Wall clock time and date at job start Wed Apr 1 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.53000 * 109.47235 * 240.00020 * 2 1 3 5 5 C 1.50703 * 109.46946 * 119.99555 * 2 1 3 6 6 C 1.35316 * 126.66102 * 60.00427 * 5 2 1 7 7 C 1.42278 * 103.91726 * 179.75655 * 6 5 2 8 8 C 1.48329 * 126.93412 * 180.21799 * 7 6 5 9 9 O 1.21498 * 120.00390 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00356 * 179.97438 * 10 8 7 12 12 C 1.51232 * 111.07830 * 281.64997 * 11 10 8 13 13 C 1.56591 * 104.17437 * 275.22938 * 12 11 10 14 14 C 1.56273 * 106.07021 * 353.42313 * 13 12 11 15 15 C 1.50511 * 101.76337 * 335.32426 * 14 13 12 16 16 H 1.08996 * 107.73499 * 293.23807 * 15 14 13 17 17 N 1.42697 * 128.18603 * 161.33545 * 15 14 13 18 18 C 1.36939 * 127.10277 * 28.25808 * 17 15 14 19 19 H 1.08005 * 119.99999 * 359.96779 * 18 17 15 20 20 C 1.38813 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47282 * 89.99293 * 22 20 18 24 24 H 1.48495 * 109.47336 * 209.99487 * 22 20 18 25 25 H 1.48506 * 109.46963 * 329.99800 * 22 20 18 26 26 C 1.49299 * 105.79454 * 208.24939 * 17 15 14 27 27 C 1.52142 * 111.09424 * 61.01776 * 11 10 8 28 28 N 1.30984 * 106.12493 * 0.23766 * 7 6 5 29 29 O 1.20904 * 111.43952 * 359.97438 * 28 7 6 30 30 H 1.08998 * 109.46792 * 300.00040 * 1 2 3 31 31 H 1.09002 * 109.47104 * 60.00162 * 1 2 3 32 32 H 1.08997 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47140 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46994 * 299.99905 * 3 2 1 35 35 H 1.09001 * 109.46814 * 59.99719 * 3 2 1 36 36 H 1.09005 * 109.46919 * 299.99756 * 4 2 1 37 37 H 1.09002 * 109.47223 * 59.99892 * 4 2 1 38 38 H 1.08995 * 109.46977 * 180.02562 * 4 2 1 39 39 H 1.08002 * 128.04455 * 0.02562 * 6 5 2 40 40 H 0.97007 * 119.99659 * 0.02562 * 10 8 7 41 41 H 1.09008 * 110.40840 * 34.87698 * 12 11 10 42 42 H 1.08994 * 110.41010 * 157.31020 * 12 11 10 43 43 H 1.09003 * 110.44285 * 234.07804 * 13 12 11 44 44 H 1.08991 * 109.79621 * 112.43299 * 13 12 11 45 45 H 1.09001 * 110.97335 * 217.20151 * 14 13 12 46 46 H 1.09007 * 110.97057 * 93.43848 * 14 13 12 47 47 H 0.96995 * 119.99480 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.04871 * 249.39544 * 26 17 15 49 49 H 1.09003 * 110.04434 * 127.92356 * 26 17 15 50 50 H 1.09000 * 111.14587 * 191.86778 * 27 11 10 51 51 H 1.08999 * 111.15029 * 316.09182 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.7900 -1.9958 1.5769 7 6 2.4914 -2.1575 2.8042 8 6 2.5709 -3.3871 3.6300 9 8 1.9973 -4.3969 3.2730 10 7 3.2803 -3.3845 4.7760 11 6 3.3584 -4.5987 5.5920 12 6 2.0966 -4.7910 6.4031 13 6 2.3298 -3.9243 7.6863 14 6 3.8053 -3.4162 7.6028 15 6 4.4411 -4.4626 6.7275 16 1 4.4428 -5.4018 7.2807 17 7 5.6622 -4.3761 5.9942 18 6 6.7577 -3.6138 6.3007 19 1 6.7520 -2.9901 7.1824 20 6 7.8755 -3.6427 5.4782 21 7 7.8826 -4.4032 4.4039 22 14 9.3696 -2.6023 5.8959 23 1 10.2916 -3.3840 6.7588 24 1 10.0701 -2.2171 4.6446 25 1 8.9350 -1.3789 6.6168 26 6 5.4987 -5.2885 4.8238 27 6 4.0027 -5.7386 4.8172 28 7 3.0524 -1.0014 3.0577 29 8 2.8039 -0.1911 2.1955 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 1.2043 -2.7298 1.0434 40 1 3.7386 -2.5784 5.0609 41 1 1.2280 -4.4448 5.8428 42 1 1.9785 -5.8386 6.6799 43 1 2.1905 -4.5273 8.5836 44 1 1.6413 -3.0795 7.6913 45 1 4.2684 -3.3989 8.5894 46 1 3.8535 -2.4334 7.1336 47 1 8.6636 -4.4230 3.8290 48 1 6.1496 -6.1561 4.9326 49 1 5.7335 -4.7581 3.9009 50 1 3.8754 -6.6884 5.3366 51 1 3.6128 -5.7931 3.8008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991820432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:02 Heat of formation + Delta-G solvation = 37.561743 kcal Electronic energy + Delta-G solvation = -32333.898038 eV Core-core repulsion = 28236.680057 eV Total energy + Delta-G solvation = -4097.217981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.21646 -42.03156 -39.64471 -38.28842 -36.22720 -35.14855 -34.44737 -33.60919 -32.01196 -31.53979 -28.61441 -28.33507 -28.16347 -27.53080 -26.10315 -25.63428 -24.24164 -22.77073 -22.18662 -21.36510 -20.83522 -20.19857 -18.90635 -18.42872 -18.28174 -17.92375 -17.44112 -16.49581 -16.29927 -16.01528 -15.84185 -15.75378 -15.34047 -15.10483 -14.96856 -14.94192 -14.61855 -14.21043 -14.11120 -13.66371 -13.23263 -13.20551 -13.10173 -13.02714 -12.90626 -12.72919 -12.64885 -12.56936 -12.27678 -12.24323 -12.18274 -12.10567 -12.02504 -11.85181 -11.79164 -11.63472 -11.55994 -11.41283 -11.38898 -10.86408 -10.75568 -10.48144 -10.07893 -8.91866 -7.88289 -5.24025 0.04719 0.63680 1.42706 1.44155 1.52442 1.81547 1.98307 2.11702 2.46255 2.88191 3.02238 3.30844 3.35831 3.69794 3.81041 3.81210 3.93848 3.95769 4.01627 4.04098 4.19427 4.25870 4.33502 4.37130 4.41064 4.50975 4.57517 4.73798 4.78159 4.79763 4.82088 4.88281 4.88749 4.90100 5.00403 5.00567 5.01759 5.05464 5.10340 5.16969 5.21893 5.28562 5.39447 5.42206 5.43355 5.49775 5.52307 5.58465 5.68874 6.13507 6.35857 6.92529 7.00012 7.06964 7.72505 8.44549 9.23605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.003683 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.358434 B = 7600.253522 C = 9138.954335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.012 4.012 6 C -0.186 4.186 7 C -0.046 4.046 8 C 0.594 3.406 9 O -0.551 6.551 10 N -0.673 5.673 11 C 0.134 3.866 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.114 4.114 15 C 0.146 3.854 16 H 0.027 0.973 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.063 4.063 21 N -0.951 5.951 22 Si 0.973 3.027 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.191 3.809 27 C -0.131 4.131 28 N -0.354 5.354 29 O 0.128 5.872 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.192 0.808 40 H 0.402 0.598 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.244 0.756 48 H 0.004 0.996 49 H 0.021 0.979 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.509 9.391 -6.852 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 C -0.206 4.206 4 C -0.200 4.200 5 C -0.075 4.075 6 C -0.208 4.208 7 C -0.204 4.204 8 C 0.379 3.621 9 O -0.429 6.429 10 N -0.322 5.322 11 C 0.047 3.953 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.152 4.152 15 C 0.037 3.963 16 H 0.044 0.956 17 N -0.321 5.321 18 C -0.362 4.362 19 H 0.105 0.895 20 C -0.256 4.256 21 N -0.600 5.600 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.192 1.192 26 C 0.066 3.934 27 C -0.170 4.170 28 N -0.053 5.053 29 O 0.051 5.949 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.209 0.791 40 H 0.238 0.762 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.022 0.978 49 H 0.039 0.961 50 H 0.106 0.894 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.886 9.085 -6.074 20.961 hybrid contribution 1.452 -0.051 -0.345 1.493 sum -16.434 9.035 -6.419 19.822 Atomic orbital electron populations 1.21966 0.90393 1.03337 1.03913 1.19458 0.97188 0.95528 0.86181 1.21946 1.01468 0.93149 1.04017 1.21996 1.01224 1.00911 0.95890 1.25192 0.94785 0.93411 0.94113 1.22510 1.05014 0.97776 0.95542 1.23637 1.02980 0.94274 0.99515 1.17078 0.79190 0.85465 0.80396 1.90697 1.47697 1.32875 1.71602 1.45632 1.49600 1.15094 1.21912 1.21728 0.97374 0.84328 0.91907 1.22074 0.94964 1.01882 0.95620 1.22906 0.94084 0.99514 0.97443 1.21893 0.96221 0.97627 0.99462 1.21085 0.84992 0.98094 0.92122 0.95565 1.43783 1.12002 1.50035 1.26266 1.19394 0.91649 1.18235 1.06933 0.89472 1.25598 1.01175 1.01410 0.97449 1.70151 1.29612 1.43739 1.16495 0.85149 0.79518 0.78702 0.76424 1.21281 1.22623 1.19153 1.21664 0.90885 0.91155 0.89653 1.22698 0.95448 0.97790 1.01014 1.74230 1.18525 1.00902 1.11637 1.84749 1.50936 1.34784 1.24443 0.92280 0.88544 0.91818 0.92732 0.88802 0.91957 0.91884 0.88376 0.93129 0.79061 0.76233 0.91654 0.89158 0.89013 0.90597 0.90554 0.92688 0.94632 0.97751 0.96086 0.89367 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.36 71.98 0.60 -0.84 16 2 C 0.02 0.25 0.94 -52.92 -0.05 0.20 16 3 C -0.15 -1.84 8.07 71.98 0.58 -1.25 16 4 C -0.14 -1.80 8.36 71.98 0.60 -1.20 16 5 C -0.01 -0.27 5.76 25.01 0.14 -0.12 16 6 C -0.19 -5.07 10.40 22.60 0.24 -4.83 16 7 C -0.05 -1.62 7.19 42.96 0.31 -1.32 16 8 C 0.59 23.30 7.24 86.93 0.63 23.93 16 9 O -0.55 -22.89 15.07 -3.71 -0.06 -22.94 16 10 N -0.67 -26.47 4.48 -422.01 -1.89 -28.36 16 11 C 0.13 5.03 0.42 4.33 0.00 5.03 16 12 C -0.11 -3.15 6.24 31.27 0.20 -2.96 16 13 C -0.10 -2.57 6.95 32.99 0.23 -2.34 16 14 C -0.11 -3.69 6.46 30.93 0.20 -3.49 16 15 C 0.15 5.92 2.65 46.47 0.12 6.04 16 16 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 17 N -0.60 -30.56 3.16 -668.62 -2.11 -32.67 16 18 C -0.23 -12.96 10.29 84.03 0.86 -12.09 16 19 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 20 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 21 N -0.95 -58.69 10.55 21.65 0.23 -58.46 16 22 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.19 9.96 5.33 86.96 0.46 10.42 16 27 C -0.13 -5.49 6.10 31.43 0.19 -5.30 16 28 N -0.35 -12.39 11.84 -49.52 -0.59 -12.97 16 29 O 0.13 3.71 10.65 71.88 0.77 4.47 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.69 8.03 -2.39 -0.02 0.67 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.82 8.03 -2.38 -0.02 0.80 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.40 16.63 7.32 -92.70 -0.68 15.95 16 41 H 0.06 1.98 7.73 -2.38 -0.02 1.96 16 42 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.05 1.89 7.17 -2.38 -0.02 1.88 16 47 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.00 0.24 7.98 -2.39 -0.02 0.23 16 49 H 0.02 1.25 7.05 -2.39 -0.02 1.23 16 50 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 51 H 0.07 2.95 6.27 -2.39 -0.01 2.94 16 Total: -1.00 -71.83 402.35 4.41 -67.42 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.25 Total: 28.22 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.79 Total: 6.69 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -4.36 Total: -132.47 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.71 Total: -18.47 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -71.83 4.41 -67.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991820432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.978 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds