Wall clock time and date at job start Wed Apr 1 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 C 1.50701 * 109.47374 * 180.02562 * 3 2 1 5 5 C 1.38021 * 119.51128 * 125.27989 * 4 3 2 6 6 C 1.39930 * 119.12853 * 180.22983 * 5 4 3 7 7 C 1.48161 * 120.88944 * 179.77411 * 6 5 4 8 8 O 1.21512 * 120.00290 * 359.71428 * 7 6 5 9 9 N 1.34773 * 119.99837 * 179.71825 * 7 6 5 10 10 C 1.46500 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47297 * 324.99623 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00124 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 N 1.46506 * 109.46949 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99462 * 274.99538 * 17 15 14 19 19 H 1.08000 * 120.00491 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99704 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00100 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46928 * 60.00291 * 22 20 18 24 24 H 1.48499 * 109.47165 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47284 * 300.00140 * 22 20 18 26 26 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 27 27 C 1.39613 * 118.21571 * 359.50233 * 6 5 4 28 28 C 1.38855 * 118.94950 * 0.24638 * 27 6 5 29 29 O 1.35681 * 119.62023 * 180.02562 * 28 27 6 30 30 N 1.31881 * 119.50998 * 305.00148 * 4 3 2 31 31 H 1.09005 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47173 * 299.99828 * 1 2 3 33 33 H 1.08994 * 109.47104 * 60.00244 * 1 2 3 34 34 H 1.09002 * 109.47173 * 240.00172 * 2 1 3 35 35 H 1.08998 * 109.47535 * 119.99980 * 2 1 3 36 36 H 1.09002 * 109.46933 * 60.00025 * 3 2 1 37 37 H 1.08998 * 109.46876 * 300.00383 * 3 2 1 38 38 H 1.08002 * 120.43353 * 0.02562 * 5 4 3 39 39 H 0.97002 * 119.99920 * 0.02562 * 9 7 6 40 40 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 41 41 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 42 42 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 43 43 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 44 44 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 46 46 H 0.97000 * 120.00279 * 94.99983 * 17 15 14 47 47 H 0.97000 * 119.99861 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.47839 * 300.00447 * 26 15 14 49 49 H 1.09000 * 109.47160 * 180.02562 * 26 15 14 50 50 H 1.08004 * 120.52304 * 180.27540 * 27 6 5 51 51 H 0.96692 * 114.00071 * 90.00477 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2265 2.1365 -0.9814 6 6 5.6257 2.1271 -0.9772 7 6 6.3944 2.8545 -2.0141 8 8 5.8100 3.4657 -2.8867 9 7 7.7418 2.8381 -1.9897 10 6 8.5018 3.5568 -3.0153 11 1 7.9710 3.5025 -3.9658 12 6 8.6583 5.0214 -2.6015 13 6 9.4515 5.7721 -3.6730 14 6 10.8340 5.1345 -3.8245 15 6 10.6776 3.6699 -4.2383 16 1 10.1464 3.6156 -5.1885 17 7 12.0014 3.0592 -4.3827 18 6 12.6873 3.1823 -5.5616 19 1 12.2525 3.7300 -6.3846 20 6 13.9418 2.6042 -5.6983 21 7 14.4720 1.9371 -4.6950 22 14 14.8778 2.7727 -7.3060 23 1 15.1122 4.2106 -7.5939 24 1 16.1816 2.0706 -7.1958 25 1 14.0834 2.1706 -8.4068 26 6 9.8844 2.9191 -3.1668 27 6 6.2781 1.4188 0.0338 28 6 5.5178 0.7520 0.9853 29 8 6.1377 0.0599 1.9741 30 7 4.1971 0.7841 0.9391 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 3.6852 2.6768 -1.7439 39 1 8.2083 2.3498 -1.2933 40 1 7.6734 5.4758 -2.4940 41 1 9.1892 5.0757 -1.6511 42 1 8.9203 5.7179 -4.6232 43 1 9.5626 6.8157 -3.3784 44 1 11.3993 5.6696 -4.5875 45 1 11.3653 5.1889 -2.8743 46 1 12.3920 2.5676 -3.6434 47 1 15.3488 1.5334 -4.7904 48 1 10.4156 2.9735 -2.2166 49 1 9.7733 1.8756 -3.4614 50 1 7.3569 1.3904 0.0752 51 1 6.3170 0.5828 2.7674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981374364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:09 Heat of formation + Delta-G solvation = -80.760584 kcal Electronic energy + Delta-G solvation = -29848.468401 eV Core-core repulsion = 25746.119579 eV Total energy + Delta-G solvation = -4102.348822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01504 -40.84868 -39.30535 -38.32828 -36.30657 -35.88773 -34.94859 -33.64837 -32.90249 -31.70100 -30.65538 -29.41000 -27.91973 -25.92760 -25.58782 -23.96808 -23.33535 -22.90791 -22.12591 -21.42706 -20.82727 -19.85888 -19.10042 -18.25894 -18.14989 -17.14696 -16.83785 -16.68808 -16.38848 -16.19329 -15.84985 -15.69913 -15.46587 -15.31810 -15.08986 -15.03695 -14.71850 -14.61016 -14.21534 -13.75006 -13.57103 -13.41706 -13.33537 -12.98688 -12.90625 -12.79715 -12.73510 -12.38871 -12.29757 -12.19532 -12.05883 -12.03758 -11.97570 -11.67805 -11.66370 -11.57421 -11.40411 -11.16846 -11.03863 -10.86476 -10.52407 -10.16484 -9.91839 -8.99471 -7.93627 -5.21281 -0.48455 -0.14820 1.47530 1.49577 1.55563 1.66860 1.87410 2.43349 2.56791 2.63669 3.30831 3.39411 3.42657 3.61538 3.82931 3.84241 3.85731 4.02530 4.06291 4.16127 4.20580 4.25428 4.30405 4.36052 4.40843 4.51326 4.56935 4.57573 4.65029 4.67898 4.76036 4.80066 4.87290 4.93430 4.99709 5.00578 5.09313 5.16150 5.20567 5.21970 5.33744 5.34560 5.37890 5.41385 5.48671 5.50520 5.53320 5.65580 6.28779 6.36325 6.55133 6.81062 7.00372 7.35480 8.11396 8.34854 9.29345 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.001877 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.330984 B =14910.371788 C =15385.130436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.069 4.069 4 C 0.151 3.849 5 C -0.130 4.130 6 C -0.075 4.075 7 C 0.560 3.440 8 O -0.561 6.561 9 N -0.702 5.702 10 C 0.158 3.842 11 H 0.073 0.927 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.177 3.823 16 H 0.037 0.963 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.280 1.280 26 C -0.117 4.117 27 C -0.156 4.156 28 C 0.310 3.690 29 O -0.487 6.487 30 N -0.502 5.502 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.155 0.845 39 H 0.413 0.587 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.054 0.946 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.167 0.833 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.650 1.346 15.434 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.106 4.106 4 C 0.013 3.987 5 C -0.151 4.151 6 C -0.086 4.086 7 C 0.347 3.653 8 O -0.440 6.440 9 N -0.353 5.353 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.167 4.167 15 C 0.068 3.932 16 H 0.055 0.945 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.207 1.207 26 C -0.155 4.155 27 C -0.177 4.177 28 C 0.131 3.869 29 O -0.297 6.297 30 N -0.223 5.223 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.173 0.827 39 H 0.251 0.749 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.184 0.816 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -26.413 0.897 14.904 30.341 hybrid contribution 2.025 0.177 -0.618 2.124 sum -24.388 1.073 14.286 28.285 Atomic orbital electron populations 1.21757 0.94168 1.02170 1.02551 1.21403 0.96796 0.95257 1.01830 1.20753 0.85943 0.98932 1.05014 1.21331 0.97839 0.90853 0.88673 1.22265 0.93149 0.99830 0.99857 1.20217 0.94622 0.98355 0.95384 1.18319 0.82528 0.80122 0.84367 1.90773 1.70238 1.44841 1.38175 1.45910 1.05360 1.52702 1.31346 1.20849 0.90888 0.91713 0.91198 0.90837 1.21819 1.00344 0.93718 0.99598 1.21413 0.94749 0.99471 0.98870 1.22099 0.96729 0.97200 1.00668 1.20310 0.85316 0.91637 0.95950 0.94529 1.42557 1.16835 1.63929 1.14159 1.19554 0.98330 1.26716 0.92464 0.90966 1.25486 0.98960 1.01392 1.00802 1.69795 1.17923 1.41581 1.32528 0.85291 0.77595 0.77566 0.79802 1.20505 1.22210 1.20678 1.21895 0.94008 0.99401 1.00224 1.22448 1.02873 0.97045 0.95372 1.19087 0.86654 0.90380 0.90789 1.84776 1.76643 1.39978 1.28308 1.66846 1.10470 1.18498 1.26450 0.92527 0.91932 0.91895 0.93009 0.92227 0.88514 0.88119 0.82689 0.74913 0.91728 0.90559 0.92253 0.90493 0.94037 0.92731 0.79420 0.94109 0.90402 0.92031 0.81575 0.71531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.11 -1.47 5.79 30.59 0.18 -1.29 16 3 C -0.07 -0.81 5.61 29.85 0.17 -0.64 16 4 C 0.15 2.57 6.18 42.50 0.26 2.83 16 5 C -0.13 -2.39 9.27 22.63 0.21 -2.18 16 6 C -0.07 -1.46 5.91 -19.90 -0.12 -1.58 16 7 C 0.56 13.24 7.76 86.88 0.67 13.91 16 8 O -0.56 -17.11 16.11 -3.75 -0.06 -17.17 16 9 N -0.70 -14.62 5.04 -445.11 -2.24 -16.86 16 10 C 0.16 4.00 2.45 44.99 0.11 4.11 16 11 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 12 C -0.12 -2.72 5.49 30.59 0.17 -2.55 16 13 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 14 C -0.13 -4.22 5.50 30.59 0.17 -4.05 16 15 C 0.18 6.64 2.77 44.99 0.12 6.76 16 16 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 17 N -0.74 -35.88 5.12 -322.94 -1.65 -37.53 16 18 C -0.24 -13.09 9.93 84.03 0.83 -12.25 16 19 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 22 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 C -0.12 -3.43 4.86 30.60 0.15 -3.28 16 27 C -0.16 -2.50 9.55 22.75 0.22 -2.28 16 28 C 0.31 5.44 7.74 84.79 0.66 6.10 16 29 O -0.49 -7.02 13.56 -89.99 -1.22 -8.24 16 30 N -0.50 -9.70 9.87 -297.16 -2.93 -12.63 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.93 7.94 -2.39 -0.02 0.91 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.87 7.86 -2.39 -0.02 0.85 16 38 H 0.16 2.68 7.62 -2.91 -0.02 2.65 16 39 H 0.41 6.39 6.74 -92.71 -0.63 5.77 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.37 19.41 7.80 -92.71 -0.72 18.69 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 48 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.17 1.84 6.53 -2.91 -0.02 1.82 16 51 H 0.42 1.71 9.06 -74.06 -0.67 1.04 16 Total: -1.00 -72.01 414.97 -1.70 -73.70 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -1.06 Total: 32.15 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.16 Total: -3.36 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -6.55 Total: -125.08 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.28 Total: -25.41 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.01 -1.70 -73.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981374364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.057 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds