Wall clock time and date at job start Wed Apr 1 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47197 * 2 1 4 4 C 1.50703 * 109.47515 * 120.00181 * 2 1 3 5 5 C 1.35313 * 126.66599 * 120.28411 * 4 2 1 6 6 C 1.42276 * 103.91945 * 180.09004 * 5 4 2 7 7 C 1.48324 * 126.93734 * 179.90768 * 6 5 4 8 8 O 1.21497 * 120.00408 * 359.71449 * 7 6 5 9 9 N 1.34773 * 120.00317 * 179.71060 * 7 6 5 10 10 C 1.48246 * 125.78145 * 0.02562 * 9 7 6 11 11 C 1.52332 * 105.86615 * 176.81239 * 10 9 7 12 12 H 1.09000 * 110.24236 * 272.17805 * 11 10 9 13 13 C 1.51442 * 117.45129 * 145.32067 * 11 10 9 14 14 C 1.53839 * 107.04272 * 181.22652 * 13 11 10 15 15 C 1.52529 * 111.65684 * 57.20106 * 14 13 11 16 16 C 1.53824 * 111.70276 * 305.95125 * 15 14 13 17 17 H 1.09004 * 109.94185 * 298.08158 * 16 15 14 18 18 N 1.46496 * 109.94295 * 176.91592 * 16 15 14 19 19 C 1.36945 * 119.99718 * 85.00360 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.51618 * 107.02043 * 57.53899 * 16 15 14 28 28 H 1.09009 * 110.50434 * 55.20166 * 27 16 15 29 29 C 1.48665 * 125.79081 * 180.02562 * 9 7 6 30 30 N 1.30984 * 106.12132 * 359.65290 * 6 5 4 31 31 O 1.20901 * 111.44296 * 0.22169 * 30 6 5 32 32 H 1.09000 * 109.46794 * 299.99205 * 1 2 3 33 33 H 1.08993 * 109.47467 * 60.00112 * 1 2 3 34 34 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47004 * 240.00067 * 2 1 3 36 36 H 1.09002 * 109.47559 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47168 * 300.00579 * 3 2 1 38 38 H 1.09003 * 109.47089 * 60.00119 * 3 2 1 39 39 H 1.08003 * 128.04172 * 359.96770 * 5 4 2 40 40 H 1.09007 * 110.17392 * 57.71721 * 10 9 7 41 41 H 1.08993 * 110.17395 * 295.91644 * 10 9 7 42 42 H 1.09004 * 109.93942 * 61.84457 * 13 11 10 43 43 H 1.09002 * 109.93740 * 300.61258 * 13 11 10 44 44 H 1.09004 * 109.04294 * 296.64329 * 14 13 11 45 45 H 1.08991 * 109.04576 * 177.75829 * 14 13 11 46 46 H 1.09000 * 109.03374 * 185.38437 * 15 14 13 47 47 H 1.08995 * 108.97548 * 66.48426 * 15 14 13 48 48 H 0.96996 * 120.00499 * 265.00091 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62191 * 37.13184 * 29 9 7 51 51 H 1.08997 * 110.76272 * 274.18044 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8179 -1.8118 1.2635 6 6 2.9920 -2.0665 2.6524 7 6 3.7725 -3.1687 3.2655 8 8 4.3432 -3.9754 2.5585 9 7 3.8489 -3.2754 4.6068 10 6 3.2062 -2.3673 5.5866 11 6 3.5186 -2.9479 6.9598 12 1 2.7614 -3.6799 7.2409 13 6 3.7384 -1.9721 8.0969 14 6 4.0635 -2.8046 9.3490 15 6 5.2757 -3.7037 9.1281 16 6 5.1070 -4.5901 7.8823 17 1 4.2493 -5.2507 8.0095 18 7 6.3198 -5.3824 7.6648 19 6 6.4867 -6.5729 8.3208 20 1 5.7244 -6.9273 8.9988 21 6 7.6356 -7.3239 8.1144 22 7 8.5650 -6.8917 7.2886 23 14 7.8636 -8.9474 9.0098 24 1 9.1632 -9.5501 8.6187 25 1 7.8483 -8.7107 10.4757 26 1 6.7603 -9.8724 8.6462 27 6 4.8773 -3.6624 6.7053 28 1 5.6861 -2.9355 6.6285 29 6 4.5920 -4.3235 5.3547 30 7 2.3284 -1.1278 3.2802 31 8 1.7928 -0.3708 2.5045 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6767 1.9563 0.8900 39 1 3.2178 -2.3693 0.4294 40 1 2.1284 -2.3425 5.4253 41 1 3.6231 -1.3640 5.4990 42 1 2.8344 -1.3865 8.2642 43 1 4.5728 -1.3108 7.8631 44 1 3.2019 -3.4242 9.5977 45 1 4.2675 -2.1308 10.1810 46 1 5.4097 -4.3409 10.0022 47 1 6.1612 -3.0804 9.0036 48 1 7.0046 -5.0639 7.0562 49 1 9.3680 -7.4164 7.1446 50 1 5.5226 -4.5722 4.8446 51 1 3.9773 -5.2141 5.4854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992774167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:07 Heat of formation + Delta-G solvation = 9.497195 kcal Electronic energy + Delta-G solvation = -31044.760342 eV Core-core repulsion = 26946.325391 eV Total energy + Delta-G solvation = -4098.434951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.21735 -41.68949 -39.96282 -37.13831 -36.95505 -35.65444 -35.08737 -33.31930 -32.15602 -31.47180 -30.59136 -28.19373 -27.99559 -26.98565 -25.66399 -24.59495 -24.21672 -22.80098 -22.14300 -21.56593 -21.09841 -20.05497 -19.13917 -18.89997 -18.27864 -17.90060 -17.26674 -16.69641 -16.64855 -16.08469 -15.74776 -15.60704 -15.51696 -15.25518 -15.06066 -14.80487 -14.51410 -14.32171 -14.10382 -13.94139 -13.72640 -13.53990 -13.34806 -12.98883 -12.96233 -12.88445 -12.78077 -12.57821 -12.34343 -12.26223 -12.15055 -12.05735 -11.92924 -11.81377 -11.78469 -11.61203 -11.56215 -11.49486 -11.29769 -10.95158 -10.84323 -10.49969 -9.95170 -9.00111 -7.93473 -5.21908 -0.03286 0.59485 1.45282 1.48282 1.48402 1.54125 1.90771 1.95802 2.55249 2.68700 3.16535 3.33343 3.38987 3.57596 3.68258 3.81860 3.92343 3.99970 4.06404 4.12010 4.16706 4.18478 4.32025 4.34710 4.42122 4.48365 4.52522 4.55353 4.62176 4.65000 4.72000 4.74465 4.80695 4.82277 4.85906 4.97124 4.99559 5.00590 5.05230 5.17392 5.23225 5.28067 5.33077 5.38227 5.40766 5.42035 5.47012 5.51489 5.66743 6.17150 6.27933 6.66261 6.97352 7.33875 8.09904 8.32441 9.29806 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002353 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.764255 B =11897.413453 C =13086.833270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.010 4.010 3 C -0.151 4.151 4 C -0.005 4.005 5 C -0.196 4.196 6 C -0.042 4.042 7 C 0.600 3.400 8 O -0.567 6.567 9 N -0.607 5.607 10 C 0.123 3.877 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.092 4.092 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.192 3.808 17 H 0.048 0.952 18 N -0.736 5.736 19 C -0.234 4.234 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.299 1.299 25 H -0.276 1.276 26 H -0.279 1.279 27 C -0.097 4.097 28 H 0.074 0.926 29 C 0.129 3.871 30 N -0.333 5.333 31 O 0.133 5.867 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.188 0.812 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.052 0.948 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.622 21.196 -11.524 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 C -0.208 4.208 4 C -0.069 4.069 5 C -0.219 4.219 6 C -0.199 4.199 7 C 0.387 3.613 8 O -0.445 6.445 9 N -0.340 5.340 10 C 0.002 3.998 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.130 4.130 14 C -0.145 4.145 15 C -0.169 4.169 16 C 0.083 3.917 17 H 0.066 0.934 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.095 0.905 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.225 1.225 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.117 4.117 28 H 0.092 0.908 29 C 0.007 3.993 30 N -0.032 5.032 31 O 0.055 5.945 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.206 0.794 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.517 20.825 -10.504 31.064 hybrid contribution 1.565 -1.814 -0.435 2.435 sum -18.952 19.011 -10.940 28.988 Atomic orbital electron populations 1.21915 0.92011 1.02797 1.04029 1.20090 0.97517 0.96494 0.88835 1.21920 1.01372 0.93480 1.04037 1.25074 0.98317 0.96124 0.87341 1.22640 1.03644 0.99858 0.95713 1.23198 1.04145 0.98510 0.94033 1.16929 0.80076 0.83290 0.80971 1.90789 1.48128 1.43827 1.61781 1.49148 1.50255 1.30133 1.04453 1.21907 0.98191 0.92936 0.86740 1.21914 0.96041 0.99234 0.93976 0.89126 1.21286 1.02748 0.96505 0.92469 1.21487 0.97228 0.97829 0.97928 1.22138 0.98437 0.97809 0.98543 1.20197 0.88838 0.90527 0.92128 0.93361 1.42619 1.20266 1.21858 1.52727 1.19558 1.01752 0.96813 1.18432 0.90526 1.25542 0.97319 1.02637 1.01564 1.69823 1.10117 1.40607 1.41664 0.85262 0.76419 0.80028 0.78383 1.22541 1.20250 1.20561 1.22186 0.98674 0.98154 0.92663 0.90750 1.21822 0.95418 0.90108 0.91931 1.74252 1.09459 1.02443 1.17068 1.84731 1.53514 1.41880 1.14346 0.91960 0.89106 0.92556 0.85909 0.92657 0.89076 0.91971 0.79446 0.89506 0.90251 0.88618 0.91612 0.91379 0.90634 0.93848 0.93986 0.79832 0.94242 0.92951 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.18 71.98 0.66 -0.21 16 2 C -0.01 -0.08 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -0.92 9.17 71.98 0.66 -0.26 16 4 C -0.01 -0.08 5.98 25.01 0.15 0.07 16 5 C -0.20 -4.17 10.91 22.60 0.25 -3.93 16 6 C -0.04 -1.15 7.03 42.96 0.30 -0.85 16 7 C 0.60 21.04 7.89 86.93 0.69 21.73 16 8 O -0.57 -24.04 17.25 -3.71 -0.06 -24.10 16 9 N -0.61 -19.82 3.38 -815.73 -2.76 -22.58 16 10 C 0.12 3.07 5.27 85.82 0.45 3.52 16 11 C -0.09 -2.24 2.31 -10.62 -0.02 -2.26 16 12 H 0.09 2.13 7.92 -2.39 -0.02 2.11 16 13 C -0.09 -1.84 5.70 30.37 0.17 -1.67 16 14 C -0.11 -2.45 5.83 30.72 0.18 -2.27 16 15 C -0.13 -4.30 5.45 30.72 0.17 -4.13 16 16 C 0.19 7.36 2.51 44.82 0.11 7.47 16 17 H 0.05 1.88 7.94 -2.38 -0.02 1.86 16 18 N -0.74 -37.22 5.10 -323.78 -1.65 -38.87 16 19 C -0.23 -13.02 9.95 84.03 0.84 -12.19 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 23 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 24 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C -0.10 -3.20 1.99 -10.33 -0.02 -3.22 16 28 H 0.07 2.59 8.01 -2.38 -0.02 2.57 16 29 C 0.13 4.77 6.49 85.98 0.56 5.32 16 30 N -0.33 -7.99 9.78 -49.52 -0.48 -8.47 16 31 O 0.13 2.54 11.18 71.88 0.80 3.35 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.12 0.56 8.12 -2.39 -0.02 0.54 16 36 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.09 1.97 7.61 -2.38 -0.02 1.95 16 41 H 0.08 1.88 7.87 -2.39 -0.02 1.87 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.35 8.03 -2.39 -0.02 1.33 16 44 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.37 20.58 7.79 -92.71 -0.72 19.86 16 49 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.05 2.28 8.07 -2.39 -0.02 2.26 16 51 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -73.67 408.40 3.92 -69.75 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.20 Total: 29.69 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.57 Total: 2.88 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -4.61 Total: -130.79 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.74 Total: -20.76 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -73.67 3.92 -69.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992774167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.246 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds