Wall clock time and date at job start Wed Apr 1 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47038 * 2 1 4 4 C 1.50703 * 109.47004 * 119.99932 * 2 1 3 5 5 C 1.41264 * 126.70197 * 275.27654 * 4 2 1 6 6 C 1.36826 * 103.84276 * 180.08355 * 5 4 2 7 7 C 1.47512 * 126.94169 * 179.97438 * 6 5 4 8 8 O 1.21583 * 120.00067 * 359.71483 * 7 6 5 9 9 N 1.34777 * 119.99606 * 179.97438 * 7 6 5 10 10 C 1.47674 * 125.80040 * 359.75679 * 9 7 6 11 11 C 1.55674 * 104.33917 * 205.38852 * 10 9 7 12 12 H 1.08998 * 112.69332 * 200.89645 * 11 10 9 13 13 C 1.52925 * 107.12475 * 76.81162 * 11 10 9 14 14 C 1.52658 * 109.93312 * 193.88399 * 13 11 10 15 15 C 1.51792 * 111.15588 * 60.35242 * 14 13 11 16 16 C 1.50787 * 113.10304 * 307.57356 * 15 14 13 17 17 H 1.08999 * 108.00797 * 164.46992 * 16 15 14 18 18 N 1.46502 * 108.16286 * 281.16711 * 16 15 14 19 19 C 1.36940 * 120.00224 * 281.45878 * 18 16 15 20 20 H 1.07999 * 119.99942 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99764 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99838 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00272 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 90.00337 * 23 21 19 25 25 H 1.48493 * 109.47194 * 209.99978 * 23 21 19 26 26 H 1.48498 * 109.47004 * 330.00596 * 23 21 19 27 27 C 1.49867 * 116.06186 * 42.87834 * 16 15 14 28 28 H 1.08993 * 108.36319 * 197.45943 * 27 16 15 29 29 C 1.47499 * 125.79355 * 179.44129 * 9 7 6 30 30 O 1.34640 * 106.11404 * 359.67291 * 6 5 4 31 31 N 1.20891 * 111.46789 * 0.21844 * 30 6 5 32 32 H 1.08999 * 109.46950 * 299.99668 * 1 2 3 33 33 H 1.09000 * 109.47000 * 60.00257 * 1 2 3 34 34 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47201 * 239.99876 * 2 1 3 36 36 H 1.09004 * 109.47493 * 59.99866 * 3 2 1 37 37 H 1.09001 * 109.47333 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47443 * 300.00056 * 3 2 1 39 39 H 1.07999 * 128.08197 * 359.97438 * 5 4 2 40 40 H 1.09001 * 110.45686 * 324.09977 * 10 9 7 41 41 H 1.09000 * 110.46224 * 86.54435 * 10 9 7 42 42 H 1.08999 * 109.35636 * 313.37232 * 13 11 10 43 43 H 1.08993 * 109.35768 * 72.96030 * 13 11 10 44 44 H 1.09001 * 108.73373 * 300.03918 * 14 13 11 45 45 H 1.09000 * 109.18646 * 180.95637 * 14 13 11 46 46 H 1.09005 * 108.76201 * 186.63717 * 15 14 13 47 47 H 1.09000 * 108.66543 * 68.44327 * 15 14 13 48 48 H 0.97008 * 119.99874 * 101.45387 * 18 16 15 49 49 H 0.96996 * 119.99662 * 179.97438 * 22 21 19 50 50 H 1.09000 * 110.03351 * 298.12678 * 29 9 7 51 51 H 1.08996 * 110.03094 * 59.56586 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.2156 -0.1491 2.5138 6 6 2.6837 -1.1931 3.2640 7 6 3.0456 -1.1653 4.6938 8 8 2.9432 -0.1323 5.3268 9 7 3.4948 -2.2837 5.2971 10 6 3.6691 -3.6016 4.6540 11 6 3.5519 -4.6205 5.8251 12 1 4.0068 -5.5832 5.5920 13 6 2.0664 -4.7461 6.1657 14 6 1.8983 -5.4506 7.5096 15 6 2.5735 -4.6723 8.6243 16 6 4.0135 -4.3395 8.3254 17 1 4.3319 -3.5643 9.0223 18 7 4.8206 -5.5358 8.5781 19 6 5.1551 -5.8777 9.8612 20 1 4.8242 -5.2652 10.6869 21 6 5.9203 -7.0109 10.1005 22 7 6.2413 -7.3398 11.3338 23 14 6.4931 -8.0699 8.6722 24 1 7.8120 -7.5836 8.1934 25 1 6.6185 -9.4799 9.1206 26 1 5.5044 -7.9877 7.5673 27 6 4.3045 -3.8650 6.9339 28 1 5.3756 -3.9597 6.7558 29 6 3.9020 -2.3975 6.7102 30 8 2.7410 -2.2527 2.4353 31 7 2.3769 -1.9621 1.3198 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8900 39 1 2.0311 0.8674 2.8288 40 1 2.8827 -3.7738 3.9190 41 1 4.6502 -3.6695 4.1840 42 1 1.6254 -3.7515 6.2313 43 1 1.5625 -5.3116 5.3819 44 1 2.3441 -6.4430 7.4429 45 1 0.8358 -5.5487 7.7322 46 1 2.5331 -5.2636 9.5391 47 1 2.0250 -3.7439 8.7834 48 1 5.1181 -6.0858 7.8364 49 1 6.7757 -8.1319 11.5010 50 1 4.7495 -1.7414 6.9086 51 1 3.0674 -2.1376 7.3613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992822139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:39 Heat of formation + Delta-G solvation = 15.351113 kcal Electronic energy + Delta-G solvation = -31456.345060 eV Core-core repulsion = 27358.163954 eV Total energy + Delta-G solvation = -4098.181106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.12155 -41.81074 -39.96566 -37.65268 -37.21269 -35.21682 -33.59238 -33.45520 -33.17579 -31.82299 -31.26075 -28.24880 -28.07173 -26.69905 -25.16620 -25.13059 -23.77294 -23.20023 -22.38291 -22.32452 -20.41523 -19.88770 -19.34987 -18.89277 -18.55226 -17.53346 -17.25389 -17.01074 -16.49950 -16.26918 -15.66945 -15.51921 -15.28706 -15.26348 -15.04203 -14.86107 -14.73294 -14.31385 -14.24503 -14.15634 -13.82582 -13.57062 -13.19367 -13.06764 -12.90175 -12.85176 -12.71959 -12.58556 -12.54995 -12.44328 -12.26630 -12.16007 -12.00070 -11.82544 -11.76231 -11.56619 -11.27680 -11.26175 -11.16798 -10.95644 -10.87392 -10.74183 -9.84578 -9.24500 -7.96428 -5.28708 -0.34206 0.96270 1.33791 1.40950 1.44933 1.52194 1.79401 1.96224 2.53594 2.91050 3.13430 3.33305 3.38262 3.40829 3.70617 3.74386 3.88554 3.95014 4.06100 4.11324 4.14513 4.18205 4.22712 4.31988 4.38354 4.43588 4.46442 4.61205 4.64038 4.73216 4.74807 4.77767 4.83285 4.86366 4.88140 4.91338 4.94179 5.00560 5.07905 5.09779 5.13174 5.21595 5.30610 5.34710 5.37936 5.46601 5.59754 5.65848 5.85177 6.16189 6.27239 6.64058 7.00316 7.14770 7.90383 8.10859 9.25387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.002339 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.135505 B =11966.018539 C =12188.254207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.145 4.145 4 C 0.024 3.976 5 C -0.143 4.143 6 C -0.086 4.086 7 C 0.617 3.383 8 O -0.547 6.547 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.088 4.088 12 H 0.109 0.891 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.124 4.124 16 C 0.195 3.805 17 H 0.034 0.966 18 N -0.748 5.748 19 C -0.218 4.218 20 H 0.054 0.946 21 C -0.069 4.069 22 N -0.988 5.988 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.303 1.303 26 H -0.244 1.244 27 C -0.089 4.089 28 H 0.084 0.916 29 C 0.124 3.876 30 O 0.114 5.886 31 N -0.364 5.364 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.197 0.803 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.057 0.943 48 H 0.365 0.635 49 H 0.255 0.745 50 H 0.076 0.924 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 15.114 -27.055 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.202 4.202 4 C -0.134 4.134 5 C -0.165 4.165 6 C -0.152 4.152 7 C 0.404 3.596 8 O -0.426 6.426 9 N -0.328 5.328 10 C -0.022 4.022 11 C -0.107 4.107 12 H 0.127 0.873 13 C -0.139 4.139 14 C -0.143 4.143 15 C -0.164 4.164 16 C 0.087 3.913 17 H 0.052 0.948 18 N -0.392 5.392 19 C -0.349 4.349 20 H 0.072 0.928 21 C -0.260 4.260 22 N -0.640 5.640 23 Si 0.780 3.220 24 H -0.207 1.207 25 H -0.231 1.231 26 H -0.168 1.168 27 C -0.109 4.109 28 H 0.102 0.898 29 C 0.002 3.998 30 O 0.043 5.957 31 N -0.066 5.066 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.214 0.786 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.199 0.801 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.936 14.748 -27.386 33.316 hybrid contribution 0.697 -0.377 0.712 1.065 sum -11.239 14.371 -26.674 32.316 Atomic orbital electron populations 1.21838 0.92298 1.02165 1.03703 1.19736 0.96930 0.96137 0.90984 1.21873 1.01258 0.93181 1.03935 1.24084 1.01324 0.89866 0.98134 1.23058 1.00342 1.01728 0.91336 1.23964 1.08503 0.89140 0.93609 1.16220 0.77770 0.82768 0.82863 1.90865 1.56194 1.31511 1.64077 1.48499 1.62073 1.10012 1.12242 1.22978 1.03659 0.79873 0.95712 1.22327 0.96817 0.98478 0.93037 0.87287 1.21412 0.94715 1.00864 0.96950 1.20996 0.99807 0.98963 0.94511 1.21291 0.96617 0.99687 0.98779 1.19094 0.90364 0.88064 0.93768 0.94753 1.42857 1.63518 1.29158 1.03653 1.18966 1.24677 1.06186 0.85088 0.92840 1.25488 1.01632 1.00292 0.98585 1.69897 1.44784 1.28640 1.20632 0.85436 0.78954 0.77525 0.80038 1.20696 1.23081 1.16825 1.21331 1.01451 0.93335 0.94776 0.89810 1.21951 1.00447 0.96659 0.80784 1.85051 1.62687 1.34056 1.13877 1.73720 1.15127 1.18046 0.99721 0.91972 0.89433 0.93360 0.88976 0.91476 0.92662 0.89593 0.78634 0.88371 0.89132 0.92304 0.89934 0.93376 0.91672 0.94177 0.92419 0.80107 0.93654 0.90598 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.18 71.98 0.66 -0.60 16 2 C -0.02 -0.20 3.38 -11.54 -0.04 -0.24 16 3 C -0.14 -1.08 8.81 71.98 0.63 -0.45 16 4 C 0.02 0.40 6.20 43.56 0.27 0.67 16 5 C -0.14 -2.50 10.13 22.68 0.23 -2.27 16 6 C -0.09 -1.80 7.07 24.39 0.17 -1.63 16 7 C 0.62 15.13 7.86 86.69 0.68 15.82 16 8 O -0.55 -16.59 17.25 -3.98 -0.07 -16.66 16 9 N -0.60 -13.34 2.91 -813.21 -2.37 -15.70 16 10 C 0.10 1.82 5.56 87.08 0.48 2.30 16 11 C -0.09 -1.87 3.59 -9.61 -0.03 -1.90 16 12 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.10 -2.17 4.97 30.46 0.15 -2.02 16 14 C -0.11 -2.82 5.87 30.08 0.18 -2.65 16 15 C -0.12 -4.03 5.36 29.48 0.16 -3.87 16 16 C 0.19 6.69 2.24 43.27 0.10 6.79 16 17 H 0.03 1.30 7.97 -2.39 -0.02 1.28 16 18 N -0.75 -32.15 4.79 -331.21 -1.59 -33.74 16 19 C -0.22 -11.95 9.90 84.03 0.83 -11.12 16 20 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 22 N -0.99 -63.02 13.97 21.65 0.30 -62.71 16 23 Si 0.95 44.19 27.74 68.60 1.90 46.09 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 27 C -0.09 -2.34 2.05 -11.25 -0.02 -2.36 16 28 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 29 C 0.12 3.04 5.87 86.46 0.51 3.54 16 30 O 0.11 2.33 8.56 65.84 0.56 2.89 16 31 N -0.36 -7.49 12.04 -48.86 -0.59 -8.08 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.46 7.49 -2.38 -0.02 0.44 16 37 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.20 2.74 7.66 -2.91 -0.02 2.72 16 40 H 0.10 1.61 6.10 -2.39 -0.01 1.60 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.04 1.59 7.62 -2.38 -0.02 1.57 16 47 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 48 H 0.37 14.89 5.60 -92.70 -0.52 14.37 16 49 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.07 1.88 7.86 -2.39 -0.02 1.86 16 Total: -1.00 -70.25 399.27 3.93 -66.32 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.35 Total: 25.11 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.42 Total: -3.52 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -4.24 Total: -120.23 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.50 Total: -13.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Total: -70.25 3.93 -66.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992822139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.668 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds