 0.934 29 C -0.109 4.109 30 C 0.007 3.993 31 O -0.197 6.197 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.251 0.749 47 H 0.023 0.977 48 H 0.024 0.976 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -8.318 21.464 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.064 4.064 4 C -0.009 4.009 5 N -0.185 5.185 6 C -0.189 4.189 7 C 0.386 3.614 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.046 3.954 11 H 0.103 0.897 12 C -0.165 4.165 13 C -0.139 4.139 14 C -0.135 4.135 15 H 0.088 0.912 16 C 0.061 3.939 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.018 3.982 27 C -0.126 4.126 28 H 0.085 0.915 29 C -0.147 4.147 30 C -0.066 4.066 31 O -0.083 6.083 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.248 0.752 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.042 0.958 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.684 -8.161 21.013 22.552 hybrid contribution -0.419 0.220 -0.409 0.625 sum -1.103 -7.941 20.604 22.109 Atomic orbital electron populations 1.21756 0.94443 1.02390 1.02357 1.21546 0.96708 0.94532 1.03244 1.20274 0.80603 0.99779 1.05694 1.26361 0.96397 0.99937 0.78209 1.70813 1.00623 1.17218 1.29873 1.21870 0.92262 1.11703 0.93068 1.16739 0.86041 0.76439 0.82142 1.90802 1.24260 1.51612 1.75529 1.46076 1.11330 1.72760 1.04982 1.21138 0.87271 0.96963 0.90039 0.89693 1.21924 0.99301 0.94653 1.00607 1.21275 0.98700 0.98280 0.95607 1.22389 0.99769 0.95836 0.95553 0.91199 1.21095 0.92346 0.90313 0.90197 1.45099 1.73163 0.99623 1.15415 1.19026 1.33471 0.93690 0.89244 0.90757 1.24795 1.01293 0.96217 0.98210 1.69960 1.53434 0.99814 1.33337 0.86160 0.78090 0.77073 0.84786 1.21705 1.21684 1.20679 1.20973 0.96743 0.90343 0.90113 1.21749 0.96863 0.96799 0.97225 0.91546 1.21571 0.99958 0.98529 0.94673 1.25261 0.84814 1.00852 0.95721 1.84390 1.16681 1.69254 1.38002 0.92118 0.92418 0.92004 0.90801 0.91515 0.88668 0.87090 0.75180 0.91962 0.91173 0.92178 0.91944 0.95605 0.91506 0.93829 0.95961 0.95817 0.90014 0.91518 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.03 -0.17 5.84 -27.88 -0.16 -0.34 16 4 C 0.20 2.04 7.56 -13.08 -0.10 1.95 16 5 N -0.46 -5.77 11.06 -7.65 -0.08 -5.85 16 6 C -0.07 -0.88 6.99 -83.02 -0.58 -1.46 16 7 C 0.60 8.54 7.72 -12.52 -0.10 8.45 16 8 O -0.54 -8.70 16.54 5.27 0.09 -8.62 16 9 N -0.70 -9.54 4.66 -54.69 -0.25 -9.80 16 10 C 0.15 1.99 2.70 -67.73 -0.18 1.81 16 11 H 0.09 1.13 7.55 -51.93 -0.39 0.74 16 12 C -0.13 -1.74 5.42 -26.55 -0.14 -1.88 16 13 C -0.10 -1.59 5.57 -27.00 -0.15 -1.74 16 14 C -0.12 -2.13 2.50 -89.89 -0.22 -2.36 16 15 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 16 C 0.18 4.46 5.05 -2.82 -0.01 4.45 16 17 N -0.61 -15.61 3.45 -170.42 -0.59 -16.19 16 18 C -0.23 -6.37 10.26 -15.06 -0.15 -6.53 16 19 H 0.07 2.04 7.85 -52.49 -0.41 1.62 16 20 C -0.01 -0.25 5.41 -17.43 -0.09 -0.34 16 21 N -0.92 -27.18 10.71 55.49 0.59 -26.59 16 22 Si 0.91 22.25 29.57 -169.99 -5.03 17.22 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.14 2.98 6.98 -3.43 -0.02 2.96 16 27 C -0.11 -1.82 2.23 -90.44 -0.20 -2.02 16 28 H 0.07 1.15 6.13 -51.92 -0.32 0.83 16 29 C -0.11 -1.47 5.36 -27.16 -0.15 -1.62 16 30 C 0.01 0.07 11.95 29.96 0.36 0.43 16 31 O -0.20 -1.96 10.73 6.48 0.07 -1.89 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.41 5.71 6.55 -40.82 -0.27 5.44 16 40 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.07 1.81 6.96 -51.93 -0.36 1.44 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.02 0.45 8.08 -51.93 -0.42 0.04 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.23 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -33.07 404.52 -9.27 -42.35 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.46 Total: 2.83 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.71 Total: 0.44 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.33 Total: -58.44 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.16 Total: -10.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.07 -9.27 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980208890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.933 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds