Wall clock time and date at job start Wed Apr 1 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 C 1.50700 * 109.47297 * 179.97438 * 3 2 1 5 5 C 1.35318 * 126.66138 * 90.32148 * 4 3 2 6 6 C 1.42272 * 103.91902 * 180.08438 * 5 4 3 7 7 C 1.48328 * 126.93702 * 179.88745 * 6 5 4 8 8 O 1.21498 * 120.00068 * 359.71118 * 7 6 5 9 9 N 1.34776 * 120.00095 * 179.70494 * 7 6 5 10 10 C 1.46503 * 120.00455 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.72629 * 35.66022 * 10 9 7 12 12 C 1.53326 * 109.73913 * 275.00748 * 10 9 7 13 13 C 1.52593 * 108.43836 * 176.15649 * 12 10 9 14 14 C 1.51893 * 111.25819 * 61.89219 * 13 12 10 15 15 H 1.08997 * 111.46102 * 74.20154 * 14 13 12 16 16 C 1.55348 * 107.00879 * 197.41912 * 14 13 12 17 17 N 1.47176 * 106.96331 * 92.57226 * 16 14 13 18 18 C 1.36934 * 125.64906 * 180.99736 * 17 16 14 19 19 H 1.07997 * 120.00422 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00194 * 359.97438 * 18 17 16 21 21 N 1.31621 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00373 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47209 * 90.00231 * 22 20 18 24 24 H 1.48501 * 109.47056 * 210.00422 * 22 20 18 25 25 H 1.48503 * 109.46956 * 330.00159 * 22 20 18 26 26 C 1.47280 * 108.39444 * 0.36694 * 17 16 14 27 27 C 1.53900 * 104.31896 * 24.33684 * 26 17 16 28 28 H 1.08994 * 109.20740 * 76.13389 * 27 26 17 29 29 C 1.50742 * 113.02723 * 197.98388 * 27 26 17 30 30 N 1.30985 * 106.12315 * 359.62506 * 6 5 4 31 31 O 1.20904 * 111.43921 * 0.24173 * 30 6 5 32 32 H 1.08997 * 109.46748 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47186 * 299.99755 * 1 2 3 34 34 H 1.08999 * 109.47106 * 60.00153 * 1 2 3 35 35 H 1.08993 * 109.47636 * 240.00490 * 2 1 3 36 36 H 1.09000 * 109.47480 * 119.99463 * 2 1 3 37 37 H 1.09005 * 109.47047 * 59.99903 * 3 2 1 38 38 H 1.08999 * 109.47162 * 299.99813 * 3 2 1 39 39 H 1.07998 * 128.04174 * 359.94544 * 5 4 3 40 40 H 0.97000 * 120.00123 * 0.02562 * 9 7 6 41 41 H 1.09002 * 109.67640 * 295.90532 * 12 10 9 42 42 H 1.08995 * 109.67908 * 56.41012 * 12 10 9 43 43 H 1.08999 * 109.16157 * 182.77079 * 13 12 10 44 44 H 1.08994 * 109.16098 * 301.96415 * 13 12 10 45 45 H 1.08997 * 109.96333 * 211.95042 * 16 14 13 46 46 H 1.09004 * 109.96038 * 333.19994 * 16 14 13 47 47 H 0.96998 * 120.00333 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.84975 * 265.37886 * 26 17 16 49 49 H 1.09001 * 109.93041 * 142.83711 * 26 17 16 50 50 H 1.09002 * 109.02149 * 304.54382 * 29 27 26 51 51 H 1.09002 * 108.96601 * 185.67205 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4427 0.0006 5 6 4.3554 1.4487 -1.0845 6 6 5.6672 1.4438 -0.5340 7 6 6.9479 1.4448 -1.2822 8 8 6.9417 1.4450 -2.4972 9 7 8.1186 1.4456 -0.6144 10 6 9.3836 1.4461 -1.3534 11 1 9.2805 2.0439 -2.2590 12 6 9.7680 0.0085 -1.7230 13 6 11.0352 0.0508 -2.5719 14 6 12.1964 0.6514 -1.7985 15 1 12.5825 -0.0449 -1.0541 16 6 13.2736 1.0599 -2.8406 17 7 13.0215 2.4673 -3.1897 18 6 13.7377 3.2061 -4.0932 19 1 13.4719 4.2360 -4.2802 20 6 14.8056 2.6314 -4.7686 21 7 15.1293 1.3761 -4.5411 22 14 15.7831 3.6394 -6.0005 23 1 16.9082 4.3150 -5.3056 24 1 16.3197 2.7448 -7.0574 25 1 14.8984 4.6599 -6.6181 26 6 11.8610 2.9377 -2.4143 27 6 11.8256 2.0139 -1.1839 28 1 12.6058 2.3167 -0.4856 29 6 10.4942 2.0241 -0.4771 30 7 5.5157 1.4439 0.7671 31 8 4.3468 1.4433 1.0759 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5137 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6766 1.9564 -0.8900 39 1 4.0709 1.4536 -2.1263 40 1 8.1237 1.4452 0.3556 41 1 9.9529 -0.5667 -0.8157 42 1 8.9605 -0.4527 -2.2916 43 1 11.2916 -0.9620 -2.8827 44 1 10.8528 0.6603 -3.4569 45 1 14.2685 0.9564 -2.4076 46 1 13.1874 0.4349 -3.7295 47 1 15.8757 0.9745 -5.0128 48 1 10.9423 2.8392 -2.9925 49 1 12.0127 3.9734 -2.1100 50 1 10.2402 3.0505 -0.2126 51 1 10.5724 1.4314 0.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980226584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:45 Heat of formation + Delta-G solvation = 9.389212 kcal Electronic energy + Delta-G solvation = -30418.851354 eV Core-core repulsion = 26320.411721 eV Total energy + Delta-G solvation = -4098.439633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.18213 -41.49900 -40.26373 -37.14327 -36.59472 -35.28992 -34.85684 -33.36966 -32.68259 -32.21558 -30.64769 -27.93683 -27.83209 -27.01684 -25.58734 -23.90101 -23.64077 -22.95674 -22.48319 -21.71062 -21.26374 -19.65828 -18.96720 -18.83796 -18.55779 -17.85814 -17.58207 -16.79952 -16.41808 -16.05374 -15.97092 -15.65718 -15.46029 -15.11382 -14.98121 -14.93943 -14.58814 -14.15564 -14.10355 -14.06959 -13.74144 -13.35493 -13.26316 -13.20235 -12.91527 -12.72740 -12.54725 -12.52248 -12.46068 -12.25862 -12.17854 -12.15630 -11.81224 -11.79275 -11.64140 -11.60768 -11.50758 -11.24168 -11.08570 -10.94761 -10.69976 -10.45032 -10.19734 -8.87800 -7.85512 -5.20541 -0.01070 0.62040 1.42971 1.45334 1.53915 1.72008 1.98148 1.99381 2.48207 2.81660 3.31671 3.42806 3.59719 3.64659 3.73700 3.88018 3.94203 4.06473 4.09852 4.11493 4.14569 4.17395 4.28413 4.31726 4.46311 4.51871 4.57631 4.63752 4.69437 4.73610 4.80946 4.82915 4.89027 4.92762 4.97062 4.99537 5.05764 5.08752 5.19073 5.27954 5.30402 5.33407 5.35273 5.41187 5.46881 5.50577 5.51634 5.73711 5.80186 6.19526 6.25551 6.88133 6.99277 7.10180 7.77875 8.43604 9.24612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.001832 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.585944 B =15278.093288 C =15530.203055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.037 4.037 4 C -0.009 4.009 5 C -0.197 4.197 6 C -0.043 4.043 7 C 0.595 3.405 8 O -0.558 6.558 9 N -0.694 5.694 10 C 0.149 3.851 11 H 0.066 0.934 12 C -0.112 4.112 13 C -0.096 4.096 14 C -0.097 4.097 15 H 0.099 0.901 16 C 0.190 3.810 17 N -0.627 5.627 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.978 3.022 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.134 3.866 27 C -0.077 4.077 28 H 0.078 0.922 29 C -0.097 4.097 30 N -0.341 5.341 31 O 0.128 5.872 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.188 0.812 40 H 0.416 0.584 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.004 0.996 46 H 0.009 0.991 47 H 0.246 0.754 48 H 0.015 0.985 49 H 0.038 0.962 50 H 0.080 0.920 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.827 -2.826 15.991 33.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.075 4.075 4 C -0.072 4.072 5 C -0.219 4.219 6 C -0.201 4.201 7 C 0.379 3.621 8 O -0.435 6.435 9 N -0.345 5.345 10 C 0.045 3.955 11 H 0.084 0.916 12 C -0.151 4.151 13 C -0.134 4.134 14 C -0.116 4.116 15 H 0.117 0.883 16 C 0.065 3.935 17 N -0.353 5.353 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.009 3.991 27 C -0.096 4.096 28 H 0.097 0.903 29 C -0.135 4.135 30 N -0.041 5.041 31 O 0.050 5.950 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.205 0.795 40 H 0.254 0.746 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.022 0.978 46 H 0.027 0.973 47 H 0.056 0.944 48 H 0.032 0.968 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.701 -2.820 15.974 32.968 hybrid contribution 0.943 0.357 -1.679 1.958 sum -27.758 -2.463 14.295 31.320 Atomic orbital electron populations 1.21753 0.93833 1.02419 1.02843 1.21555 0.97181 0.94620 1.02711 1.20525 0.80350 0.99612 1.07007 1.25047 0.97355 1.00748 0.84041 1.22657 0.89106 1.07532 1.02644 1.23420 0.96717 1.09258 0.90697 1.17168 0.82525 0.76268 0.86117 1.90817 1.87274 1.51191 1.14183 1.45812 1.04549 1.72975 1.11144 1.20993 0.81974 0.97238 0.95327 0.91598 1.21785 0.96468 0.96127 1.00676 1.21110 0.94124 1.00365 0.97811 1.22157 0.95691 0.96537 0.97240 0.88323 1.21243 0.93965 0.84419 0.93874 1.44752 1.32956 1.10022 1.47540 1.19458 1.08452 0.94642 1.14705 0.90326 1.25646 1.00327 0.97600 1.02421 1.70189 1.30626 1.13028 1.46099 0.85081 0.78573 0.77446 0.78261 1.21022 1.22013 1.19641 1.21581 0.89175 0.96624 0.91729 1.21269 0.97424 0.94978 0.95968 0.90319 1.21058 0.91316 1.02599 0.98517 1.74154 0.98230 1.16648 1.15096 1.84743 1.10804 1.65380 1.34031 0.92425 0.91588 0.91821 0.91944 0.91684 0.87077 0.86367 0.79480 0.74646 0.89275 0.92891 0.91741 0.94883 0.97768 0.97318 0.94449 0.96760 0.94388 0.90123 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 71.98 0.71 0.20 16 2 C -0.12 -0.66 5.92 30.60 0.18 -0.48 16 3 C -0.04 -0.18 5.78 29.85 0.17 0.00 16 4 C -0.01 -0.11 6.73 25.01 0.17 0.06 16 5 C -0.20 -3.49 10.92 22.60 0.25 -3.25 16 6 C -0.04 -0.99 7.19 42.96 0.31 -0.68 16 7 C 0.59 16.58 7.82 86.93 0.68 17.26 16 8 O -0.56 -19.80 16.63 -3.71 -0.06 -19.86 16 9 N -0.69 -16.46 5.10 -444.70 -2.27 -18.73 16 10 C 0.15 4.06 2.29 45.04 0.10 4.16 16 11 H 0.07 2.27 6.27 -2.38 -0.01 2.26 16 12 C -0.11 -3.12 5.52 30.57 0.17 -2.95 16 13 C -0.10 -3.32 4.64 30.09 0.14 -3.18 16 14 C -0.10 -3.53 3.49 -10.01 -0.03 -3.57 16 15 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 16 C 0.19 9.66 4.67 87.06 0.41 10.06 16 17 N -0.63 -33.57 3.39 -691.91 -2.35 -35.92 16 18 C -0.24 -14.29 10.29 84.03 0.86 -13.43 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 21 N -0.95 -59.05 10.32 21.65 0.22 -58.82 16 22 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.13 5.70 6.15 86.53 0.53 6.23 16 27 C -0.08 -2.53 2.86 -10.89 -0.03 -2.56 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 C -0.10 -2.33 4.86 29.80 0.14 -2.18 16 30 N -0.34 -7.02 11.84 -49.52 -0.59 -7.61 16 31 O 0.13 2.09 11.18 71.94 0.80 2.90 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.17 8.14 -2.38 -0.02 0.16 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.42 7.75 8.36 -92.71 -0.78 6.97 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.03 1.37 7.14 -2.39 -0.02 1.36 16 45 H 0.00 0.23 7.51 -2.39 -0.02 0.22 16 46 H 0.01 0.50 7.00 -2.38 -0.02 0.48 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.01 0.64 6.15 -2.39 -0.01 0.63 16 49 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.19 402.63 3.18 -73.02 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.16 Total: 13.30 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 5.23 Total: 2.19 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -4.98 Total: -121.08 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.74 Total: -16.96 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -76.19 3.18 -73.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980226584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds