Wall clock time and date at job start Wed Apr 1 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46888 * 2 1 4 4 C 1.50703 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.30615 * 125.42365 * 89.97859 * 4 3 2 6 6 C 1.33689 * 108.99692 * 179.74988 * 5 4 3 7 7 C 1.50698 * 126.27602 * 180.27539 * 6 5 4 8 8 C 1.36341 * 107.45332 * 0.42828 * 6 5 4 9 9 C 1.46723 * 126.64912 * 179.83928 * 8 6 5 10 10 O 1.21685 * 119.99594 * 359.71204 * 9 8 6 11 11 N 1.34780 * 120.00418 * 179.71700 * 9 8 6 12 12 C 1.46498 * 119.99809 * 180.02562 * 11 9 8 13 13 C 1.51229 * 111.47176 * 68.10149 * 12 11 9 14 14 C 1.55794 * 104.61902 * 84.06326 * 13 12 11 15 15 C 1.56289 * 105.88759 * 7.24345 * 14 13 12 16 16 C 1.50514 * 101.78910 * 24.26324 * 15 14 13 17 17 H 1.08996 * 108.13248 * 66.22272 * 16 15 14 18 18 N 1.42700 * 128.17158 * 198.64251 * 16 15 14 19 19 C 1.36932 * 127.10974 * 331.77334 * 18 16 15 20 20 H 1.08009 * 119.99585 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00537 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99744 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46983 * 60.00043 * 23 21 19 25 25 H 1.48503 * 109.46831 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47057 * 299.99733 * 23 21 19 27 27 C 1.49307 * 105.79174 * 151.74261 * 18 16 15 28 28 C 1.52135 * 111.09307 * 288.30455 * 12 11 9 29 29 O 1.33670 * 125.42057 * 270.00210 * 4 3 2 30 30 H 1.09003 * 109.46866 * 299.99526 * 1 2 3 31 31 H 1.08998 * 109.46895 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46731 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46866 * 240.00473 * 2 1 3 34 34 H 1.08994 * 109.47203 * 120.00530 * 2 1 3 35 35 H 1.09003 * 109.46980 * 60.00544 * 3 2 1 36 36 H 1.08998 * 109.47467 * 299.99791 * 3 2 1 37 37 H 1.09010 * 109.46632 * 270.18488 * 7 6 5 38 38 H 1.08997 * 109.47317 * 30.18325 * 7 6 5 39 39 H 1.09002 * 109.47708 * 150.19339 * 7 6 5 40 40 H 0.96993 * 119.99423 * 359.97438 * 11 9 8 41 41 H 1.09001 * 110.40332 * 202.84267 * 13 12 11 42 42 H 1.08992 * 110.40869 * 325.16294 * 13 12 11 43 43 H 1.08997 * 110.19423 * 248.13905 * 14 13 12 44 44 H 1.09002 * 110.17104 * 126.33618 * 14 13 12 45 45 H 1.09002 * 110.97072 * 266.12667 * 15 14 13 46 46 H 1.09003 * 110.97182 * 142.40076 * 15 14 13 47 47 H 0.96995 * 119.99964 * 179.97438 * 22 21 19 48 48 H 1.08991 * 110.04996 * 110.60342 * 27 18 16 49 49 H 1.08999 * 110.04295 * 232.02685 * 27 18 16 50 50 H 1.09004 * 111.15107 * 168.13153 * 28 12 11 51 51 H 1.09005 * 111.18511 * 43.93077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3036 1.4422 -1.0653 6 6 5.5861 1.4478 -0.6878 7 6 6.7845 1.4553 -1.6015 8 6 5.6112 1.4419 0.6754 9 6 6.8042 1.4415 1.5294 10 8 7.9123 1.4416 1.0266 11 7 6.6729 1.4411 2.8708 12 6 7.8642 1.4413 3.7234 13 6 8.6193 2.7474 3.6191 14 6 7.9001 3.6985 4.6218 15 6 6.8706 2.8095 5.3915 16 6 7.4807 1.4407 5.2509 17 1 8.4197 1.4294 5.8042 18 7 6.8495 0.1722 5.4201 19 6 5.7788 -0.1172 6.2231 20 1 5.3218 0.6618 6.8154 21 6 5.2806 -1.4118 6.2760 22 7 5.8372 -2.3611 5.5539 23 14 3.8195 -1.8064 7.3710 24 1 2.6522 -0.9896 6.9520 25 1 3.4841 -3.2478 7.2484 26 1 4.1605 -1.4952 8.7825 27 6 7.5971 -0.7743 4.5401 28 6 8.5694 0.0940 3.6791 29 8 4.3222 1.4422 1.0883 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 7.0764 0.4294 -1.8263 38 1 6.5324 1.9725 -2.5272 39 1 7.6117 1.9693 -1.1118 40 1 5.7896 1.4414 3.2715 41 1 9.6610 2.6082 3.9080 42 1 8.5562 3.1430 2.6055 43 1 7.3821 4.4916 4.0826 44 1 8.6217 4.1260 5.3180 45 1 5.8896 2.8499 4.9182 46 1 6.8083 3.1031 6.4394 47 1 5.4894 -3.2658 5.5911 48 1 8.1643 -1.4800 5.1470 49 1 6.9027 -1.3113 3.8940 50 1 9.5565 0.1515 4.1380 51 1 8.6344 -0.2832 2.6585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992399119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:17 Heat of formation + Delta-G solvation = 10.545771 kcal Electronic energy + Delta-G solvation = -32497.157205 eV Core-core repulsion = 28398.767724 eV Total energy + Delta-G solvation = -4098.389481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.36596 -40.49125 -38.14659 -35.57821 -35.20371 -34.46902 -33.09806 -31.84676 -31.45555 -29.95117 -28.49831 -27.21727 -26.98385 -25.68719 -24.10393 -22.92633 -22.00263 -21.31414 -20.66054 -20.47324 -19.67548 -18.80623 -17.92869 -16.83914 -16.52961 -15.98341 -15.82996 -15.33611 -14.88662 -14.71226 -14.55926 -14.28751 -14.09797 -13.96053 -13.65317 -13.34807 -13.19030 -12.98702 -12.66947 -12.49447 -12.37808 -12.26005 -11.97194 -11.86363 -11.57805 -11.46923 -11.42223 -11.05450 -10.99814 -10.95982 -10.89439 -10.85222 -10.75876 -10.55501 -10.35806 -10.10305 -10.02413 -9.80448 -9.73112 -9.28023 -8.83963 -8.71244 -8.48221 -6.92344 -5.79381 -3.14571 0.94487 2.43208 2.50000 3.34286 3.35352 3.39437 3.40701 3.48508 3.86929 4.40220 4.56249 4.67382 4.71457 4.75458 4.89156 5.06599 5.17892 5.20995 5.25221 5.37211 5.43002 5.51023 5.52234 5.56605 5.62955 5.68107 5.71375 5.76466 5.80255 5.87832 5.89074 5.93214 5.96016 6.00115 6.05600 6.09867 6.19047 6.24964 6.32303 6.36236 6.37479 6.44600 6.59570 6.76520 6.84038 7.05827 7.46162 7.54677 7.58644 7.72420 7.91495 8.14433 8.44001 9.07911 9.74546 10.42993 11.32702 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.004808 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.112571 B = 5822.423469 C = 8255.215281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.025 4.025 4 C 0.215 3.785 5 N -0.489 5.489 6 C 0.070 3.930 7 C -0.076 4.076 8 C -0.106 4.106 9 C 0.606 3.394 10 O -0.524 6.524 11 N -0.673 5.673 12 C 0.128 3.872 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.115 4.115 16 C 0.160 3.840 17 H 0.025 0.975 18 N -0.584 5.584 19 C -0.234 4.234 20 H 0.079 0.921 21 C -0.002 4.002 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.177 3.823 28 C -0.139 4.139 29 O -0.182 6.182 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.408 0.592 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.254 0.746 48 H 0.037 0.963 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 9.678 -10.436 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.063 4.063 4 C 0.010 3.990 5 N -0.219 5.219 6 C -0.055 4.055 7 C -0.134 4.134 8 C -0.161 4.161 9 C 0.391 3.609 10 O -0.403 6.403 11 N -0.322 5.322 12 C 0.041 3.959 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.154 4.154 16 C 0.050 3.950 17 H 0.042 0.958 18 N -0.307 5.307 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.054 3.946 28 C -0.178 4.178 29 O -0.068 6.068 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.244 0.756 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.120 9.440 -11.197 14.974 hybrid contribution -1.037 -0.434 1.516 1.887 sum -4.157 9.006 -9.681 13.861 Atomic orbital electron populations 1.21742 0.94514 1.02379 1.02079 1.21561 0.96591 0.94488 1.03633 1.20265 0.80802 0.99874 1.05372 1.26460 0.96337 0.97467 0.78762 1.70286 1.01611 1.20073 1.29956 1.21992 0.93344 0.98813 0.91307 1.20337 0.92314 1.03571 0.97129 1.23163 0.82521 1.15184 0.95252 1.16304 0.85180 0.77545 0.81896 1.90798 1.23437 1.52067 1.74018 1.45636 1.10835 1.71565 1.04208 1.21646 0.85968 0.94259 0.94065 1.21892 0.98961 0.94484 0.99699 1.22841 0.97687 0.97577 0.97402 1.21846 0.98449 0.95114 0.99976 1.20849 0.95416 0.87974 0.90811 0.95793 1.43672 1.34863 1.02255 1.49922 1.18959 1.05024 0.94183 1.17986 0.90332 1.24794 0.99464 0.95864 0.99822 1.69905 1.42316 1.01253 1.42957 0.86250 0.82344 0.77187 0.80261 1.21150 1.21611 1.21115 1.22026 0.91586 0.90084 0.90943 1.22807 0.98799 0.95088 1.01092 1.84504 1.16241 1.68922 1.37107 0.92256 0.92427 0.92088 0.91006 0.90894 0.88513 0.87507 0.90224 0.90886 0.88649 0.75557 0.90839 0.91175 0.92252 0.91792 0.91727 0.91622 0.93587 0.94523 0.91742 0.91359 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.03 -0.25 5.84 -27.88 -0.16 -0.41 16 4 C 0.22 3.07 7.57 -12.79 -0.10 2.97 16 5 N -0.49 -7.54 11.26 -7.07 -0.08 -7.62 16 6 C 0.07 1.11 7.16 -82.47 -0.59 0.52 16 7 C -0.08 -1.01 9.87 36.00 0.36 -0.66 16 8 C -0.11 -1.82 7.18 -36.84 -0.26 -2.09 16 9 C 0.61 11.00 7.11 -12.83 -0.09 10.91 16 10 O -0.52 -9.91 12.95 5.20 0.07 -9.84 16 11 N -0.67 -12.32 4.39 -47.85 -0.21 -12.53 16 12 C 0.13 2.32 0.40 -130.71 -0.05 2.27 16 13 C -0.11 -1.72 6.04 -26.13 -0.16 -1.88 16 14 C -0.12 -1.62 6.94 -23.47 -0.16 -1.78 16 15 C -0.12 -1.90 6.46 -26.21 -0.17 -2.07 16 16 C 0.16 3.14 2.64 -68.72 -0.18 2.96 16 17 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 18 N -0.58 -13.98 3.12 -162.68 -0.51 -14.49 16 19 C -0.23 -6.13 10.29 -15.06 -0.15 -6.29 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -26.19 10.55 55.49 0.59 -25.60 16 23 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.18 4.22 5.33 -0.75 0.00 4.21 16 28 C -0.14 -2.72 6.19 -25.44 -0.16 -2.88 16 29 O -0.18 -3.00 10.57 4.39 0.05 -2.95 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.32 6.47 -51.93 -0.34 0.98 16 40 H 0.41 7.83 7.60 -40.82 -0.31 7.52 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.12 6.86 -51.93 -0.36 0.76 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.09 7.38 -51.93 -0.38 0.70 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.04 0.95 7.98 -51.93 -0.41 0.53 16 49 H 0.06 1.73 7.05 -51.93 -0.37 1.36 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.07 1.38 7.18 -51.93 -0.37 1.01 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -30.25 402.64 -9.25 -39.49 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.42 Total: 7.62 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.78 Total: 3.48 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.21 Total: -60.24 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.11 Total: -12.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.25 -9.25 -39.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992399119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.040 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds