Wall clock time and date at job start Wed Apr 1 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47418 * 2 1 4 4 N 1.29933 * 125.37873 * 89.99544 * 3 2 1 5 5 C 1.36068 * 108.47833 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44824 * 180.02562 * 5 4 3 7 7 O 1.21619 * 119.99958 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00347 * 0.02562 * 6 5 4 9 9 C 1.47760 * 125.81907 * 0.03105 * 8 6 5 10 10 C 1.55970 * 104.11528 * 205.91784 * 9 8 6 11 11 H 1.09005 * 112.98292 * 199.65364 * 10 9 8 12 12 C 1.52970 * 106.42084 * 74.84753 * 10 9 8 13 13 C 1.52634 * 110.89218 * 198.09006 * 12 10 9 14 14 C 1.53273 * 108.56618 * 62.07936 * 13 12 10 15 15 C 1.52837 * 108.34065 * 296.59817 * 14 13 12 16 16 H 1.08996 * 109.07639 * 179.73690 * 15 14 13 17 17 N 1.46503 * 109.07879 * 298.77362 * 15 14 13 18 18 C 1.36938 * 119.99968 * 275.00543 * 17 15 14 19 19 H 1.07999 * 119.99998 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99736 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99818 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47232 * 89.99796 * 22 20 18 24 24 H 1.48502 * 109.47231 * 210.00041 * 22 20 18 25 25 H 1.48505 * 109.46882 * 329.99983 * 22 20 18 26 26 C 1.51029 * 111.47382 * 59.22116 * 15 14 13 27 27 H 1.08999 * 109.33000 * 185.64191 * 26 15 14 28 28 C 1.47608 * 125.82355 * 179.97438 * 8 6 5 29 29 C 1.36089 * 107.10404 * 0.27031 * 5 4 3 30 30 C 1.50693 * 126.52750 * 179.73866 * 29 5 4 31 31 O 1.34053 * 125.37879 * 270.04181 * 3 2 1 32 32 H 1.09002 * 109.46984 * 300.00190 * 1 2 3 33 33 H 1.09003 * 109.46859 * 59.99984 * 1 2 3 34 34 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46984 * 239.99810 * 2 1 3 36 36 H 1.09003 * 109.46859 * 120.00016 * 2 1 3 37 37 H 1.08997 * 110.49726 * 324.57570 * 9 8 6 38 38 H 1.09002 * 110.49716 * 87.25950 * 9 8 6 39 39 H 1.09002 * 109.20073 * 318.42281 * 12 10 9 40 40 H 1.09002 * 109.20151 * 77.71249 * 12 10 9 41 41 H 1.08999 * 109.59011 * 302.37155 * 13 12 10 42 42 H 1.09008 * 109.65200 * 181.82279 * 13 12 10 43 43 H 1.09002 * 109.69828 * 176.87146 * 14 13 12 44 44 H 1.09000 * 109.69378 * 56.31720 * 14 13 12 45 45 H 0.96993 * 119.99551 * 95.00109 * 17 15 14 46 46 H 0.97008 * 119.99679 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.07613 * 60.25328 * 28 8 6 48 48 H 1.08997 * 110.08178 * 298.69402 * 28 8 6 49 49 H 1.08994 * 109.47326 * 89.99620 * 30 29 5 50 50 H 1.09008 * 109.47158 * 209.99572 * 30 29 5 51 51 H 1.08998 * 109.47327 * 329.99154 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2831 2.1300 1.0594 5 6 2.7167 3.3576 0.6638 6 6 3.1112 4.4726 1.5438 7 8 3.4825 5.5256 1.0618 8 7 3.0605 4.3250 2.8825 9 6 2.6322 3.1080 3.6027 10 6 2.1199 3.6395 4.9766 11 1 2.0860 2.8678 5.7457 12 6 0.7586 4.2845 4.7104 13 6 0.3643 5.2154 5.8539 14 6 1.3992 6.3423 5.9447 15 6 2.7526 5.7253 6.2962 16 1 3.4994 6.5167 6.3593 17 7 2.6515 5.0579 7.5965 18 6 2.8218 5.7763 8.7498 19 1 3.0311 6.8347 8.7009 20 6 2.7255 5.1440 9.9818 21 7 2.4699 3.8543 10.0414 22 14 2.9585 6.1237 11.5551 23 1 1.6476 6.6569 12.0050 24 1 3.5221 5.2418 12.6086 25 1 3.8912 7.2514 11.3024 26 6 3.1872 4.7179 5.2582 27 1 4.1024 4.2284 5.5915 28 6 3.4243 5.3512 3.8792 29 6 2.7122 3.3643 -0.6970 30 6 3.1090 4.5118 -1.5896 31 8 2.2904 2.1527 -1.0930 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.8281 2.6081 3.0629 38 1 3.4755 2.4322 3.7452 39 1 0.8081 4.8567 3.7840 40 1 0.0055 3.5031 4.6083 41 1 0.3476 4.6574 6.7902 42 1 -0.6213 5.6383 5.6592 43 1 1.1053 7.0495 6.7204 44 1 1.4677 6.8563 4.9860 45 1 2.4638 4.1073 7.6404 46 1 2.4029 3.4124 10.9024 47 1 2.7925 6.2311 3.7581 48 1 4.4735 5.6251 3.7685 49 1 4.1747 4.4494 -1.8096 50 1 2.5425 4.4614 -2.5196 51 1 2.8967 5.4545 -1.0855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992832313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:46 Heat of formation + Delta-G solvation = -6.976173 kcal Electronic energy + Delta-G solvation = -31829.833214 eV Core-core repulsion = 27730.683924 eV Total energy + Delta-G solvation = -4099.149290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.67930 -40.44706 -38.52313 -35.62409 -35.18978 -34.37149 -33.28081 -31.90647 -31.41678 -30.54514 -29.31479 -27.49290 -26.38132 -25.26013 -24.21704 -23.26331 -22.44665 -21.76550 -21.36003 -20.81524 -19.47146 -18.11593 -17.35508 -17.24464 -17.09344 -16.18504 -15.87151 -15.52627 -15.06591 -14.85319 -14.62392 -14.47991 -13.95771 -13.79656 -13.64321 -13.56745 -13.41044 -13.25612 -12.94959 -12.80486 -12.74553 -12.51209 -12.32920 -12.13561 -11.63384 -11.59599 -11.54909 -11.46283 -11.25286 -11.24567 -10.91746 -10.83792 -10.71239 -10.62047 -10.16130 -10.10065 -9.95269 -9.67929 -9.51489 -9.39107 -9.04711 -8.82770 -8.44405 -6.92623 -5.74722 -3.02314 0.89264 1.82284 2.20625 2.94419 3.24195 3.44790 3.50570 3.51551 3.59533 4.32979 4.41849 4.59312 4.63459 4.70676 4.77023 4.86584 4.95958 5.00231 5.11294 5.18414 5.22131 5.35760 5.45309 5.48095 5.51071 5.59830 5.61821 5.65787 5.73766 5.76281 5.78939 5.80311 5.82695 5.89361 5.99223 6.02155 6.13155 6.24111 6.25554 6.30827 6.41109 6.47245 6.56556 6.59335 6.87604 6.91835 7.08259 7.15501 7.27173 7.57232 7.73110 8.12377 8.44203 9.55852 10.13250 10.48947 11.47979 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002589 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.945574 B =10813.944832 C =11650.500286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.191 3.809 4 N -0.450 5.450 5 C -0.066 4.066 6 C 0.612 3.388 7 O -0.543 6.543 8 N -0.595 5.595 9 C 0.101 3.899 10 C -0.090 4.090 11 H 0.103 0.897 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.189 3.811 16 H 0.047 0.953 17 N -0.719 5.719 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.097 4.097 27 H 0.080 0.920 28 C 0.117 3.883 29 C 0.035 3.965 30 C -0.075 4.075 31 O -0.198 6.198 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -6.894 -24.400 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.018 4.018 4 N -0.179 5.179 5 C -0.186 4.186 6 C 0.400 3.600 7 O -0.422 6.422 8 N -0.326 5.326 9 C -0.021 4.021 10 C -0.109 4.109 11 H 0.121 0.879 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.174 4.174 15 C 0.078 3.922 16 H 0.065 0.935 17 N -0.360 5.360 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.117 4.117 27 H 0.098 0.902 28 C -0.005 4.005 29 C -0.021 4.021 30 C -0.131 4.131 31 O -0.085 6.085 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.534 -6.418 -23.971 24.944 hybrid contribution 0.152 0.289 0.350 0.479 sum -2.381 -6.130 -23.621 24.519 Atomic orbital electron populations 1.21799 0.92906 1.03139 1.03096 1.20112 0.96982 0.83881 1.05388 1.26324 1.00184 0.96923 0.78330 1.70868 1.15213 1.02552 1.29273 1.21428 1.10721 0.94400 0.92070 1.16290 0.78183 0.85077 0.80454 1.90770 1.49399 1.27518 1.74547 1.48422 1.63792 1.16364 1.04058 1.22994 1.00217 0.86327 0.92570 1.22475 0.94981 0.97897 0.95573 0.87931 1.21419 0.95512 0.98541 0.98724 1.21383 0.97213 0.97176 0.99159 1.22179 0.98112 0.97732 0.99388 1.19575 0.94196 0.92846 0.85535 0.93476 1.42383 1.85383 1.09035 0.99227 1.19237 1.40196 0.92632 0.84474 0.91262 1.24697 1.02973 0.95823 0.97459 1.69653 1.56179 1.08286 1.24071 0.86231 0.77619 0.78838 0.83754 1.21854 1.21898 1.20851 1.21833 0.99317 0.97219 0.93292 0.90197 1.22053 1.00384 0.91304 0.86790 1.23687 0.98319 0.85604 0.94486 1.20578 1.02481 0.92418 0.97623 1.84311 1.64050 1.22112 1.38060 0.91495 0.92236 0.90735 0.88861 0.87280 0.88361 0.91700 0.92826 0.92855 0.90267 0.93645 0.91953 0.93850 0.78180 0.93615 0.90717 0.91406 0.89105 0.90265 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.47 16 2 C -0.03 -0.16 6.56 -27.89 -0.18 -0.34 16 3 C 0.19 1.97 7.56 -13.09 -0.10 1.87 16 4 N -0.45 -5.71 8.42 -7.66 -0.06 -5.77 16 5 C -0.07 -0.92 6.82 -83.02 -0.57 -1.48 16 6 C 0.61 9.56 7.85 -12.52 -0.10 9.46 16 7 O -0.54 -9.28 15.15 5.26 0.08 -9.20 16 8 N -0.60 -8.98 2.78 -170.82 -0.47 -9.46 16 9 C 0.10 1.42 5.48 -1.76 -0.01 1.41 16 10 C -0.09 -1.37 3.35 -88.35 -0.30 -1.67 16 11 H 0.10 1.64 7.87 -51.93 -0.41 1.23 16 12 C -0.10 -1.58 4.82 -26.93 -0.13 -1.71 16 13 C -0.11 -1.91 5.84 -26.78 -0.16 -2.07 16 14 C -0.13 -2.39 5.46 -26.67 -0.15 -2.54 16 15 C 0.19 3.62 2.52 -69.00 -0.17 3.45 16 16 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 17 N -0.72 -17.09 4.18 -54.47 -0.23 -17.31 16 18 C -0.23 -6.30 9.91 -15.06 -0.15 -6.45 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 22 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 C -0.10 -1.59 2.31 -90.61 -0.21 -1.80 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 28 C 0.12 1.80 5.77 -3.13 -0.02 1.78 16 29 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 30 C -0.07 -0.66 9.87 36.00 0.36 -0.30 16 31 O -0.20 -2.14 10.73 6.49 0.07 -2.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.36 5.95 -51.93 -0.31 1.05 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.83 7.01 -51.93 -0.36 0.46 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 42 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 45 H 0.38 9.65 7.12 -40.82 -0.29 9.36 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.07 1.17 6.34 -51.93 -0.33 0.85 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 51 H 0.11 1.15 6.49 -51.93 -0.34 0.81 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -31.61 396.96 -9.03 -40.64 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.23 Total: 7.96 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.87 Total: -1.19 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.04 Total: -59.32 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.15 Total: -11.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.61 -9.03 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.667 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds