Wall clock time and date at job start Wed Apr 1 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47038 * 2 1 4 4 C 1.50703 * 109.47004 * 119.99932 * 2 1 3 5 5 C 1.41264 * 126.70197 * 275.27654 * 4 2 1 6 6 C 1.36826 * 103.84276 * 180.08355 * 5 4 2 7 7 C 1.47512 * 126.94169 * 179.97438 * 6 5 4 8 8 O 1.21583 * 120.00067 * 359.71483 * 7 6 5 9 9 N 1.34777 * 119.99606 * 179.97438 * 7 6 5 10 10 C 1.47674 * 125.80040 * 359.75679 * 9 7 6 11 11 C 1.55674 * 104.33917 * 205.38852 * 10 9 7 12 12 H 1.08998 * 112.69332 * 200.89645 * 11 10 9 13 13 C 1.52925 * 107.12475 * 76.81162 * 11 10 9 14 14 C 1.52658 * 109.93312 * 193.88399 * 13 11 10 15 15 C 1.51792 * 111.15588 * 60.35242 * 14 13 11 16 16 C 1.50787 * 113.10304 * 307.57356 * 15 14 13 17 17 H 1.08999 * 108.00797 * 164.46992 * 16 15 14 18 18 N 1.46502 * 108.16286 * 281.16711 * 16 15 14 19 19 C 1.36940 * 120.00224 * 281.45878 * 18 16 15 20 20 H 1.07999 * 119.99942 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99764 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99838 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00272 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 90.00337 * 23 21 19 25 25 H 1.48493 * 109.47194 * 209.99978 * 23 21 19 26 26 H 1.48498 * 109.47004 * 330.00596 * 23 21 19 27 27 C 1.49867 * 116.06186 * 42.87834 * 16 15 14 28 28 H 1.08993 * 108.36319 * 197.45943 * 27 16 15 29 29 C 1.47499 * 125.79355 * 179.44129 * 9 7 6 30 30 O 1.34640 * 106.11404 * 359.67291 * 6 5 4 31 31 N 1.20891 * 111.46789 * 0.21844 * 30 6 5 32 32 H 1.08999 * 109.46950 * 299.99668 * 1 2 3 33 33 H 1.09000 * 109.47000 * 60.00257 * 1 2 3 34 34 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47201 * 239.99876 * 2 1 3 36 36 H 1.09004 * 109.47493 * 59.99866 * 3 2 1 37 37 H 1.09001 * 109.47333 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47443 * 300.00056 * 3 2 1 39 39 H 1.07999 * 128.08197 * 359.97438 * 5 4 2 40 40 H 1.09001 * 110.45686 * 324.09977 * 10 9 7 41 41 H 1.09000 * 110.46224 * 86.54435 * 10 9 7 42 42 H 1.08999 * 109.35636 * 313.37232 * 13 11 10 43 43 H 1.08993 * 109.35768 * 72.96030 * 13 11 10 44 44 H 1.09001 * 108.73373 * 300.03918 * 14 13 11 45 45 H 1.09000 * 109.18646 * 180.95637 * 14 13 11 46 46 H 1.09005 * 108.76201 * 186.63717 * 15 14 13 47 47 H 1.09000 * 108.66543 * 68.44327 * 15 14 13 48 48 H 0.97008 * 119.99874 * 101.45387 * 18 16 15 49 49 H 0.96996 * 119.99662 * 179.97438 * 22 21 19 50 50 H 1.09000 * 110.03351 * 298.12678 * 29 9 7 51 51 H 1.08996 * 110.03094 * 59.56586 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2156 -0.1491 2.5138 6 6 2.6837 -1.1931 3.2640 7 6 3.0456 -1.1653 4.6938 8 8 2.9432 -0.1323 5.3268 9 7 3.4948 -2.2837 5.2971 10 6 3.6691 -3.6016 4.6540 11 6 3.5519 -4.6205 5.8251 12 1 4.0068 -5.5832 5.5920 13 6 2.0664 -4.7461 6.1657 14 6 1.8983 -5.4506 7.5096 15 6 2.5735 -4.6723 8.6243 16 6 4.0135 -4.3395 8.3254 17 1 4.3319 -3.5643 9.0223 18 7 4.8206 -5.5358 8.5781 19 6 5.1551 -5.8777 9.8612 20 1 4.8242 -5.2652 10.6869 21 6 5.9203 -7.0109 10.1005 22 7 6.2413 -7.3398 11.3338 23 14 6.4931 -8.0699 8.6722 24 1 7.8120 -7.5836 8.1934 25 1 6.6185 -9.4799 9.1206 26 1 5.5044 -7.9877 7.5673 27 6 4.3045 -3.8650 6.9339 28 1 5.3756 -3.9597 6.7558 29 6 3.9020 -2.3975 6.7102 30 8 2.7410 -2.2527 2.4353 31 7 2.3769 -1.9621 1.3198 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8900 39 1 2.0311 0.8674 2.8288 40 1 2.8827 -3.7738 3.9190 41 1 4.6502 -3.6695 4.1840 42 1 1.6254 -3.7515 6.2313 43 1 1.5625 -5.3116 5.3819 44 1 2.3441 -6.4430 7.4429 45 1 0.8358 -5.5487 7.7322 46 1 2.5331 -5.2636 9.5391 47 1 2.0250 -3.7439 8.7834 48 1 5.1181 -6.0858 7.8364 49 1 6.7757 -8.1319 11.5010 50 1 4.7495 -1.7414 6.9086 51 1 3.0674 -2.1376 7.3613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992822139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:40 Heat of formation + Delta-G solvation = 33.600081 kcal Electronic energy + Delta-G solvation = -31455.553725 eV Core-core repulsion = 27358.163954 eV Total energy + Delta-G solvation = -4097.389771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.33171 -40.73231 -38.83493 -37.03960 -35.89699 -33.66664 -32.84847 -32.37973 -31.67139 -30.76408 -29.75463 -27.71360 -26.96446 -25.58044 -24.48078 -23.64951 -22.51476 -22.14003 -21.53106 -21.13146 -19.61491 -18.42745 -18.07195 -17.85238 -17.38124 -16.58498 -16.22411 -16.09249 -15.08468 -14.91502 -14.74285 -14.62363 -14.20017 -14.11465 -13.99847 -13.92097 -13.73555 -13.20784 -13.11090 -12.81691 -12.69025 -12.47634 -12.21510 -12.10385 -12.03242 -12.00164 -11.81711 -11.52255 -11.39672 -11.32150 -11.15692 -10.93355 -10.84740 -10.50651 -10.47325 -10.29167 -10.03970 -9.99290 -9.93990 -9.71117 -9.57741 -8.90744 -8.85036 -7.27521 -5.77735 -3.13115 0.51677 1.70386 2.25944 2.74593 2.85166 3.35339 3.37655 3.44359 3.55610 3.95829 4.34666 4.41842 4.51815 4.57616 4.58788 4.63264 4.70555 4.78124 4.85534 5.03704 5.11886 5.12519 5.25474 5.30650 5.33510 5.36770 5.42758 5.44432 5.46574 5.50386 5.59938 5.60214 5.67474 5.71643 5.73113 5.73920 5.79316 5.90472 5.96557 6.02455 6.07833 6.24033 6.26830 6.35337 6.66525 6.69937 6.85707 7.04587 7.13878 7.59385 7.83243 7.98546 8.41045 9.19717 9.92078 10.12003 11.40651 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.002339 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.135505 B =11966.018539 C =12188.254207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.019 3.981 5 C -0.151 4.151 6 C -0.073 4.073 7 C 0.615 3.385 8 O -0.516 6.516 9 N -0.599 5.599 10 C 0.093 3.907 11 C -0.090 4.090 12 H 0.101 0.899 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.194 3.806 17 H 0.053 0.947 18 N -0.749 5.749 19 C -0.240 4.240 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.277 1.277 27 C -0.095 4.095 28 H 0.085 0.915 29 C 0.118 3.882 30 O 0.118 5.882 31 N -0.347 5.347 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.182 0.818 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.041 0.959 48 H 0.359 0.641 49 H 0.259 0.741 50 H 0.076 0.924 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 14.389 -23.080 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.173 4.173 6 C -0.139 4.139 7 C 0.400 3.600 8 O -0.392 6.392 9 N -0.332 5.332 10 C -0.029 4.029 11 C -0.109 4.109 12 H 0.119 0.881 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.085 3.915 17 H 0.071 0.929 18 N -0.393 5.393 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.115 4.115 28 H 0.103 0.897 29 C -0.004 4.004 30 O 0.046 5.954 31 N -0.047 5.047 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.199 0.801 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.060 0.940 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.877 14.003 -23.360 29.327 hybrid contribution 0.456 -0.277 -0.570 0.780 sum -10.421 13.726 -23.930 29.490 Atomic orbital electron populations 1.21842 0.93149 1.02565 1.02701 1.19563 0.96310 0.95522 0.92257 1.21865 1.01601 0.94141 1.02841 1.23614 1.02525 0.90422 0.97351 1.22776 1.01700 1.01370 0.91451 1.24197 1.07187 0.88350 0.94202 1.16105 0.78334 0.83186 0.82370 1.90883 1.54756 1.30425 1.63143 1.48509 1.62535 1.09490 1.12622 1.22923 1.02287 0.81451 0.96282 1.22300 0.97115 0.97972 0.93473 0.88069 1.21454 0.94502 1.00872 0.97857 1.21041 0.99521 1.00047 0.94072 1.21425 0.96871 0.99163 0.99359 1.18945 0.90587 0.90219 0.91746 0.92934 1.42904 1.63070 1.27812 1.05523 1.19043 1.26574 1.07477 0.83862 0.89204 1.24663 1.00437 0.98294 0.95787 1.69699 1.42887 1.27774 1.17857 0.86576 0.78767 0.80543 0.82760 1.21210 1.21918 1.20285 1.21549 1.01170 0.92324 0.96466 0.89663 1.22121 1.00595 0.97539 0.80097 1.85075 1.62262 1.34145 1.13914 1.73730 1.14274 1.17037 0.99693 0.92004 0.91351 0.92282 0.89176 0.91837 0.92118 0.91341 0.80094 0.89673 0.90568 0.92302 0.92199 0.91861 0.92937 0.90478 0.94019 0.80797 0.93114 0.90550 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 2 C -0.02 -0.11 3.38 -91.77 -0.31 -0.42 16 3 C -0.15 -0.75 8.81 37.15 0.33 -0.42 16 4 C 0.02 0.18 6.20 -82.16 -0.51 -0.33 16 5 C -0.15 -1.48 10.13 -38.94 -0.39 -1.87 16 6 C -0.07 -0.84 7.07 -36.31 -0.26 -1.09 16 7 C 0.61 8.02 7.86 -12.48 -0.10 7.93 16 8 O -0.52 -8.06 17.25 5.29 0.09 -7.97 16 9 N -0.60 -7.30 2.91 -171.01 -0.50 -7.79 16 10 C 0.09 0.99 5.56 -1.97 -0.01 0.98 16 11 C -0.09 -1.09 3.59 -88.80 -0.32 -1.40 16 12 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.11 -1.33 4.97 -26.95 -0.13 -1.46 16 14 C -0.11 -1.56 5.87 -27.52 -0.16 -1.72 16 15 C -0.13 -2.09 5.36 -28.45 -0.15 -2.24 16 16 C 0.19 3.35 2.24 -70.59 -0.16 3.19 16 17 H 0.05 0.97 7.97 -51.93 -0.41 0.55 16 18 N -0.75 -16.20 4.79 -56.04 -0.27 -16.47 16 19 C -0.24 -6.39 9.90 -15.06 -0.15 -6.54 16 20 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 23 Si 0.88 21.38 27.74 -169.99 -4.71 16.66 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 27 C -0.10 -1.32 2.05 -91.32 -0.19 -1.51 16 28 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 29 C 0.12 1.52 5.87 -3.08 -0.02 1.51 16 30 O 0.12 1.34 8.56 15.55 0.13 1.47 16 31 N -0.35 -3.93 12.04 33.52 0.40 -3.52 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.30 7.49 -51.93 -0.39 -0.08 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.18 1.47 7.66 -52.49 -0.40 1.07 16 40 H 0.09 0.85 6.10 -51.93 -0.32 0.53 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.73 7.22 -51.93 -0.38 0.35 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.48 7.62 -51.93 -0.40 1.08 16 47 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.36 7.65 5.60 -40.82 -0.23 7.42 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -31.43 399.27 -8.78 -40.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.43 Total: 5.21 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.29 Total: -5.89 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.41 Total: -55.72 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.22 Total: -6.50 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.43 -8.78 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992822139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.814 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds