Wall clock time and date at job start Wed Apr 1 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 C 1.50699 * 109.46990 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.38263 * 89.99578 * 4 3 2 6 6 C 1.36065 * 108.48142 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44898 * 179.73725 * 6 5 4 8 8 O 1.21608 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00077 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00312 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.02905 * 35.00379 * 10 9 7 12 12 C 1.52530 * 109.04773 * 276.04102 * 10 9 7 13 13 C 1.53812 * 111.70890 * 293.49311 * 12 10 9 14 14 C 1.51626 * 107.02863 * 302.45540 * 13 12 10 15 15 H 1.09002 * 110.50861 * 304.77912 * 14 13 12 16 16 C 1.53064 * 116.66555 * 176.22161 * 14 13 12 17 17 N 1.48652 * 103.44517 * 204.13402 * 16 14 13 18 18 C 1.36938 * 125.78564 * 204.35461 * 17 16 14 19 19 H 1.08002 * 120.00120 * 170.31617 * 18 17 16 20 20 C 1.38809 * 119.99979 * 350.32039 * 18 17 16 21 21 N 1.31622 * 120.00145 * 350.27810 * 20 18 17 22 22 Si 1.86806 * 120.00447 * 170.28125 * 20 18 17 23 23 H 1.48500 * 109.46838 * 94.15671 * 22 20 18 24 24 H 1.48497 * 109.47195 * 214.15913 * 22 20 18 25 25 H 1.48502 * 109.46722 * 334.16225 * 22 20 18 26 26 C 1.48241 * 108.43377 * 24.37781 * 17 16 14 27 27 C 1.52323 * 105.86271 * 3.18507 * 26 17 16 28 28 H 1.09008 * 109.87498 * 87.66170 * 27 26 17 29 29 C 1.51284 * 117.48334 * 214.68352 * 27 26 17 30 30 C 1.36092 * 107.10250 * 0.02562 * 6 5 4 31 31 O 1.34055 * 125.37812 * 270.00179 * 4 3 2 32 32 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47348 * 300.00380 * 1 2 3 34 34 H 1.08993 * 109.46904 * 60.00369 * 1 2 3 35 35 H 1.08993 * 109.47212 * 239.99308 * 2 1 3 36 36 H 1.08999 * 109.46511 * 119.99470 * 2 1 3 37 37 H 1.09001 * 109.47401 * 59.99652 * 3 2 1 38 38 H 1.08999 * 109.47076 * 299.99123 * 3 2 1 39 39 H 0.97006 * 119.99525 * 0.02562 * 9 7 6 40 40 H 1.09002 * 109.03054 * 54.05941 * 12 10 9 41 41 H 1.08991 * 109.03500 * 172.99092 * 12 10 9 42 42 H 1.09001 * 109.94330 * 61.83421 * 13 12 10 43 43 H 1.08994 * 109.94561 * 183.07495 * 13 12 10 44 44 H 1.08996 * 110.62954 * 322.62844 * 16 14 13 45 45 H 1.09002 * 110.62299 * 85.64620 * 16 14 13 46 46 H 0.96992 * 120.00308 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.17133 * 244.08528 * 26 17 16 48 48 H 1.09000 * 110.17403 * 122.28991 * 26 17 16 49 49 H 1.09000 * 109.95559 * 59.40074 * 29 27 26 50 50 H 1.08996 * 109.84914 * 298.20934 * 29 27 26 51 51 H 1.08001 * 126.52914 * 179.97438 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2998 1.4423 -1.0585 6 6 5.6015 1.4429 -0.6623 7 6 6.7846 1.4375 -1.5418 8 8 7.9009 1.4383 -1.0593 9 7 6.6291 1.4306 -2.8805 10 6 7.8048 1.4258 -3.7545 11 1 8.5935 0.8369 -3.2861 12 6 8.2952 2.8585 -3.9372 13 6 7.2801 3.7124 -4.7159 14 6 7.0521 3.0259 -6.0485 15 1 7.9987 2.8760 -6.5678 16 6 6.0021 3.6490 -6.9715 17 7 5.5802 2.5127 -7.8320 18 6 5.0360 2.6155 -9.0843 19 1 4.9070 1.7316 -9.6914 20 6 4.6501 3.8559 -9.5736 21 7 4.6268 4.9008 -8.7736 22 14 4.1639 4.0423 -11.3677 23 1 2.6907 3.9081 -11.4977 24 1 4.5844 5.3794 -11.8581 25 1 4.8301 2.9875 -12.1732 26 6 5.8481 1.2491 -7.1044 27 6 6.3745 1.6605 -5.7355 28 1 5.5420 1.8085 -5.0475 29 6 7.4280 0.7807 -5.0994 30 6 5.6057 1.4430 0.6986 31 8 4.3226 1.4426 1.0940 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8932 -0.5138 0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6768 1.9563 -0.8901 39 1 5.7387 1.4296 -3.2653 40 1 8.4580 3.3062 -2.9567 41 1 9.2388 2.8445 -4.4825 42 1 6.3426 3.7718 -4.1631 43 1 7.6818 4.7127 -4.8770 44 1 5.1587 4.0269 -6.3937 45 1 6.4431 4.4435 -7.5735 46 1 4.3568 5.7674 -9.1154 47 1 6.5978 0.6618 -7.6346 48 1 4.9277 0.6752 -6.9964 49 1 8.3053 0.7255 -5.7440 50 1 7.0247 -0.2181 -4.9325 51 1 6.4756 1.4431 1.3388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980208890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:11 Heat of formation + Delta-G solvation = -28.476128 kcal Electronic energy + Delta-G solvation = -31080.699983 eV Core-core repulsion = 26980.618385 eV Total energy + Delta-G solvation = -4100.081598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.49158 -41.52528 -39.96690 -37.15092 -36.43199 -35.72675 -34.72269 -33.46915 -32.12545 -31.63037 -30.51223 -28.17009 -27.87564 -26.92509 -25.29743 -23.56463 -23.27659 -22.40711 -21.90132 -21.58992 -21.51978 -20.18878 -19.30561 -18.73882 -17.85637 -17.55654 -17.14224 -16.75968 -16.28893 -16.16198 -15.87571 -15.70906 -15.54869 -15.34685 -14.97663 -14.76479 -14.63264 -14.25326 -14.19514 -13.92029 -13.50603 -13.39826 -13.05144 -12.99003 -12.90072 -12.75369 -12.66948 -12.56713 -12.46061 -12.40433 -12.10213 -11.97725 -11.91081 -11.88362 -11.75486 -11.63297 -11.44237 -11.29938 -11.04233 -10.85465 -10.62166 -10.19787 -9.93920 -8.84705 -7.86219 -5.20125 0.04978 0.91466 1.45591 1.47190 1.54670 1.56894 2.07792 2.21161 2.50023 2.82076 3.31932 3.53901 3.60455 3.64544 3.74551 3.76244 3.83420 4.02272 4.07723 4.11039 4.28210 4.33203 4.42691 4.47064 4.51008 4.58755 4.58943 4.69046 4.70903 4.74888 4.76921 4.84371 4.90618 4.91997 4.98056 5.00165 5.06098 5.09761 5.16760 5.23397 5.26125 5.26380 5.34214 5.44239 5.48287 5.50483 5.55335 5.69392 5.78051 6.19434 6.28950 6.56652 7.05724 7.07626 7.75713 8.45284 9.25935 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.002769 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.473249 B =10110.557152 C =12047.292909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.025 4.025 4 C 0.203 3.797 5 N -0.486 5.486 6 C -0.103 4.103 7 C 0.602 3.398 8 O -0.565 6.565 9 N -0.700 5.700 10 C 0.153 3.847 11 H 0.096 0.904 12 C -0.117 4.117 13 C -0.093 4.093 14 C -0.103 4.103 15 H 0.076 0.924 16 C 0.193 3.807 17 N -0.630 5.630 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.949 5.949 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.138 3.862 27 C -0.090 4.090 28 H 0.061 0.939 29 C -0.097 4.097 30 C 0.027 3.973 31 O -0.193 6.193 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.409 0.591 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.062 0.938 44 H -0.008 1.008 45 H 0.029 0.971 46 H 0.247 0.753 47 H 0.035 0.965 48 H 0.021 0.979 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -9.711 22.786 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.063 4.063 4 C -0.007 4.007 5 N -0.216 5.216 6 C -0.222 4.222 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.351 5.351 10 C 0.049 3.951 11 H 0.113 0.887 12 C -0.156 4.156 13 C -0.131 4.131 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.068 3.932 17 N -0.357 5.357 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.014 3.986 27 C -0.109 4.109 28 H 0.079 0.921 29 C -0.135 4.135 30 C -0.047 4.047 31 O -0.079 6.079 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.010 0.990 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.114 0.886 50 H 0.102 0.898 51 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.220 -9.589 22.336 24.308 hybrid contribution -0.632 0.638 -0.790 1.196 sum -0.852 -8.951 21.546 23.347 Atomic orbital electron populations 1.21742 0.93411 1.02707 1.02839 1.21497 0.97490 0.93956 1.02609 1.20482 0.78539 1.00401 1.06866 1.26987 0.97406 0.98492 0.77769 1.70776 1.00997 1.18648 1.31193 1.21839 0.92029 1.14398 0.93977 1.16904 0.86235 0.75768 0.82262 1.90778 1.25082 1.52834 1.75842 1.46099 1.11283 1.72627 1.05080 1.21138 0.87434 0.96651 0.89830 0.88652 1.21852 0.99121 0.94401 1.00194 1.21193 0.99051 0.98661 0.94185 1.22178 0.98124 0.96332 0.95592 0.90602 1.20836 0.92560 0.89650 0.90133 1.45448 1.73016 1.01797 1.15406 1.19423 1.33089 0.93953 0.90623 0.90381 1.25648 1.01957 0.95986 1.02353 1.70172 1.54601 0.99974 1.35013 0.85100 0.77682 0.76899 0.79854 1.21360 1.22010 1.19334 1.21160 0.97065 0.88578 0.91791 1.21620 0.97541 0.96465 0.95292 0.92074 1.21523 0.99114 0.98426 0.94483 1.25803 0.85502 0.98164 0.95199 1.84428 1.16636 1.69046 1.37811 0.91910 0.91111 0.92349 0.92525 0.91067 0.86169 0.87204 0.75442 0.92121 0.89443 0.93255 0.91942 0.98979 0.95299 0.94434 0.94698 0.96077 0.88565 0.89825 0.72573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 3 C -0.03 -0.31 5.84 29.85 0.17 -0.13 16 4 C 0.20 3.93 7.56 88.39 0.67 4.60 16 5 N -0.49 -12.13 11.06 -293.03 -3.24 -15.37 16 6 C -0.10 -2.55 6.99 40.41 0.28 -2.27 16 7 C 0.60 16.49 7.72 86.66 0.67 17.16 16 8 O -0.57 -17.28 16.54 -4.06 -0.07 -17.35 16 9 N -0.70 -18.32 4.66 -445.19 -2.07 -20.39 16 10 C 0.15 3.73 2.70 45.12 0.12 3.85 16 11 H 0.10 2.24 7.55 -2.38 -0.02 2.23 16 12 C -0.12 -2.99 5.42 30.71 0.17 -2.83 16 13 C -0.09 -2.89 5.57 30.42 0.17 -2.72 16 14 C -0.10 -3.77 2.50 -10.32 -0.03 -3.79 16 15 H 0.08 2.72 8.01 -2.39 -0.02 2.70 16 16 C 0.19 9.69 5.05 85.99 0.43 10.13 16 17 N -0.63 -33.14 3.45 -693.10 -2.39 -35.53 16 18 C -0.24 -13.88 10.26 84.03 0.86 -13.02 16 19 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 20 C -0.07 -3.85 5.41 84.86 0.46 -3.39 16 21 N -0.95 -58.33 10.71 21.65 0.23 -58.10 16 22 Si 0.98 46.50 29.57 68.60 2.03 48.53 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.14 5.69 6.98 85.82 0.60 6.29 16 27 C -0.09 -2.97 2.23 -10.68 -0.02 -2.99 16 28 H 0.06 2.10 6.13 -2.38 -0.01 2.08 16 29 C -0.10 -2.37 5.36 30.32 0.16 -2.21 16 30 C 0.03 0.51 11.95 67.32 0.80 1.31 16 31 O -0.19 -3.49 10.73 0.28 0.00 -3.48 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.41 11.16 6.55 -92.70 -0.61 10.55 16 40 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.64 7.84 -2.39 -0.02 1.62 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H -0.01 -0.44 8.11 -2.39 -0.02 -0.46 16 45 H 0.03 1.64 6.96 -2.39 -0.02 1.62 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 48 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.10 2.15 8.03 -2.39 -0.02 2.13 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.26 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -73.73 404.52 1.23 -72.51 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.32 Total: 20.95 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.42 Total: 8.23 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -7.47 Total: -129.39 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -73.73 1.23 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980208890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.031 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds