Wall clock time and date at job start Wed Apr 1 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46888 * 2 1 4 4 C 1.50703 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.30615 * 125.42365 * 89.97859 * 4 3 2 6 6 C 1.33689 * 108.99692 * 179.74988 * 5 4 3 7 7 C 1.50698 * 126.27602 * 180.27539 * 6 5 4 8 8 C 1.36341 * 107.45332 * 0.42828 * 6 5 4 9 9 C 1.46723 * 126.64912 * 179.83928 * 8 6 5 10 10 O 1.21685 * 119.99594 * 359.71204 * 9 8 6 11 11 N 1.34780 * 120.00418 * 179.71700 * 9 8 6 12 12 C 1.46498 * 119.99809 * 180.02562 * 11 9 8 13 13 C 1.51229 * 111.47176 * 68.10149 * 12 11 9 14 14 C 1.55794 * 104.61902 * 84.06326 * 13 12 11 15 15 C 1.56289 * 105.88759 * 7.24345 * 14 13 12 16 16 C 1.50514 * 101.78910 * 24.26324 * 15 14 13 17 17 H 1.08996 * 108.13248 * 66.22272 * 16 15 14 18 18 N 1.42700 * 128.17158 * 198.64251 * 16 15 14 19 19 C 1.36932 * 127.10974 * 331.77334 * 18 16 15 20 20 H 1.08009 * 119.99585 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00537 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99744 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46983 * 60.00043 * 23 21 19 25 25 H 1.48503 * 109.46831 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47057 * 299.99733 * 23 21 19 27 27 C 1.49307 * 105.79174 * 151.74261 * 18 16 15 28 28 C 1.52135 * 111.09307 * 288.30455 * 12 11 9 29 29 O 1.33670 * 125.42057 * 270.00210 * 4 3 2 30 30 H 1.09003 * 109.46866 * 299.99526 * 1 2 3 31 31 H 1.08998 * 109.46895 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46731 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46866 * 240.00473 * 2 1 3 34 34 H 1.08994 * 109.47203 * 120.00530 * 2 1 3 35 35 H 1.09003 * 109.46980 * 60.00544 * 3 2 1 36 36 H 1.08998 * 109.47467 * 299.99791 * 3 2 1 37 37 H 1.09010 * 109.46632 * 270.18488 * 7 6 5 38 38 H 1.08997 * 109.47317 * 30.18325 * 7 6 5 39 39 H 1.09002 * 109.47708 * 150.19339 * 7 6 5 40 40 H 0.96993 * 119.99423 * 359.97438 * 11 9 8 41 41 H 1.09001 * 110.40332 * 202.84267 * 13 12 11 42 42 H 1.08992 * 110.40869 * 325.16294 * 13 12 11 43 43 H 1.08997 * 110.19423 * 248.13905 * 14 13 12 44 44 H 1.09002 * 110.17104 * 126.33618 * 14 13 12 45 45 H 1.09002 * 110.97072 * 266.12667 * 15 14 13 46 46 H 1.09003 * 110.97182 * 142.40076 * 15 14 13 47 47 H 0.96995 * 119.99964 * 179.97438 * 22 21 19 48 48 H 1.08991 * 110.04996 * 110.60342 * 27 18 16 49 49 H 1.08999 * 110.04295 * 232.02685 * 27 18 16 50 50 H 1.09004 * 111.15107 * 168.13153 * 28 12 11 51 51 H 1.09005 * 111.18511 * 43.93077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3036 1.4422 -1.0653 6 6 5.5861 1.4478 -0.6878 7 6 6.7845 1.4553 -1.6015 8 6 5.6112 1.4419 0.6754 9 6 6.8042 1.4415 1.5294 10 8 7.9123 1.4416 1.0266 11 7 6.6729 1.4411 2.8708 12 6 7.8642 1.4413 3.7234 13 6 8.6193 2.7474 3.6191 14 6 7.9001 3.6985 4.6218 15 6 6.8706 2.8095 5.3915 16 6 7.4807 1.4407 5.2509 17 1 8.4197 1.4294 5.8042 18 7 6.8495 0.1722 5.4201 19 6 5.7788 -0.1172 6.2231 20 1 5.3218 0.6618 6.8154 21 6 5.2806 -1.4118 6.2760 22 7 5.8372 -2.3611 5.5539 23 14 3.8195 -1.8064 7.3710 24 1 2.6522 -0.9896 6.9520 25 1 3.4841 -3.2478 7.2484 26 1 4.1605 -1.4952 8.7825 27 6 7.5971 -0.7743 4.5401 28 6 8.5694 0.0940 3.6791 29 8 4.3222 1.4422 1.0883 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 7.0764 0.4294 -1.8263 38 1 6.5324 1.9725 -2.5272 39 1 7.6117 1.9693 -1.1118 40 1 5.7896 1.4414 3.2715 41 1 9.6610 2.6082 3.9080 42 1 8.5562 3.1430 2.6055 43 1 7.3821 4.4916 4.0826 44 1 8.6217 4.1260 5.3180 45 1 5.8896 2.8499 4.9182 46 1 6.8083 3.1031 6.4394 47 1 5.4894 -3.2658 5.5911 48 1 8.1643 -1.4800 5.1470 49 1 6.9027 -1.3113 3.8940 50 1 9.5565 0.1515 4.1380 51 1 8.6344 -0.2832 2.6585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992399119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:16 Heat of formation + Delta-G solvation = -8.669701 kcal Electronic energy + Delta-G solvation = -32497.990451 eV Core-core repulsion = 28398.767724 eV Total energy + Delta-G solvation = -4099.222726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.57494 -41.98354 -39.61070 -36.61325 -36.28047 -36.11634 -34.51439 -33.63364 -32.64040 -31.60663 -29.45361 -28.60219 -28.35740 -27.14335 -25.97040 -24.01675 -23.17864 -22.38060 -22.15337 -21.74462 -21.26873 -20.24823 -19.31635 -18.37785 -18.06781 -17.46445 -17.05810 -16.53832 -16.22622 -16.15093 -15.86987 -15.72366 -15.66507 -15.32275 -15.02431 -14.34793 -14.26462 -14.20367 -14.10167 -14.07161 -13.58861 -13.32602 -13.13167 -13.08013 -12.98170 -12.88405 -12.71969 -12.63806 -12.35116 -12.23638 -12.15773 -12.12358 -11.99862 -11.98157 -11.84737 -11.69308 -11.59887 -11.38947 -11.24278 -10.84178 -10.71211 -10.20316 -9.81019 -8.89972 -7.85969 -5.21907 -0.30832 1.23804 1.32411 1.45332 1.47541 1.53731 1.97567 2.14434 2.48499 2.77722 3.03886 3.33887 3.58450 3.59967 3.74593 3.85829 3.93965 3.99136 4.06793 4.11645 4.25376 4.35490 4.36816 4.39790 4.48279 4.54774 4.59454 4.61723 4.64597 4.66778 4.76217 4.83473 4.85324 4.89590 4.91229 4.94249 5.04222 5.09146 5.15051 5.19704 5.20106 5.24149 5.28861 5.38945 5.46301 5.52807 5.55281 5.60987 5.71799 6.15733 6.30501 6.52867 6.99557 7.02583 7.74786 8.46660 9.25612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.004808 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.112571 B = 5822.423469 C = 8255.215281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.025 4.025 4 C 0.225 3.775 5 N -0.503 5.503 6 C 0.074 3.926 7 C -0.074 4.074 8 C -0.140 4.140 9 C 0.607 3.393 10 O -0.536 6.536 11 N -0.677 5.677 12 C 0.136 3.864 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.111 4.111 16 C 0.147 3.853 17 H 0.025 0.975 18 N -0.598 5.598 19 C -0.234 4.234 20 H 0.088 0.912 21 C -0.062 4.062 22 N -0.951 5.951 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.300 1.300 26 H -0.278 1.278 27 C 0.189 3.811 28 C -0.127 4.127 29 O -0.197 6.197 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.402 0.598 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.245 0.755 48 H 0.004 0.996 49 H 0.025 0.975 50 H 0.088 0.912 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 12.210 -10.845 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.062 4.062 4 C 0.020 3.980 5 N -0.233 5.233 6 C -0.050 4.050 7 C -0.131 4.131 8 C -0.195 4.195 9 C 0.393 3.607 10 O -0.416 6.416 11 N -0.325 5.325 12 C 0.049 3.951 13 C -0.145 4.145 14 C -0.141 4.141 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.043 0.957 18 N -0.321 5.321 19 C -0.362 4.362 20 H 0.106 0.894 21 C -0.255 4.255 22 N -0.600 5.600 23 Si 0.801 3.199 24 H -0.200 1.200 25 H -0.227 1.227 26 H -0.204 1.204 27 C 0.065 3.935 28 C -0.166 4.166 29 O -0.084 6.084 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.237 0.763 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.022 0.978 49 H 0.043 0.957 50 H 0.106 0.894 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.965 12.022 -11.610 17.177 hybrid contribution -0.805 -1.240 1.596 2.175 sum -4.770 10.782 -10.014 15.469 Atomic orbital electron populations 1.21718 0.92462 1.02787 1.03251 1.21525 0.98279 0.94082 1.02142 1.20605 0.77818 1.00291 1.07513 1.27502 0.97790 0.94752 0.77988 1.70352 1.01446 1.21232 1.30284 1.22458 0.94344 0.96965 0.91248 1.20404 0.91132 1.04094 0.97455 1.23027 0.82661 1.18123 0.95639 1.16385 0.85515 0.77035 0.81762 1.90774 1.23980 1.52711 1.74167 1.45655 1.10507 1.71916 1.04444 1.21665 0.85942 0.94689 0.92851 1.21904 0.99604 0.92787 1.00220 1.22783 0.97312 0.96872 0.97115 1.21862 0.98791 0.93319 1.01002 1.21088 0.95370 0.87853 0.91911 0.95731 1.43793 1.34557 1.04179 1.49589 1.19350 1.05110 0.94273 1.17496 0.89431 1.25577 1.02276 0.96001 1.01627 1.70134 1.43873 1.01096 1.44888 0.85249 0.79637 0.76263 0.78789 1.20034 1.22664 1.20366 1.21691 0.91117 0.90388 0.90332 1.22665 0.98777 0.95426 0.99735 1.84496 1.16281 1.69497 1.38118 0.91654 0.90661 0.92126 0.91704 0.93259 0.86737 0.84906 0.89684 0.88709 0.89199 0.76277 0.89277 0.91445 0.90692 0.89289 0.92430 0.90755 0.94598 0.97798 0.95684 0.89394 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 3 C -0.02 -0.44 5.84 29.85 0.17 -0.26 16 4 C 0.22 6.23 7.57 88.29 0.67 6.90 16 5 N -0.50 -15.06 11.26 -291.06 -3.28 -18.33 16 6 C 0.07 2.33 7.16 41.83 0.30 2.63 16 7 C -0.07 -1.90 9.87 71.24 0.70 -1.19 16 8 C -0.14 -4.86 7.18 24.05 0.17 -4.69 16 9 C 0.61 22.26 7.11 86.46 0.62 22.88 16 10 O -0.54 -20.26 12.95 -4.30 -0.06 -20.32 16 11 N -0.68 -25.00 4.39 -423.53 -1.86 -26.86 16 12 C 0.14 4.83 0.40 4.33 0.00 4.84 16 13 C -0.11 -3.03 6.04 30.98 0.19 -2.84 16 14 C -0.10 -2.51 6.94 32.70 0.23 -2.28 16 15 C -0.11 -3.44 6.46 30.93 0.20 -3.24 16 16 C 0.15 5.67 2.64 46.47 0.12 5.79 16 17 H 0.03 0.99 7.94 -2.39 -0.02 0.97 16 18 N -0.60 -29.22 3.12 -668.61 -2.09 -31.31 16 19 C -0.23 -12.43 10.29 84.03 0.86 -11.56 16 20 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 22 N -0.95 -56.79 10.55 21.65 0.23 -56.56 16 23 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.19 9.43 5.33 86.96 0.46 9.89 16 28 C -0.13 -5.05 6.19 31.43 0.19 -4.86 16 29 O -0.20 -6.54 10.57 -7.21 -0.08 -6.62 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.42 6.47 -2.39 -0.02 2.41 16 40 H 0.40 15.76 7.60 -92.71 -0.70 15.06 16 41 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 42 H 0.07 2.00 6.86 -2.39 -0.02 1.98 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.86 7.38 -2.39 -0.02 1.84 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 48 H 0.00 0.21 7.98 -2.39 -0.02 0.19 16 49 H 0.02 1.42 7.05 -2.39 -0.02 1.41 16 50 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 51 H 0.06 2.52 7.18 -2.38 -0.02 2.51 16 Total: -1.00 -67.93 402.64 1.39 -66.55 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.23 Total: 30.95 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.26 Total: 15.75 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -6.99 Total: -133.07 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.13 Total: -26.94 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.93 1.39 -66.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992399119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.877 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds