Wall clock time and date at job start Wed Apr 1 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47119 * 2 1 4 4 N 1.30613 * 125.42181 * 89.97179 * 3 2 1 5 5 C 1.33693 * 108.99685 * 179.75107 * 4 3 2 6 6 C 1.50699 * 126.27576 * 180.27103 * 5 4 3 7 7 C 1.36349 * 107.44883 * 0.43764 * 5 4 3 8 8 C 1.46718 * 126.64131 * 179.83956 * 7 5 4 9 9 O 1.21688 * 120.00109 * 359.70857 * 8 7 5 10 10 N 1.34780 * 119.99897 * 179.70974 * 8 7 5 11 11 C 1.46504 * 119.99902 * 179.97438 * 10 8 7 12 12 H 1.09008 * 108.76973 * 327.78191 * 11 10 8 13 13 C 1.51861 * 108.71228 * 209.45551 * 11 10 8 14 14 C 1.52244 * 110.36564 * 292.70688 * 13 11 10 15 15 C 1.52932 * 110.27856 * 298.06401 * 14 13 11 16 16 H 1.08998 * 112.23802 * 291.30668 * 15 14 13 17 17 C 1.55040 * 107.19930 * 167.88346 * 15 14 13 18 18 N 1.47116 * 107.09170 * 266.49574 * 17 15 14 19 19 C 1.36943 * 125.64204 * 180.14671 * 18 17 15 20 20 H 1.07997 * 119.99929 * 169.90948 * 19 18 17 21 21 C 1.38809 * 119.99639 * 349.91017 * 19 18 17 22 22 N 1.31621 * 119.99672 * 152.50932 * 21 19 18 23 23 Si 1.86797 * 120.00296 * 332.50656 * 21 19 18 24 24 H 1.48500 * 109.46905 * 85.34255 * 23 21 19 25 25 H 1.48496 * 109.47219 * 325.34127 * 23 21 19 26 26 H 1.48498 * 109.47385 * 205.34004 * 23 21 19 27 27 C 1.47687 * 108.71670 * 0.41409 * 18 17 15 28 28 C 1.53510 * 110.52958 * 57.03526 * 15 14 13 29 29 H 1.09001 * 108.58155 * 192.07118 * 28 15 14 30 30 C 1.49575 * 115.62919 * 314.51375 * 28 15 14 31 31 O 1.33665 * 125.42111 * 270.00251 * 3 2 1 32 32 H 1.09003 * 109.47127 * 60.00137 * 1 2 3 33 33 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47362 * 299.99755 * 1 2 3 35 35 H 1.09004 * 109.47362 * 240.00245 * 2 1 3 36 36 H 1.08991 * 109.47483 * 119.99634 * 2 1 3 37 37 H 1.09002 * 109.47118 * 270.19100 * 6 5 4 38 38 H 1.09000 * 109.47148 * 30.19578 * 6 5 4 39 39 H 1.09002 * 109.47110 * 150.19348 * 6 5 4 40 40 H 0.96994 * 119.99898 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.31877 * 52.97640 * 13 11 10 42 42 H 1.08999 * 109.32147 * 172.43200 * 13 11 10 43 43 H 1.08996 * 109.33660 * 177.81485 * 14 13 11 44 44 H 1.09003 * 109.33728 * 58.30556 * 14 13 11 45 45 H 1.09004 * 109.91061 * 147.13387 * 17 15 14 46 46 H 1.08998 * 110.06826 * 25.95165 * 17 15 14 47 47 H 0.96999 * 120.00315 * 5.08367 * 22 21 19 48 48 H 1.08998 * 110.45381 * 95.26471 * 27 18 17 49 49 H 1.09000 * 110.45132 * 217.82335 * 27 18 17 50 50 H 1.09001 * 108.08163 * 160.41321 * 30 28 15 51 51 H 1.09008 * 108.07190 * 276.95076 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2842 2.1348 1.0644 5 6 2.7170 3.3419 0.6864 6 6 3.1234 4.4697 1.5996 7 6 2.7197 3.3668 -0.6769 8 6 3.1171 4.4914 -1.5313 9 8 3.4865 5.5364 -1.0289 10 7 3.0729 4.3671 -2.8726 11 6 3.4692 5.4902 -3.7258 12 1 3.2146 6.4217 -3.2201 13 6 2.6911 5.4114 -5.0275 14 6 3.1221 4.1912 -5.8295 15 6 4.6027 4.2950 -6.1979 16 1 4.7933 5.0882 -6.9209 17 6 5.0415 2.9061 -6.7291 18 7 5.5947 2.1616 -5.5872 19 6 6.0982 0.8889 -5.6329 20 1 6.6289 0.4873 -4.7823 21 6 5.9264 0.1151 -6.7724 22 7 6.7987 -0.8256 -7.0668 23 14 4.4572 0.4087 -7.8880 24 1 4.7769 1.4912 -8.8529 25 1 3.2848 0.8066 -7.0682 26 1 4.1420 -0.8385 -8.6300 27 6 5.5113 3.0113 -4.3821 28 6 5.4619 4.4516 -4.9355 29 1 6.4706 4.7365 -5.2349 30 6 4.9622 5.4411 -3.9313 31 8 2.2905 2.1513 -1.0893 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8899 37 1 2.2534 5.0869 1.8240 38 1 3.5269 4.0600 2.5255 39 1 3.8837 5.0779 1.1096 40 1 2.7781 3.5343 -3.2731 41 1 1.6259 5.3403 -4.8072 42 1 2.8761 6.3118 -5.6134 43 1 2.5269 4.1294 -6.7405 44 1 2.9606 3.2925 -5.2341 45 1 5.8044 3.0269 -7.4982 46 1 4.1828 2.3739 -7.1384 47 1 7.5201 -1.0280 -6.4508 48 1 4.6059 2.7856 -3.8188 49 1 6.3940 2.8740 -3.7575 50 1 5.4285 5.2149 -2.9724 51 1 5.2940 6.4327 -4.2397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980220914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:01 Heat of formation + Delta-G solvation = -23.517949 kcal Electronic energy + Delta-G solvation = -32391.755901 eV Core-core repulsion = 28291.889306 eV Total energy + Delta-G solvation = -4099.866595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.61149 -41.71808 -40.12421 -37.36970 -36.49992 -35.23167 -34.96131 -33.60596 -32.73576 -31.87714 -30.95609 -28.90400 -28.33981 -26.48189 -25.79079 -23.70130 -23.44706 -22.63355 -22.47313 -22.19158 -21.66771 -19.82760 -19.53815 -19.12689 -18.17696 -17.34236 -17.07373 -16.84803 -16.79004 -16.10313 -15.77153 -15.61157 -15.56195 -15.22605 -14.95625 -14.92069 -14.57348 -14.35280 -14.29662 -14.18479 -13.98412 -13.67198 -13.38890 -13.31899 -13.10016 -12.92914 -12.89705 -12.74243 -12.67825 -12.32369 -12.23301 -12.11818 -12.02320 -12.00062 -11.75822 -11.49566 -11.32654 -11.21575 -11.08131 -10.89336 -10.59113 -10.25786 -9.85578 -9.17262 -8.67515 -5.43709 -0.36192 1.21384 1.26500 1.36766 1.49011 1.68980 1.89737 2.07580 2.49972 2.75517 3.00028 3.37180 3.49538 3.56127 3.59066 3.72196 3.75168 3.98861 4.07277 4.09462 4.13479 4.15708 4.25802 4.36315 4.38345 4.47783 4.53320 4.54319 4.63713 4.64005 4.69206 4.73911 4.76214 4.84682 4.87843 4.88653 4.91172 4.96594 4.99515 5.12842 5.16422 5.18103 5.19803 5.26784 5.32703 5.42766 5.46037 5.53354 5.57919 6.08055 6.19350 6.46058 6.81586 6.88387 7.46785 8.13175 8.81065 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004020 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.006446 B = 6963.423399 C = 8623.214013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.228 3.772 4 N -0.508 5.508 5 C 0.073 3.927 6 C -0.075 4.075 7 C -0.146 4.146 8 C 0.611 3.389 9 O -0.536 6.536 10 N -0.705 5.705 11 C 0.153 3.847 12 H 0.103 0.897 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.077 4.077 16 H 0.118 0.882 17 C 0.109 3.891 18 N -0.628 5.628 19 C -0.323 4.323 20 H 0.035 0.965 21 C -0.075 4.075 22 N -0.953 5.953 23 Si 1.112 2.888 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.307 1.307 27 C 0.138 3.862 28 C -0.079 4.079 29 H 0.064 0.936 30 C -0.106 4.106 31 O -0.196 6.196 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.404 0.596 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.019 0.981 46 H 0.028 0.972 47 H 0.246 0.754 48 H 0.027 0.973 49 H 0.011 0.989 50 H 0.049 0.951 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.792 13.274 11.309 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C 0.023 3.977 4 N -0.238 5.238 5 C -0.051 4.051 6 C -0.132 4.132 7 C -0.200 4.200 8 C 0.397 3.603 9 O -0.416 6.416 10 N -0.356 5.356 11 C 0.050 3.950 12 H 0.121 0.879 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.095 4.095 16 H 0.136 0.864 17 C -0.015 4.015 18 N -0.355 5.355 19 C -0.452 4.452 20 H 0.053 0.947 21 C -0.269 4.269 22 N -0.596 5.596 23 Si 0.940 3.060 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.235 1.235 27 C 0.013 3.987 28 C -0.099 4.099 29 H 0.082 0.918 30 C -0.144 4.144 31 O -0.083 6.083 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.241 0.759 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.045 0.955 49 H 0.029 0.971 50 H 0.068 0.932 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.251 13.257 10.786 23.583 hybrid contribution 1.645 -0.807 0.857 2.022 sum -14.606 12.450 11.643 22.448 Atomic orbital electron populations 1.21764 0.91242 1.04671 1.02467 1.20537 0.98210 0.81611 1.07001 1.27516 0.94666 0.97548 0.78002 1.70369 1.19080 1.03938 1.30416 1.22516 0.96447 0.94552 0.91593 1.20416 1.03023 0.92464 0.97308 1.23060 1.14488 0.86831 0.95645 1.16307 0.77623 0.84233 0.82184 1.90807 1.49316 1.27201 1.74290 1.46363 1.65957 1.18511 1.04787 1.20640 0.93579 0.89377 0.91366 0.87906 1.21398 0.99971 0.99671 0.93895 1.21453 0.94541 0.98260 1.00971 1.22016 0.95554 0.95133 0.96819 0.86410 1.22131 0.95581 0.93202 0.90624 1.44924 1.73310 1.12237 1.05057 1.19877 1.30959 0.91289 1.03037 0.94729 1.27086 1.03879 0.96038 0.99911 1.71040 1.14794 1.38963 1.34829 0.83175 0.73782 0.74620 0.74461 1.19587 1.19749 1.23535 1.21758 0.96954 0.90917 0.89097 1.21071 0.99713 0.93495 0.95603 0.91788 1.20552 0.95729 1.00015 0.98140 1.84477 1.63688 1.22151 1.37995 0.92622 0.88216 0.92098 0.87480 0.85671 0.88728 0.89361 0.89416 0.75931 0.89661 0.87186 0.89843 0.94059 0.96320 0.95479 0.94428 0.95511 0.97055 0.93197 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.12 16 2 C -0.04 -0.58 6.56 29.85 0.20 -0.39 16 3 C 0.23 5.73 7.57 88.29 0.67 6.40 16 4 N -0.51 -13.95 11.26 -291.05 -3.28 -17.23 16 5 C 0.07 2.03 7.16 41.83 0.30 2.33 16 6 C -0.08 -1.66 9.87 71.24 0.70 -0.96 16 7 C -0.15 -4.25 7.18 24.05 0.17 -4.07 16 8 C 0.61 17.23 7.58 86.46 0.66 17.89 16 9 O -0.54 -16.19 14.39 -4.31 -0.06 -16.25 16 10 N -0.71 -17.53 3.91 -451.68 -1.76 -19.30 16 11 C 0.15 3.13 2.67 43.90 0.12 3.25 16 12 H 0.10 1.97 7.45 -2.38 -0.02 1.95 16 13 C -0.11 -1.82 5.47 29.97 0.16 -1.66 16 14 C -0.11 -2.67 4.64 30.32 0.14 -2.53 16 15 C -0.08 -2.16 3.47 -9.95 -0.03 -2.19 16 16 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 17 C 0.11 4.48 4.37 86.96 0.38 4.86 16 18 N -0.63 -30.95 3.30 -690.72 -2.28 -33.23 16 19 C -0.32 -19.32 10.43 84.03 0.88 -18.45 16 20 H 0.03 2.27 8.06 -2.91 -0.02 2.25 16 21 C -0.08 -4.54 5.43 84.86 0.46 -4.08 16 22 N -0.95 -62.12 13.70 21.65 0.30 -61.82 16 23 Si 1.11 53.97 24.68 68.60 1.69 55.66 16 24 H -0.27 -11.95 6.78 99.48 0.67 -11.28 16 25 H -0.27 -11.99 6.74 99.48 0.67 -11.32 16 26 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 27 C 0.14 5.61 6.21 86.62 0.54 6.15 16 28 C -0.08 -2.39 2.72 -11.25 -0.03 -2.42 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 C -0.11 -2.48 4.84 28.78 0.14 -2.34 16 31 O -0.20 -5.61 10.57 -7.09 -0.07 -5.69 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.09 6.47 -2.39 -0.02 2.07 16 40 H 0.40 10.51 6.15 -92.71 -0.57 9.94 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.18 5.90 -2.39 -0.01 1.16 16 45 H 0.02 0.83 7.89 -2.38 -0.02 0.81 16 46 H 0.03 1.16 3.31 -2.39 -0.01 1.15 16 47 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 48 H 0.03 1.07 5.64 -2.39 -0.01 1.06 16 49 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 1.38 7.80 -2.39 -0.02 1.36 16 51 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -77.91 389.89 0.96 -76.95 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.27 Total: 20.23 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.16 Total: 0.68 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -7.02 Total: -131.58 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.14 Total: -21.94 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 1.69 Total: 55.66 kcal Total: -77.91 0.96 -76.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980220914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal (2) G-P(sol) polarization free energy of solvation -77.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds