Wall clock time and date at job start Wed Apr 1 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 C 1.50700 * 109.47297 * 179.97438 * 3 2 1 5 5 C 1.35318 * 126.66138 * 90.32148 * 4 3 2 6 6 C 1.42272 * 103.91902 * 180.08438 * 5 4 3 7 7 C 1.48328 * 126.93702 * 179.88745 * 6 5 4 8 8 O 1.21498 * 120.00068 * 359.71118 * 7 6 5 9 9 N 1.34776 * 120.00095 * 179.70494 * 7 6 5 10 10 C 1.46503 * 120.00455 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.72629 * 35.66022 * 10 9 7 12 12 C 1.53326 * 109.73913 * 275.00748 * 10 9 7 13 13 C 1.52593 * 108.43836 * 176.15649 * 12 10 9 14 14 C 1.51893 * 111.25819 * 61.89219 * 13 12 10 15 15 H 1.08997 * 111.46102 * 74.20154 * 14 13 12 16 16 C 1.55348 * 107.00879 * 197.41912 * 14 13 12 17 17 N 1.47176 * 106.96331 * 92.57226 * 16 14 13 18 18 C 1.36934 * 125.64906 * 180.99736 * 17 16 14 19 19 H 1.07997 * 120.00422 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00194 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00373 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47209 * 90.00231 * 22 20 18 24 24 H 1.48501 * 109.47056 * 210.00422 * 22 20 18 25 25 H 1.48503 * 109.46956 * 330.00159 * 22 20 18 26 26 C 1.47280 * 108.39444 * 0.36694 * 17 16 14 27 27 C 1.53900 * 104.31896 * 24.33684 * 26 17 16 28 28 H 1.08994 * 109.20740 * 76.13389 * 27 26 17 29 29 C 1.50742 * 113.02723 * 197.98388 * 27 26 17 30 30 N 1.30985 * 106.12315 * 359.62506 * 6 5 4 31 31 O 1.20904 * 111.43921 * 0.24173 * 30 6 5 32 32 H 1.08997 * 109.46748 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47186 * 299.99755 * 1 2 3 34 34 H 1.08999 * 109.47106 * 60.00153 * 1 2 3 35 35 H 1.08993 * 109.47636 * 240.00490 * 2 1 3 36 36 H 1.09000 * 109.47480 * 119.99463 * 2 1 3 37 37 H 1.09005 * 109.47047 * 59.99903 * 3 2 1 38 38 H 1.08999 * 109.47162 * 299.99813 * 3 2 1 39 39 H 1.07998 * 128.04174 * 359.94544 * 5 4 3 40 40 H 0.97000 * 120.00123 * 0.02562 * 9 7 6 41 41 H 1.09002 * 109.67640 * 295.90532 * 12 10 9 42 42 H 1.08995 * 109.67908 * 56.41012 * 12 10 9 43 43 H 1.08999 * 109.16157 * 182.77079 * 13 12 10 44 44 H 1.08994 * 109.16098 * 301.96415 * 13 12 10 45 45 H 1.08997 * 109.96333 * 211.95042 * 16 14 13 46 46 H 1.09004 * 109.96038 * 333.19994 * 16 14 13 47 47 H 0.96998 * 120.00333 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.84975 * 265.37886 * 26 17 16 49 49 H 1.09001 * 109.93041 * 142.83711 * 26 17 16 50 50 H 1.09002 * 109.02149 * 304.54382 * 29 27 26 51 51 H 1.09002 * 108.96601 * 185.67205 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4427 0.0006 5 6 4.3554 1.4487 -1.0845 6 6 5.6672 1.4438 -0.5340 7 6 6.9479 1.4448 -1.2822 8 8 6.9417 1.4450 -2.4972 9 7 8.1186 1.4456 -0.6144 10 6 9.3836 1.4461 -1.3534 11 1 9.2805 2.0439 -2.2590 12 6 9.7680 0.0085 -1.7230 13 6 11.0352 0.0508 -2.5719 14 6 12.1964 0.6514 -1.7985 15 1 12.5825 -0.0449 -1.0541 16 6 13.2736 1.0599 -2.8406 17 7 13.0215 2.4673 -3.1897 18 6 13.7377 3.2061 -4.0932 19 1 13.4719 4.2360 -4.2802 20 6 14.8056 2.6314 -4.7686 21 7 15.1293 1.3761 -4.5411 22 14 15.7831 3.6394 -6.0005 23 1 16.9082 4.3150 -5.3056 24 1 16.3197 2.7448 -7.0574 25 1 14.8984 4.6599 -6.6181 26 6 11.8610 2.9377 -2.4143 27 6 11.8256 2.0139 -1.1839 28 1 12.6058 2.3167 -0.4856 29 6 10.4942 2.0241 -0.4771 30 7 5.5157 1.4439 0.7671 31 8 4.3468 1.4433 1.0759 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5137 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6766 1.9564 -0.8900 39 1 4.0709 1.4536 -2.1263 40 1 8.1237 1.4452 0.3556 41 1 9.9529 -0.5667 -0.8157 42 1 8.9605 -0.4527 -2.2916 43 1 11.2916 -0.9620 -2.8827 44 1 10.8528 0.6603 -3.4569 45 1 14.2685 0.9564 -2.4076 46 1 13.1874 0.4349 -3.7295 47 1 15.8757 0.9745 -5.0128 48 1 10.9423 2.8392 -2.9925 49 1 12.0127 3.9734 -2.1100 50 1 10.2402 3.0505 -0.2126 51 1 10.5724 1.4314 0.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980226584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:46 Heat of formation + Delta-G solvation = 29.507046 kcal Electronic energy + Delta-G solvation = -30417.978979 eV Core-core repulsion = 26320.411721 eV Total energy + Delta-G solvation = -4097.567258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.40638 -40.22316 -38.88283 -36.22933 -35.63699 -34.28565 -33.41193 -32.09571 -31.60595 -30.78839 -28.95394 -27.52357 -26.28460 -25.32271 -24.28623 -23.14486 -22.25906 -22.17530 -21.44120 -20.29403 -19.87343 -18.40604 -18.06593 -17.80006 -17.07867 -16.62273 -16.39293 -15.71809 -15.16803 -14.96171 -14.73740 -14.51758 -14.08879 -13.88402 -13.84437 -13.80397 -13.62890 -13.48150 -12.95592 -12.57861 -12.40383 -12.18703 -12.07314 -11.90600 -11.85468 -11.69738 -11.59766 -11.25896 -11.11251 -10.99980 -10.94695 -10.74662 -10.66087 -10.52294 -10.39580 -9.96770 -9.84902 -9.80853 -9.62134 -9.50725 -9.45202 -9.02595 -8.54723 -6.75766 -5.65918 -2.98660 0.81558 1.34819 2.53965 2.81329 3.00495 3.43363 3.48376 3.50357 3.68778 4.07093 4.39134 4.40375 4.54459 4.61874 4.67567 4.82162 4.91097 4.93104 5.05256 5.11313 5.16710 5.20786 5.29943 5.40297 5.46693 5.48155 5.56222 5.57875 5.59257 5.62005 5.71949 5.72641 5.82665 5.85181 5.94886 6.08922 6.18287 6.24739 6.37629 6.45079 6.46879 6.57775 6.67384 6.83560 6.95457 7.05979 7.27474 7.62440 7.68642 7.69181 7.88570 7.97635 8.31250 9.27663 9.88280 10.55563 11.45786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.001832 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.585944 B =15278.093288 C =15530.203055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.039 4.039 4 C -0.032 4.032 5 C -0.180 4.180 6 C -0.021 4.021 7 C 0.596 3.404 8 O -0.517 6.517 9 N -0.707 5.707 10 C 0.143 3.857 11 H 0.098 0.902 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.113 4.113 15 H 0.071 0.929 16 C 0.183 3.817 17 N -0.605 5.605 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.140 3.860 27 C -0.092 4.092 28 H 0.074 0.926 29 C -0.107 4.107 30 N -0.333 5.333 31 O 0.121 5.879 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.181 0.819 40 H 0.403 0.597 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.020 0.980 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.508 -3.223 13.602 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.095 4.095 5 C -0.203 4.203 6 C -0.180 4.180 7 C 0.379 3.621 8 O -0.391 6.391 9 N -0.358 5.358 10 C 0.040 3.960 11 H 0.116 0.884 12 C -0.162 4.162 13 C -0.142 4.142 14 C -0.132 4.132 15 H 0.089 0.911 16 C 0.058 3.942 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.013 3.987 27 C -0.112 4.112 28 H 0.092 0.908 29 C -0.145 4.145 30 N -0.035 5.035 31 O 0.046 5.954 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.198 0.802 40 H 0.238 0.762 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.366 -3.234 13.535 29.813 hybrid contribution 0.318 0.471 -0.930 1.090 sum -26.048 -2.764 12.605 29.069 Atomic orbital electron populations 1.21766 0.94733 1.02315 1.02199 1.21576 0.96476 0.94887 1.03260 1.20282 0.83126 0.99167 1.05146 1.24501 0.96224 1.03340 0.85426 1.22462 0.89695 1.06529 1.01596 1.23605 0.96975 1.07320 0.90115 1.16876 0.81587 0.77213 0.86459 1.90839 1.86597 1.49247 1.12370 1.46012 1.05477 1.73660 1.10637 1.21226 0.80871 0.97940 0.95943 0.88408 1.21899 0.98531 0.95523 1.00276 1.21252 0.93052 1.01095 0.98786 1.22251 0.97482 0.95158 0.98346 0.91079 1.21472 0.93505 0.85284 0.93949 1.44437 1.31936 1.09366 1.47373 1.19061 1.08067 0.94140 1.14097 0.90530 1.24785 0.99035 0.96413 1.00324 1.69959 1.30356 1.11535 1.45186 0.86129 0.80056 0.78871 0.80790 1.21692 1.21719 1.20750 1.21393 0.91153 0.95541 0.90567 1.21368 0.94880 0.97407 0.97582 0.90793 1.21140 0.94296 1.00866 0.98239 1.74166 0.97273 1.16372 1.15644 1.84766 1.11104 1.66069 1.33492 0.92198 0.92350 0.92336 0.91178 0.91239 0.89022 0.88145 0.80195 0.76246 0.92134 0.92058 0.92079 0.91191 0.94264 0.93365 0.93842 0.96288 0.94667 0.91664 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.91 37.16 0.37 -0.07 16 2 C -0.12 -0.47 5.92 -26.73 -0.16 -0.63 16 3 C -0.04 -0.15 5.78 -27.88 -0.16 -0.31 16 4 C -0.03 -0.24 6.73 -35.35 -0.24 -0.47 16 5 C -0.18 -1.71 10.92 -39.07 -0.43 -2.14 16 6 C -0.02 -0.25 7.19 -82.53 -0.59 -0.84 16 7 C 0.60 8.45 7.82 -12.11 -0.09 8.36 16 8 O -0.52 -8.99 16.63 5.37 0.09 -8.90 16 9 N -0.71 -9.00 5.10 -54.52 -0.28 -9.28 16 10 C 0.14 2.06 2.29 -67.85 -0.16 1.90 16 11 H 0.10 1.67 6.27 -51.93 -0.33 1.34 16 12 C -0.12 -1.82 5.52 -26.77 -0.15 -1.96 16 13 C -0.10 -1.79 4.64 -27.50 -0.13 -1.92 16 14 C -0.11 -2.09 3.49 -89.42 -0.31 -2.40 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.18 4.45 4.67 -2.43 -0.01 4.44 16 17 N -0.60 -15.65 3.39 -170.05 -0.58 -16.23 16 18 C -0.23 -6.41 10.29 -15.06 -0.16 -6.57 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.50 10.32 55.49 0.57 -26.93 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.14 2.94 6.15 -3.15 -0.02 2.92 16 27 C -0.09 -1.60 2.86 -90.76 -0.26 -1.86 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 C -0.11 -1.45 4.86 -27.96 -0.14 -1.59 16 30 N -0.33 -3.73 11.84 33.29 0.39 -3.33 16 31 O 0.12 1.13 11.18 17.26 0.19 1.32 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.40 4.33 8.36 -40.82 -0.34 3.98 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.40 7.14 -51.93 -0.37 1.02 16 45 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 46 H 0.05 1.31 7.00 -51.93 -0.36 0.94 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.02 0.41 6.15 -51.93 -0.32 0.09 16 49 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -33.02 402.63 -9.71 -42.73 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.42 Total: 0.53 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.72 Total: -3.52 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.11 Total: -55.78 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.28 Total: -7.58 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.02 -9.71 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980226584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.234 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds