Wall clock time and date at job start Wed Apr 1 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 C 1.50701 * 109.47374 * 180.02562 * 3 2 1 5 5 C 1.38021 * 119.51128 * 125.27989 * 4 3 2 6 6 C 1.39930 * 119.12853 * 180.22983 * 5 4 3 7 7 C 1.48161 * 120.88944 * 179.77411 * 6 5 4 8 8 O 1.21512 * 120.00290 * 359.71428 * 7 6 5 9 9 N 1.34773 * 119.99837 * 179.71825 * 7 6 5 10 10 C 1.46500 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47297 * 324.99623 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00124 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 N 1.46506 * 109.46949 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99462 * 274.99538 * 17 15 14 19 19 H 1.08000 * 120.00491 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99704 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00100 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46928 * 60.00291 * 22 20 18 24 24 H 1.48499 * 109.47165 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47284 * 300.00140 * 22 20 18 26 26 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 27 27 C 1.39613 * 118.21571 * 359.50233 * 6 5 4 28 28 C 1.38855 * 118.94950 * 0.24638 * 27 6 5 29 29 O 1.35681 * 119.62023 * 180.02562 * 28 27 6 30 30 N 1.31881 * 119.50998 * 305.00148 * 4 3 2 31 31 H 1.09005 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47173 * 299.99828 * 1 2 3 33 33 H 1.08994 * 109.47104 * 60.00244 * 1 2 3 34 34 H 1.09002 * 109.47173 * 240.00172 * 2 1 3 35 35 H 1.08998 * 109.47535 * 119.99980 * 2 1 3 36 36 H 1.09002 * 109.46933 * 60.00025 * 3 2 1 37 37 H 1.08998 * 109.46876 * 300.00383 * 3 2 1 38 38 H 1.08002 * 120.43353 * 0.02562 * 5 4 3 39 39 H 0.97002 * 119.99920 * 0.02562 * 9 7 6 40 40 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 41 41 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 42 42 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 43 43 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 44 44 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 46 46 H 0.97000 * 120.00279 * 94.99983 * 17 15 14 47 47 H 0.97000 * 119.99861 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.47839 * 300.00447 * 26 15 14 49 49 H 1.09000 * 109.47160 * 180.02562 * 26 15 14 50 50 H 1.08004 * 120.52304 * 180.27540 * 27 6 5 51 51 H 0.96692 * 114.00071 * 90.00477 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2265 2.1365 -0.9814 6 6 5.6257 2.1271 -0.9772 7 6 6.3944 2.8545 -2.0141 8 8 5.8100 3.4657 -2.8867 9 7 7.7418 2.8381 -1.9897 10 6 8.5018 3.5568 -3.0153 11 1 7.9710 3.5025 -3.9658 12 6 8.6583 5.0214 -2.6015 13 6 9.4515 5.7721 -3.6730 14 6 10.8340 5.1345 -3.8245 15 6 10.6776 3.6699 -4.2383 16 1 10.1464 3.6156 -5.1885 17 7 12.0014 3.0592 -4.3827 18 6 12.6873 3.1823 -5.5616 19 1 12.2525 3.7300 -6.3846 20 6 13.9418 2.6042 -5.6983 21 7 14.4720 1.9371 -4.6950 22 14 14.8778 2.7727 -7.3060 23 1 15.1122 4.2106 -7.5939 24 1 16.1816 2.0706 -7.1958 25 1 14.0834 2.1706 -8.4068 26 6 9.8844 2.9191 -3.1668 27 6 6.2781 1.4188 0.0338 28 6 5.5178 0.7520 0.9853 29 8 6.1377 0.0599 1.9741 30 7 4.1971 0.7841 0.9391 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 3.6852 2.6768 -1.7439 39 1 8.2083 2.3498 -1.2933 40 1 7.6734 5.4758 -2.4940 41 1 9.1892 5.0757 -1.6511 42 1 8.9203 5.7179 -4.6232 43 1 9.5626 6.8157 -3.3784 44 1 11.3993 5.6696 -4.5875 45 1 11.3653 5.1889 -2.8743 46 1 12.3920 2.5676 -3.6434 47 1 15.3488 1.5334 -4.7904 48 1 10.4156 2.9735 -2.2166 49 1 9.7733 1.8756 -3.4614 50 1 7.3569 1.3904 0.0752 51 1 6.3170 0.5828 2.7674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981374364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:10 Heat of formation + Delta-G solvation = -56.283732 kcal Electronic energy + Delta-G solvation = -29847.407005 eV Core-core repulsion = 25746.119579 eV Total energy + Delta-G solvation = -4101.287426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23760 -39.86400 -38.09815 -37.64922 -35.29556 -34.82351 -33.57917 -32.76264 -31.16765 -31.05050 -29.41331 -27.83906 -27.34880 -24.99006 -23.73299 -23.30019 -22.29090 -21.88680 -21.12461 -20.43544 -19.63454 -18.96937 -17.57318 -17.37024 -16.99482 -16.08238 -16.05756 -15.88003 -15.26846 -15.18447 -14.76188 -14.68122 -14.42756 -14.08367 -13.96307 -13.80373 -13.58815 -13.18552 -13.14806 -12.77281 -12.70779 -12.43627 -12.21877 -12.15048 -12.12456 -11.84057 -11.55148 -11.06956 -11.03997 -11.01753 -10.88962 -10.77880 -10.56688 -10.40596 -10.29374 -10.25435 -10.20273 -9.92648 -9.73547 -9.62542 -9.25014 -9.12381 -8.89256 -6.99054 -5.79011 -3.07880 0.29264 0.52909 2.53513 2.83053 3.08732 3.37437 3.42894 3.47564 3.48206 3.98239 4.19915 4.49086 4.52926 4.55790 4.66671 4.68178 4.76195 4.91454 4.96585 5.01377 5.13952 5.20761 5.25583 5.35672 5.38090 5.45704 5.46085 5.54228 5.61026 5.62796 5.68490 5.68599 5.81172 5.84441 5.91370 5.95560 5.96397 6.01689 6.08476 6.20349 6.26351 6.43331 6.47728 6.55287 6.67912 6.92320 7.03481 7.08252 7.28881 7.45803 7.68248 7.94416 8.39566 9.50784 10.07495 10.42249 11.43526 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.001877 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.330984 B =14910.371788 C =15385.130436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.152 3.848 5 C -0.125 4.125 6 C -0.065 4.065 7 C 0.557 3.443 8 O -0.526 6.526 9 N -0.713 5.713 10 C 0.148 3.852 11 H 0.091 0.909 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.130 4.130 27 C -0.162 4.162 28 C 0.314 3.686 29 O -0.478 6.478 30 N -0.486 5.486 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.400 0.600 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.146 0.854 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.378 0.701 14.567 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.108 4.108 4 C 0.015 3.985 5 C -0.145 4.145 6 C -0.076 4.076 7 C 0.342 3.658 8 O -0.403 6.403 9 N -0.363 5.363 10 C 0.044 3.956 11 H 0.109 0.891 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.364 5.364 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.169 4.169 27 C -0.184 4.184 28 C 0.135 3.865 29 O -0.285 6.285 30 N -0.206 5.206 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.164 0.836 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -25.112 0.230 14.004 28.754 hybrid contribution 1.696 0.389 -0.401 1.786 sum -23.415 0.619 13.603 27.087 Atomic orbital electron populations 1.21781 0.95440 1.01891 1.01856 1.21455 0.95728 0.95346 1.03051 1.20658 0.87488 0.98884 1.03742 1.21004 0.96770 0.91507 0.89263 1.22152 0.93213 0.99622 0.99557 1.20356 0.94429 0.97529 0.95254 1.18080 0.82498 0.80669 0.84528 1.90791 1.69591 1.43217 1.36680 1.46105 1.05589 1.52981 1.31618 1.21130 0.92211 0.91111 0.91131 0.89121 1.21886 1.00212 0.94677 0.99480 1.21485 0.96949 0.98553 0.98333 1.22297 0.94886 0.98896 1.01670 1.20090 0.87317 0.90233 0.95041 0.93299 1.42385 1.15179 1.63541 1.15305 1.19201 0.98222 1.28078 0.91524 0.91176 1.24738 0.97755 1.00699 0.97725 1.69650 1.17813 1.40011 1.30712 0.86275 0.79210 0.77503 0.83245 1.21263 1.21716 1.21272 1.22111 0.93326 1.00376 1.01109 1.22322 1.01908 0.97852 0.96270 1.18937 0.86677 0.90537 0.90330 1.84821 1.76880 1.39321 1.27503 1.66781 1.09912 1.18018 1.25891 0.92554 0.92610 0.92630 0.92029 0.90776 0.89549 0.89682 0.83008 0.76515 0.92120 0.91968 0.92101 0.92414 0.91812 0.92639 0.78325 0.93482 0.91615 0.91184 0.83593 0.73977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.80 5.79 -26.73 -0.15 -0.96 16 3 C -0.07 -0.46 5.61 -27.88 -0.16 -0.62 16 4 C 0.15 1.39 6.18 -82.65 -0.51 0.88 16 5 C -0.12 -1.21 9.27 -39.03 -0.36 -1.57 16 6 C -0.06 -0.67 5.91 -104.68 -0.62 -1.29 16 7 C 0.56 6.92 7.76 -12.19 -0.09 6.83 16 8 O -0.53 -8.20 16.11 5.36 0.09 -8.11 16 9 N -0.71 -8.03 5.04 -54.65 -0.28 -8.31 16 10 C 0.15 1.97 2.45 -67.93 -0.17 1.81 16 11 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 12 C -0.12 -1.59 5.49 -26.73 -0.15 -1.73 16 13 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 15 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -17.50 5.12 -53.42 -0.27 -17.77 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.13 -1.98 4.86 -26.73 -0.13 -2.11 16 27 C -0.16 -1.44 9.55 -38.84 -0.37 -1.81 16 28 C 0.31 3.00 7.74 -17.17 -0.13 2.87 16 29 O -0.48 -3.88 13.56 -18.75 -0.25 -4.13 16 30 N -0.49 -4.97 9.87 -9.60 -0.09 -5.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 38 H 0.15 1.37 7.62 -52.49 -0.40 0.97 16 39 H 0.40 3.56 6.74 -40.82 -0.28 3.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.15 0.99 6.53 -52.48 -0.34 0.65 16 51 H 0.40 1.21 9.06 45.56 0.41 1.63 16 LS Contribution 414.97 15.07 6.25 6.25 Total: -1.00 -33.45 414.97 -9.67 -43.12 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.60 Total: 10.08 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.21 Total: -6.22 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.08 Total: -58.18 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.17 Total: -12.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.45 -9.67 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.162 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds