Wall clock time and date at job start Wed Apr 1 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47197 * 2 1 4 4 C 1.50703 * 109.47515 * 120.00181 * 2 1 3 5 5 C 1.35313 * 126.66599 * 120.28411 * 4 2 1 6 6 C 1.42276 * 103.91945 * 180.09004 * 5 4 2 7 7 C 1.48324 * 126.93734 * 179.90768 * 6 5 4 8 8 O 1.21497 * 120.00408 * 359.71449 * 7 6 5 9 9 N 1.34773 * 120.00317 * 179.71060 * 7 6 5 10 10 C 1.48246 * 125.78145 * 0.02562 * 9 7 6 11 11 C 1.52332 * 105.86615 * 176.81239 * 10 9 7 12 12 H 1.09000 * 110.24236 * 272.17805 * 11 10 9 13 13 C 1.51442 * 117.45129 * 145.32067 * 11 10 9 14 14 C 1.53839 * 107.04272 * 181.22652 * 13 11 10 15 15 C 1.52529 * 111.65684 * 57.20106 * 14 13 11 16 16 C 1.53824 * 111.70276 * 305.95125 * 15 14 13 17 17 H 1.09004 * 109.94185 * 298.08158 * 16 15 14 18 18 N 1.46496 * 109.94295 * 176.91592 * 16 15 14 19 19 C 1.36945 * 119.99718 * 85.00360 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51618 * 107.02043 * 57.53899 * 16 15 14 28 28 H 1.09009 * 110.50434 * 55.20166 * 27 16 15 29 29 C 1.48665 * 125.79081 * 180.02562 * 9 7 6 30 30 N 1.30984 * 106.12132 * 359.65290 * 6 5 4 31 31 O 1.20901 * 111.44296 * 0.22169 * 30 6 5 32 32 H 1.09000 * 109.46794 * 299.99205 * 1 2 3 33 33 H 1.08993 * 109.47467 * 60.00112 * 1 2 3 34 34 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47004 * 240.00067 * 2 1 3 36 36 H 1.09002 * 109.47559 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47168 * 300.00579 * 3 2 1 38 38 H 1.09003 * 109.47089 * 60.00119 * 3 2 1 39 39 H 1.08003 * 128.04172 * 359.96770 * 5 4 2 40 40 H 1.09007 * 110.17392 * 57.71721 * 10 9 7 41 41 H 1.08993 * 110.17395 * 295.91644 * 10 9 7 42 42 H 1.09004 * 109.93942 * 61.84457 * 13 11 10 43 43 H 1.09002 * 109.93740 * 300.61258 * 13 11 10 44 44 H 1.09004 * 109.04294 * 296.64329 * 14 13 11 45 45 H 1.08991 * 109.04576 * 177.75829 * 14 13 11 46 46 H 1.09000 * 109.03374 * 185.38437 * 15 14 13 47 47 H 1.08995 * 108.97548 * 66.48426 * 15 14 13 48 48 H 0.96996 * 120.00499 * 265.00091 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62191 * 37.13184 * 29 9 7 51 51 H 1.08997 * 110.76272 * 274.18044 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8179 -1.8118 1.2635 6 6 2.9920 -2.0665 2.6524 7 6 3.7725 -3.1687 3.2655 8 8 4.3432 -3.9754 2.5585 9 7 3.8489 -3.2754 4.6068 10 6 3.2062 -2.3673 5.5866 11 6 3.5186 -2.9479 6.9598 12 1 2.7614 -3.6799 7.2409 13 6 3.7384 -1.9721 8.0969 14 6 4.0635 -2.8046 9.3490 15 6 5.2757 -3.7037 9.1281 16 6 5.1070 -4.5901 7.8823 17 1 4.2493 -5.2507 8.0095 18 7 6.3198 -5.3824 7.6648 19 6 6.4867 -6.5729 8.3208 20 1 5.7244 -6.9273 8.9988 21 6 7.6356 -7.3239 8.1144 22 7 8.5650 -6.8917 7.2886 23 14 7.8636 -8.9474 9.0098 24 1 9.1632 -9.5501 8.6187 25 1 7.8483 -8.7107 10.4757 26 1 6.7603 -9.8724 8.6462 27 6 4.8773 -3.6624 6.7053 28 1 5.6861 -2.9355 6.6285 29 6 4.5920 -4.3235 5.3547 30 7 2.3284 -1.1278 3.2802 31 8 1.7928 -0.3708 2.5045 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6767 1.9563 0.8900 39 1 3.2178 -2.3693 0.4294 40 1 2.1284 -2.3425 5.4253 41 1 3.6231 -1.3640 5.4990 42 1 2.8344 -1.3865 8.2642 43 1 4.5728 -1.3108 7.8631 44 1 3.2019 -3.4242 9.5977 45 1 4.2675 -2.1308 10.1810 46 1 5.4097 -4.3409 10.0022 47 1 6.1612 -3.0804 9.0036 48 1 7.0046 -5.0639 7.0562 49 1 9.3680 -7.4164 7.1446 50 1 5.5226 -4.5722 4.8446 51 1 3.9773 -5.2141 5.4854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992774167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:08 Heat of formation + Delta-G solvation = 28.348937 kcal Electronic energy + Delta-G solvation = -31043.942869 eV Core-core repulsion = 26946.325391 eV Total energy + Delta-G solvation = -4097.617478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.29016 -40.37919 -38.60729 -36.52624 -35.57693 -34.12028 -33.97625 -31.54035 -31.17644 -30.36839 -28.94759 -27.67842 -26.78912 -25.75890 -24.07072 -23.43998 -23.18526 -21.91471 -20.85570 -20.27080 -19.74536 -18.93292 -17.97864 -17.43312 -17.18074 -16.74065 -15.94560 -15.46148 -15.37142 -14.90332 -14.63866 -14.24655 -14.23007 -14.08696 -13.83751 -13.73310 -13.66122 -13.04281 -12.93446 -12.70050 -12.49151 -12.44900 -12.28327 -11.97973 -11.92507 -11.85076 -11.78582 -11.44580 -11.25967 -10.98898 -10.87770 -10.75767 -10.64514 -10.50634 -10.25175 -10.23193 -10.19872 -10.10854 -9.76914 -9.71809 -9.46237 -8.87393 -8.61118 -6.95474 -5.74812 -3.04212 0.96027 1.47153 2.62301 2.81066 3.14269 3.45122 3.49682 3.50704 3.76144 4.00155 4.36848 4.43701 4.53671 4.58987 4.67173 4.81364 4.83160 4.91018 5.04344 5.11928 5.13285 5.27520 5.31413 5.36571 5.40360 5.46281 5.47343 5.55311 5.58002 5.60996 5.65954 5.71636 5.74963 5.75304 5.87287 5.89613 5.92152 6.07357 6.11335 6.15190 6.19941 6.27987 6.44661 6.54176 6.60380 6.64020 6.86545 7.09187 7.44945 7.70871 7.77330 8.07633 8.43062 9.54411 10.10849 10.45560 11.47464 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002353 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.764255 B =11897.413453 C =13086.833270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.151 4.151 4 C -0.030 4.030 5 C -0.181 4.181 6 C -0.016 4.016 7 C 0.606 3.394 8 O -0.523 6.523 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.108 4.108 12 H 0.083 0.917 13 C -0.099 4.099 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.286 1.286 27 C -0.103 4.103 28 H 0.082 0.918 29 C 0.125 3.875 30 N -0.328 5.328 31 O 0.121 5.879 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.180 0.820 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.088 0.912 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 18.794 -11.705 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.093 4.093 5 C -0.203 4.203 6 C -0.175 4.175 7 C 0.391 3.609 8 O -0.398 6.398 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.086 3.914 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.122 4.122 28 H 0.100 0.900 29 C 0.005 3.995 30 N -0.029 5.029 31 O 0.046 5.954 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.197 0.803 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.457 18.393 -10.747 27.542 hybrid contribution 0.730 -1.162 -0.313 1.407 sum -16.727 17.231 -11.060 26.439 Atomic orbital electron populations 1.21900 0.93015 1.02857 1.03090 1.19815 0.96811 0.96168 0.90269 1.21903 1.01791 0.94101 1.03091 1.24464 1.00259 0.97284 0.87260 1.22448 1.02581 0.98705 0.96616 1.23494 1.02823 0.98412 0.92742 1.16467 0.80407 0.82983 0.81006 1.90829 1.46205 1.41973 1.60799 1.49075 1.50573 1.30248 1.04109 1.21789 0.97590 0.93308 0.87747 1.21906 0.98558 0.99005 0.93268 0.89840 1.21280 1.01087 0.97008 0.94309 1.21550 0.99176 0.98013 0.96504 1.22317 0.96544 0.98030 1.00997 1.19969 0.91228 0.90313 0.89938 0.93112 1.42401 1.18924 1.21753 1.53161 1.19159 1.02180 0.96241 1.19519 0.91254 1.24739 0.97065 0.99027 0.99983 1.69650 1.09609 1.39247 1.39419 0.86296 0.76956 0.83900 0.79188 1.21746 1.21338 1.21286 1.22385 0.96616 0.98819 0.94429 0.89978 1.22051 0.96863 0.89432 0.91176 1.74284 1.09531 1.02643 1.16483 1.84757 1.54403 1.42697 1.13563 0.91671 0.91190 0.91991 0.87709 0.91958 0.91182 0.91673 0.80289 0.90969 0.91095 0.92039 0.91707 0.92530 0.92654 0.91943 0.92729 0.78188 0.93449 0.89401 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.18 37.16 0.34 -0.32 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.36 16 3 C -0.15 -0.68 9.17 37.15 0.34 -0.34 16 4 C -0.03 -0.26 5.98 -35.35 -0.21 -0.47 16 5 C -0.18 -1.99 10.91 -39.07 -0.43 -2.42 16 6 C -0.02 -0.22 7.03 -82.53 -0.58 -0.80 16 7 C 0.61 10.25 7.89 -12.11 -0.10 10.15 16 8 O -0.52 -10.44 17.25 5.37 0.09 -10.35 16 9 N -0.61 -9.69 3.38 -171.79 -0.58 -10.27 16 10 C 0.12 1.56 5.27 -3.42 -0.02 1.54 16 11 C -0.11 -1.42 2.31 -90.36 -0.21 -1.62 16 12 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 13 C -0.10 -1.16 5.70 -27.08 -0.15 -1.32 16 14 C -0.11 -1.49 5.83 -26.54 -0.15 -1.64 16 15 C -0.14 -2.35 5.45 -26.54 -0.14 -2.49 16 16 C 0.20 3.72 2.51 -68.20 -0.17 3.55 16 17 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 18 N -0.72 -17.60 5.10 -53.69 -0.27 -17.87 16 19 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.10 -1.67 1.99 -89.90 -0.18 -1.85 16 28 H 0.08 1.39 8.01 -51.92 -0.42 0.98 16 29 C 0.13 2.20 6.49 -2.82 -0.02 2.18 16 30 N -0.33 -4.16 9.78 33.29 0.33 -3.84 16 31 O 0.12 1.27 11.18 17.24 0.19 1.46 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.18 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.07 0.91 7.61 -51.93 -0.40 0.51 16 41 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.38 10.11 7.79 -40.82 -0.32 9.79 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 50 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 51 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -32.20 408.40 -9.28 -41.48 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.66 Total: 6.58 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.23 Total: -3.35 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.20 Total: -59.44 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.29 Total: -8.89 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.20 -9.28 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992774167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds