Wall clock time and date at job start Wed Apr 1 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.53000 * 109.47235 * 240.00020 * 2 1 3 5 5 C 1.50703 * 109.46946 * 119.99555 * 2 1 3 6 6 C 1.35316 * 126.66102 * 60.00427 * 5 2 1 7 7 C 1.42278 * 103.91726 * 179.75655 * 6 5 2 8 8 C 1.48329 * 126.93412 * 180.21799 * 7 6 5 9 9 O 1.21498 * 120.00390 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00356 * 179.97438 * 10 8 7 12 12 C 1.51232 * 111.07830 * 281.64997 * 11 10 8 13 13 C 1.56591 * 104.17437 * 275.22938 * 12 11 10 14 14 C 1.56273 * 106.07021 * 353.42313 * 13 12 11 15 15 C 1.50511 * 101.76337 * 335.32426 * 14 13 12 16 16 H 1.08996 * 107.73499 * 293.23807 * 15 14 13 17 17 N 1.42697 * 128.18603 * 161.33545 * 15 14 13 18 18 C 1.36939 * 127.10277 * 28.25808 * 17 15 14 19 19 H 1.08005 * 119.99999 * 359.96779 * 18 17 15 20 20 C 1.38813 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47282 * 89.99293 * 22 20 18 24 24 H 1.48495 * 109.47336 * 209.99487 * 22 20 18 25 25 H 1.48506 * 109.46963 * 329.99800 * 22 20 18 26 26 C 1.49299 * 105.79454 * 208.24939 * 17 15 14 27 27 C 1.52142 * 111.09424 * 61.01776 * 11 10 8 28 28 N 1.30984 * 106.12493 * 0.23766 * 7 6 5 29 29 O 1.20904 * 111.43952 * 359.97438 * 28 7 6 30 30 H 1.08998 * 109.46792 * 300.00040 * 1 2 3 31 31 H 1.09002 * 109.47104 * 60.00162 * 1 2 3 32 32 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47140 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46994 * 299.99905 * 3 2 1 35 35 H 1.09001 * 109.46814 * 59.99719 * 3 2 1 36 36 H 1.09005 * 109.46919 * 299.99756 * 4 2 1 37 37 H 1.09002 * 109.47223 * 59.99892 * 4 2 1 38 38 H 1.08995 * 109.46977 * 180.02562 * 4 2 1 39 39 H 1.08002 * 128.04455 * 0.02562 * 6 5 2 40 40 H 0.97007 * 119.99659 * 0.02562 * 10 8 7 41 41 H 1.09008 * 110.40840 * 34.87698 * 12 11 10 42 42 H 1.08994 * 110.41010 * 157.31020 * 12 11 10 43 43 H 1.09003 * 110.44285 * 234.07804 * 13 12 11 44 44 H 1.08991 * 109.79621 * 112.43299 * 13 12 11 45 45 H 1.09001 * 110.97335 * 217.20151 * 14 13 12 46 46 H 1.09007 * 110.97057 * 93.43848 * 14 13 12 47 47 H 0.96995 * 119.99480 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.04871 * 249.39544 * 26 17 15 49 49 H 1.09003 * 110.04434 * 127.92356 * 26 17 15 50 50 H 1.09000 * 111.14587 * 191.86778 * 27 11 10 51 51 H 1.08999 * 111.15029 * 316.09182 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.7900 -1.9958 1.5769 7 6 2.4914 -2.1575 2.8042 8 6 2.5709 -3.3871 3.6300 9 8 1.9973 -4.3969 3.2730 10 7 3.2803 -3.3845 4.7760 11 6 3.3584 -4.5987 5.5920 12 6 2.0966 -4.7910 6.4031 13 6 2.3298 -3.9243 7.6863 14 6 3.8053 -3.4162 7.6028 15 6 4.4411 -4.4626 6.7275 16 1 4.4428 -5.4018 7.2807 17 7 5.6622 -4.3761 5.9942 18 6 6.7577 -3.6138 6.3007 19 1 6.7520 -2.9901 7.1824 20 6 7.8755 -3.6427 5.4782 21 7 7.8826 -4.4032 4.4039 22 14 9.3696 -2.6023 5.8959 23 1 10.2916 -3.3840 6.7588 24 1 10.0701 -2.2171 4.6446 25 1 8.9350 -1.3789 6.6168 26 6 5.4987 -5.2885 4.8238 27 6 4.0027 -5.7386 4.8172 28 7 3.0524 -1.0014 3.0577 29 8 2.8039 -0.1911 2.1955 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.2043 -2.7298 1.0434 40 1 3.7386 -2.5784 5.0609 41 1 1.2280 -4.4448 5.8428 42 1 1.9785 -5.8386 6.6799 43 1 2.1905 -4.5273 8.5836 44 1 1.6413 -3.0795 7.6913 45 1 4.2684 -3.3989 8.5894 46 1 3.8535 -2.4334 7.1336 47 1 8.6636 -4.4230 3.8290 48 1 6.1496 -6.1561 4.9326 49 1 5.7335 -4.7581 3.9009 50 1 3.8754 -6.6884 5.3366 51 1 3.6128 -5.7931 3.8008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991820432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:03 Heat of formation + Delta-G solvation = 55.896503 kcal Electronic energy + Delta-G solvation = -32333.102983 eV Core-core repulsion = 28236.680057 eV Total energy + Delta-G solvation = -4096.422926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.00828 -40.45916 -38.08891 -37.58611 -34.43293 -33.86670 -33.00161 -31.70145 -30.83399 -29.83863 -27.71024 -27.62658 -26.95562 -25.99361 -24.49549 -23.94104 -23.18354 -21.57229 -20.54358 -19.91838 -19.39620 -18.67629 -17.68722 -17.30005 -16.61781 -16.46469 -15.75871 -15.03391 -14.78585 -14.61155 -14.42789 -14.38418 -14.32784 -13.92367 -13.86125 -13.62095 -13.45064 -12.70642 -12.62970 -12.58568 -12.32776 -12.00704 -11.98327 -11.82274 -11.41855 -11.41538 -11.38686 -11.37303 -11.14839 -11.00225 -10.92878 -10.84265 -10.54553 -10.33105 -10.26067 -10.05533 -9.99982 -9.77385 -9.69462 -9.43298 -9.21609 -8.66000 -8.53133 -6.86257 -5.73839 -3.08588 1.28356 1.76298 2.89271 3.32242 3.39034 3.44261 3.46008 3.53986 4.11616 4.32829 4.45413 4.53838 4.55612 4.61293 4.84342 5.04023 5.18527 5.20386 5.22732 5.27394 5.37721 5.40736 5.43931 5.48072 5.53328 5.56186 5.59549 5.66134 5.71009 5.79891 5.80853 5.91344 5.93351 5.94076 5.96807 5.98592 6.11558 6.23333 6.27464 6.33737 6.40135 6.48441 6.65984 6.82644 6.87658 7.12215 7.51333 7.60762 7.77988 7.87806 8.18112 8.20156 8.53849 9.13545 9.80311 10.48785 11.38423 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.003683 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.358434 B = 7600.253522 C = 9138.954335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.031 4.031 6 C -0.179 4.179 7 C -0.019 4.019 8 C 0.597 3.403 9 O -0.533 6.533 10 N -0.670 5.670 11 C 0.128 3.872 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.161 3.839 16 H 0.025 0.975 17 N -0.583 5.583 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.179 3.821 27 C -0.143 4.143 28 N -0.327 5.327 29 O 0.124 5.876 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.176 0.824 40 H 0.408 0.592 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.249 7.941 -7.175 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.094 4.094 6 C -0.201 4.201 7 C -0.178 4.178 8 C 0.380 3.620 9 O -0.409 6.409 10 N -0.320 5.320 11 C 0.041 3.959 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.156 4.156 15 C 0.050 3.950 16 H 0.042 0.958 17 N -0.306 5.306 18 C -0.359 4.359 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.055 3.945 27 C -0.181 4.181 28 N -0.027 5.027 29 O 0.048 5.952 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.194 0.806 40 H 0.244 0.756 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.593 7.637 -6.446 18.521 hybrid contribution 0.763 0.376 -0.180 0.870 sum -14.830 8.013 -6.625 18.111 Atomic orbital electron populations 1.21943 0.92166 1.02947 1.02766 1.19158 0.95967 0.95301 0.87974 1.21912 1.02128 0.93708 1.02778 1.21957 1.02030 1.00635 0.95375 1.24396 0.97008 0.93822 0.94181 1.22300 1.04695 0.96640 0.96454 1.23661 1.01272 0.94703 0.98191 1.16832 0.79737 0.84928 0.80528 1.90729 1.46896 1.32050 1.71243 1.45564 1.49596 1.15300 1.21500 1.21672 0.96169 0.85315 0.92783 1.22059 0.97109 1.00306 0.95594 1.22967 0.96197 0.98902 0.97411 1.21870 0.94531 0.99147 1.00019 1.20821 0.86443 0.96626 0.91106 0.95833 1.43659 1.10774 1.50387 1.25787 1.19004 0.91018 1.18772 1.07156 0.90303 1.24791 0.98251 0.99757 0.97200 1.69923 1.29368 1.41831 1.15321 0.86163 0.82945 0.79811 0.77098 1.21600 1.21732 1.20640 1.22008 0.88578 0.92834 0.91094 1.22849 0.98470 0.96025 1.00802 1.74243 1.17601 1.00552 1.10297 1.84790 1.50917 1.35220 1.24263 0.91963 0.91120 0.91776 0.91607 0.91427 0.91738 0.91741 0.91115 0.91776 0.80613 0.75604 0.91560 0.90881 0.91724 0.92274 0.91528 0.91717 0.93718 0.94580 0.91877 0.91479 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.36 37.16 0.31 -0.62 16 2 C 0.02 0.14 0.94 -155.65 -0.15 -0.01 16 3 C -0.15 -1.07 8.07 37.16 0.30 -0.77 16 4 C -0.14 -1.05 8.36 37.16 0.31 -0.74 16 5 C -0.03 -0.37 5.76 -35.35 -0.20 -0.57 16 6 C -0.18 -2.45 10.40 -39.07 -0.41 -2.86 16 7 C -0.02 -0.32 7.19 -82.53 -0.59 -0.92 16 8 C 0.60 11.44 7.24 -12.11 -0.09 11.36 16 9 O -0.53 -10.93 15.07 5.37 0.08 -10.85 16 10 N -0.67 -12.94 4.48 -47.35 -0.21 -13.16 16 11 C 0.13 2.43 0.42 -130.70 -0.06 2.37 16 12 C -0.11 -1.78 6.24 -25.69 -0.16 -1.94 16 13 C -0.12 -1.67 6.95 -23.04 -0.16 -1.83 16 14 C -0.12 -2.01 6.46 -26.22 -0.17 -2.18 16 15 C 0.16 3.29 2.65 -68.73 -0.18 3.11 16 16 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 17 N -0.58 -14.55 3.16 -162.69 -0.51 -15.06 16 18 C -0.23 -6.31 10.29 -15.06 -0.15 -6.47 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -27.03 10.55 55.49 0.59 -26.44 16 22 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.18 4.43 5.33 -0.76 0.00 4.43 16 27 C -0.14 -2.94 6.10 -25.44 -0.16 -3.10 16 28 N -0.33 -5.59 11.84 33.29 0.39 -5.20 16 29 O 0.12 1.79 10.65 17.24 0.18 1.97 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.41 8.19 7.32 -40.82 -0.30 7.89 16 41 H 0.07 1.08 7.73 -51.92 -0.40 0.68 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.15 7.17 -51.92 -0.37 0.77 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.04 0.97 7.98 -51.93 -0.41 0.55 16 49 H 0.06 1.77 7.05 -51.93 -0.37 1.40 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 51 H 0.08 1.65 6.27 -51.93 -0.33 1.32 16 LS Contribution 402.35 15.07 6.06 6.06 Total: -1.00 -31.50 402.35 -8.56 -40.06 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.47 Total: 6.36 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.65 Total: -0.91 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.25 Total: -59.85 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.26 Total: -8.88 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.50 -8.56 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991820432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.959 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds