Wall clock time and date at job start Wed Apr 1 2020 04:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47119 * 2 1 4 4 N 1.30613 * 125.42181 * 89.97179 * 3 2 1 5 5 C 1.33693 * 108.99685 * 179.75107 * 4 3 2 6 6 C 1.50699 * 126.27576 * 180.27103 * 5 4 3 7 7 C 1.36349 * 107.44883 * 0.43764 * 5 4 3 8 8 C 1.46718 * 126.64131 * 179.83956 * 7 5 4 9 9 O 1.21688 * 120.00109 * 359.70857 * 8 7 5 10 10 N 1.34780 * 119.99897 * 179.70974 * 8 7 5 11 11 C 1.46504 * 119.99902 * 179.97438 * 10 8 7 12 12 H 1.09008 * 108.76973 * 327.78191 * 11 10 8 13 13 C 1.51861 * 108.71228 * 209.45551 * 11 10 8 14 14 C 1.52244 * 110.36564 * 292.70688 * 13 11 10 15 15 C 1.52932 * 110.27856 * 298.06401 * 14 13 11 16 16 H 1.08998 * 112.23802 * 291.30668 * 15 14 13 17 17 C 1.55040 * 107.19930 * 167.88346 * 15 14 13 18 18 N 1.47116 * 107.09170 * 266.49574 * 17 15 14 19 19 C 1.36943 * 125.64204 * 180.14671 * 18 17 15 20 20 H 1.07997 * 119.99929 * 169.90948 * 19 18 17 21 21 C 1.38809 * 119.99639 * 349.91017 * 19 18 17 22 22 N 1.31621 * 119.99672 * 152.50932 * 21 19 18 23 23 Si 1.86797 * 120.00296 * 332.50656 * 21 19 18 24 24 H 1.48500 * 109.46905 * 85.34255 * 23 21 19 25 25 H 1.48496 * 109.47219 * 325.34127 * 23 21 19 26 26 H 1.48498 * 109.47385 * 205.34004 * 23 21 19 27 27 C 1.47687 * 108.71670 * 0.41409 * 18 17 15 28 28 C 1.53510 * 110.52958 * 57.03526 * 15 14 13 29 29 H 1.09001 * 108.58155 * 192.07118 * 28 15 14 30 30 C 1.49575 * 115.62919 * 314.51375 * 28 15 14 31 31 O 1.33665 * 125.42111 * 270.00251 * 3 2 1 32 32 H 1.09003 * 109.47127 * 60.00137 * 1 2 3 33 33 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47362 * 299.99755 * 1 2 3 35 35 H 1.09004 * 109.47362 * 240.00245 * 2 1 3 36 36 H 1.08991 * 109.47483 * 119.99634 * 2 1 3 37 37 H 1.09002 * 109.47118 * 270.19100 * 6 5 4 38 38 H 1.09000 * 109.47148 * 30.19578 * 6 5 4 39 39 H 1.09002 * 109.47110 * 150.19348 * 6 5 4 40 40 H 0.96994 * 119.99898 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.31877 * 52.97640 * 13 11 10 42 42 H 1.08999 * 109.32147 * 172.43200 * 13 11 10 43 43 H 1.08996 * 109.33660 * 177.81485 * 14 13 11 44 44 H 1.09003 * 109.33728 * 58.30556 * 14 13 11 45 45 H 1.09004 * 109.91061 * 147.13387 * 17 15 14 46 46 H 1.08998 * 110.06826 * 25.95165 * 17 15 14 47 47 H 0.96999 * 120.00315 * 5.08367 * 22 21 19 48 48 H 1.08998 * 110.45381 * 95.26471 * 27 18 17 49 49 H 1.09000 * 110.45132 * 217.82335 * 27 18 17 50 50 H 1.09001 * 108.08163 * 160.41321 * 30 28 15 51 51 H 1.09008 * 108.07190 * 276.95076 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2842 2.1348 1.0644 5 6 2.7170 3.3419 0.6864 6 6 3.1234 4.4697 1.5996 7 6 2.7197 3.3668 -0.6769 8 6 3.1171 4.4914 -1.5313 9 8 3.4865 5.5364 -1.0289 10 7 3.0729 4.3671 -2.8726 11 6 3.4692 5.4902 -3.7258 12 1 3.2146 6.4217 -3.2201 13 6 2.6911 5.4114 -5.0275 14 6 3.1221 4.1912 -5.8295 15 6 4.6027 4.2950 -6.1979 16 1 4.7933 5.0882 -6.9209 17 6 5.0415 2.9061 -6.7291 18 7 5.5947 2.1616 -5.5872 19 6 6.0982 0.8889 -5.6329 20 1 6.6289 0.4873 -4.7823 21 6 5.9264 0.1151 -6.7724 22 7 6.7987 -0.8256 -7.0668 23 14 4.4572 0.4087 -7.8880 24 1 4.7769 1.4912 -8.8529 25 1 3.2848 0.8066 -7.0682 26 1 4.1420 -0.8385 -8.6300 27 6 5.5113 3.0113 -4.3821 28 6 5.4619 4.4516 -4.9355 29 1 6.4706 4.7365 -5.2349 30 6 4.9622 5.4411 -3.9313 31 8 2.2905 2.1513 -1.0893 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8899 37 1 2.2534 5.0869 1.8240 38 1 3.5269 4.0600 2.5255 39 1 3.8837 5.0779 1.1096 40 1 2.7781 3.5343 -3.2731 41 1 1.6259 5.3403 -4.8072 42 1 2.8761 6.3118 -5.6134 43 1 2.5269 4.1294 -6.7405 44 1 2.9606 3.2925 -5.2341 45 1 5.8044 3.0269 -7.4982 46 1 4.1828 2.3739 -7.1384 47 1 7.5201 -1.0280 -6.4508 48 1 4.6059 2.7856 -3.8188 49 1 6.3940 2.8740 -3.7575 50 1 5.4285 5.2149 -2.9724 51 1 5.2940 6.4327 -4.2397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980220914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:02 Heat of formation + Delta-G solvation = 0.979550 kcal Electronic energy + Delta-G solvation = -32390.693609 eV Core-core repulsion = 28291.889306 eV Total energy + Delta-G solvation = -4098.804304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.58428 -40.55598 -38.86764 -36.03097 -35.41021 -34.45408 -33.33823 -32.01454 -31.48641 -30.87164 -29.48920 -27.82748 -26.92053 -25.22297 -24.50667 -22.45427 -22.36705 -21.67829 -21.17133 -20.79481 -20.33870 -18.50125 -18.28211 -17.37727 -17.13530 -16.19238 -15.94060 -15.71738 -15.10001 -15.06565 -14.80005 -14.43011 -14.13875 -14.09557 -13.76000 -13.43999 -13.37669 -13.28241 -13.06545 -12.92050 -12.84274 -12.64380 -12.43186 -12.04168 -11.93155 -11.86842 -11.63233 -11.54065 -11.35163 -11.12936 -10.99741 -10.99120 -10.83666 -10.58840 -10.30693 -10.16510 -9.97572 -9.84927 -9.51557 -9.22712 -9.10649 -8.82714 -8.40903 -7.08026 -6.32952 -3.16406 0.68403 2.23568 2.24684 2.97706 3.07351 3.40059 3.47731 3.66521 3.66681 4.49724 4.52623 4.58844 4.66726 4.76946 4.78069 4.79634 4.86488 4.98743 5.01419 5.13404 5.22575 5.31602 5.35875 5.38557 5.46018 5.47898 5.49936 5.54678 5.56696 5.60948 5.71240 5.73691 5.74168 5.77606 5.85595 5.96823 6.01859 6.04073 6.12443 6.15966 6.21439 6.33992 6.41083 6.47293 6.53457 6.71725 6.81079 6.83175 7.24789 7.50114 7.72496 7.95398 8.34602 9.05111 9.61012 10.28948 11.15489 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004020 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.006446 B = 6963.423399 C = 8623.214013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 C 0.227 3.773 4 N -0.490 5.490 5 C 0.080 3.920 6 C -0.079 4.079 7 C -0.120 4.120 8 C 0.611 3.389 9 O -0.521 6.521 10 N -0.708 5.708 11 C 0.155 3.845 12 H 0.091 0.909 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.091 4.091 16 H 0.082 0.918 17 C 0.120 3.880 18 N -0.609 5.609 19 C -0.329 4.329 20 H 0.074 0.926 21 C -0.020 4.020 22 N -0.919 5.919 23 Si 1.069 2.931 24 H -0.294 1.294 25 H -0.294 1.294 26 H -0.301 1.301 27 C 0.142 3.858 28 C -0.095 4.095 29 H 0.071 0.929 30 C -0.112 4.112 31 O -0.183 6.183 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.407 0.593 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.020 0.980 49 H 0.037 0.963 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 10.707 11.864 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.072 4.072 3 C 0.021 3.979 4 N -0.220 5.220 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.175 4.175 8 C 0.397 3.603 9 O -0.400 6.400 10 N -0.360 5.360 11 C 0.051 3.949 12 H 0.109 0.891 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.005 4.005 18 N -0.336 5.336 19 C -0.456 4.456 20 H 0.092 0.908 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.903 3.097 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.229 1.229 27 C 0.016 3.984 28 C -0.115 4.115 29 H 0.089 0.911 30 C -0.151 4.151 31 O -0.070 6.070 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.244 0.756 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.568 10.637 11.317 20.623 hybrid contribution 0.715 0.076 0.547 0.903 sum -12.853 10.713 11.864 20.512 Atomic orbital electron populations 1.21780 0.92692 1.03309 1.02969 1.20235 0.97109 0.83843 1.05987 1.26591 0.96180 0.96566 0.78547 1.70336 1.18089 1.03687 1.29919 1.22051 0.97173 0.93983 0.91245 1.20371 1.02685 0.93103 0.97438 1.22919 1.13019 0.86397 0.95188 1.16280 0.77794 0.84450 0.81789 1.90829 1.48450 1.26708 1.73976 1.46294 1.66441 1.18174 1.05068 1.20465 0.94393 0.89450 0.90553 0.89129 1.21437 0.99433 1.00083 0.95242 1.21455 0.96090 0.97679 1.00016 1.21955 0.94258 0.97817 0.96943 0.89938 1.21896 0.96443 0.90299 0.91823 1.44858 1.73217 1.13246 1.02291 1.20004 1.32094 0.89090 1.04401 0.90827 1.25757 1.02248 0.96379 0.97694 1.70917 1.13819 1.36926 1.34342 0.83707 0.76460 0.74205 0.75336 1.22174 1.22221 1.22890 1.21602 0.97947 0.88501 0.90378 1.21167 0.99434 0.96034 0.94847 0.91061 1.20604 0.94747 0.99635 1.00118 1.84484 1.63280 1.21952 1.37271 0.91981 0.90534 0.91774 0.88054 0.87203 0.90154 0.90548 0.88623 0.75649 0.91336 0.90197 0.91576 0.91597 0.94566 0.95402 0.92742 0.96278 0.94448 0.91357 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.03 -0.29 6.56 -27.88 -0.18 -0.47 16 3 C 0.23 2.87 7.57 -12.79 -0.10 2.78 16 4 N -0.49 -6.79 11.26 -7.07 -0.08 -6.87 16 5 C 0.08 1.11 7.16 -82.46 -0.59 0.52 16 6 C -0.08 -0.89 9.87 36.01 0.36 -0.54 16 7 C -0.12 -1.75 7.18 -36.84 -0.26 -2.01 16 8 C 0.61 8.82 7.58 -12.83 -0.10 8.73 16 9 O -0.52 -8.10 14.39 5.20 0.07 -8.03 16 10 N -0.71 -9.35 3.91 -56.75 -0.22 -9.57 16 11 C 0.15 1.85 2.67 -69.61 -0.19 1.66 16 12 H 0.09 1.05 7.45 -51.92 -0.39 0.67 16 13 C -0.12 -1.32 5.47 -27.70 -0.15 -1.47 16 14 C -0.11 -1.57 4.64 -27.15 -0.13 -1.70 16 15 C -0.09 -1.44 3.47 -89.31 -0.31 -1.75 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.12 2.58 4.37 -2.63 -0.01 2.56 16 18 N -0.61 -14.82 3.30 -169.67 -0.56 -15.38 16 19 C -0.33 -9.44 10.43 -15.06 -0.16 -9.60 16 20 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 21 C -0.02 -0.59 5.43 -17.43 -0.09 -0.69 16 22 N -0.92 -28.85 13.70 55.49 0.76 -28.09 16 23 Si 1.07 26.78 24.68 -169.99 -4.20 22.58 16 24 H -0.29 -6.96 6.78 56.52 0.38 -6.58 16 25 H -0.29 -6.94 6.74 56.52 0.38 -6.56 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 27 C 0.14 2.85 6.21 -2.67 -0.02 2.83 16 28 C -0.10 -1.53 2.72 -91.33 -0.25 -1.78 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 C -0.11 -1.47 4.84 -29.53 -0.14 -1.62 16 31 O -0.18 -2.61 10.57 4.42 0.05 -2.56 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.15 6.47 -51.93 -0.34 0.81 16 40 H 0.41 5.52 6.15 -40.82 -0.25 5.27 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.03 5.90 -51.93 -0.31 0.73 16 45 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 46 H 0.03 0.63 3.31 -51.93 -0.17 0.46 16 47 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 48 H 0.02 0.38 5.64 -51.93 -0.29 0.09 16 49 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.99 7.80 -51.93 -0.40 0.59 16 51 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -33.91 389.89 -8.35 -42.25 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.09 Total: 3.03 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.95 Total: -3.24 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.10 Total: -59.91 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.12 Total: -10.59 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.20 Total: 22.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.91 -8.35 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980220914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.230 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds