Wall clock time and date at job start Wed Apr 1 2020 04:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47418 * 2 1 4 4 N 1.29933 * 125.37873 * 89.99544 * 3 2 1 5 5 C 1.36068 * 108.47833 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44824 * 180.02562 * 5 4 3 7 7 O 1.21619 * 119.99958 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00347 * 0.02562 * 6 5 4 9 9 C 1.47760 * 125.81907 * 0.03105 * 8 6 5 10 10 C 1.55970 * 104.11528 * 205.91784 * 9 8 6 11 11 H 1.09005 * 112.98292 * 199.65364 * 10 9 8 12 12 C 1.52970 * 106.42084 * 74.84753 * 10 9 8 13 13 C 1.52634 * 110.89218 * 198.09006 * 12 10 9 14 14 C 1.53273 * 108.56618 * 62.07936 * 13 12 10 15 15 C 1.52837 * 108.34065 * 296.59817 * 14 13 12 16 16 H 1.08996 * 109.07639 * 179.73690 * 15 14 13 17 17 N 1.46503 * 109.07879 * 298.77362 * 15 14 13 18 18 C 1.36938 * 119.99968 * 275.00543 * 17 15 14 19 19 H 1.07999 * 119.99998 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99736 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99818 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47232 * 89.99796 * 22 20 18 24 24 H 1.48502 * 109.47231 * 210.00041 * 22 20 18 25 25 H 1.48505 * 109.46882 * 329.99983 * 22 20 18 26 26 C 1.51029 * 111.47382 * 59.22116 * 15 14 13 27 27 H 1.08999 * 109.33000 * 185.64191 * 26 15 14 28 28 C 1.47608 * 125.82355 * 179.97438 * 8 6 5 29 29 C 1.36089 * 107.10404 * 0.27031 * 5 4 3 30 30 C 1.50693 * 126.52750 * 179.73866 * 29 5 4 31 31 O 1.34053 * 125.37879 * 270.04181 * 3 2 1 32 32 H 1.09002 * 109.46984 * 300.00190 * 1 2 3 33 33 H 1.09003 * 109.46859 * 59.99984 * 1 2 3 34 34 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46984 * 239.99810 * 2 1 3 36 36 H 1.09003 * 109.46859 * 120.00016 * 2 1 3 37 37 H 1.08997 * 110.49726 * 324.57570 * 9 8 6 38 38 H 1.09002 * 110.49716 * 87.25950 * 9 8 6 39 39 H 1.09002 * 109.20073 * 318.42281 * 12 10 9 40 40 H 1.09002 * 109.20151 * 77.71249 * 12 10 9 41 41 H 1.08999 * 109.59011 * 302.37155 * 13 12 10 42 42 H 1.09008 * 109.65200 * 181.82279 * 13 12 10 43 43 H 1.09002 * 109.69828 * 176.87146 * 14 13 12 44 44 H 1.09000 * 109.69378 * 56.31720 * 14 13 12 45 45 H 0.96993 * 119.99551 * 95.00109 * 17 15 14 46 46 H 0.97008 * 119.99679 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.07613 * 60.25328 * 28 8 6 48 48 H 1.08997 * 110.08178 * 298.69402 * 28 8 6 49 49 H 1.08994 * 109.47326 * 89.99620 * 30 29 5 50 50 H 1.09008 * 109.47158 * 209.99572 * 30 29 5 51 51 H 1.08998 * 109.47327 * 329.99154 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2831 2.1300 1.0594 5 6 2.7167 3.3576 0.6638 6 6 3.1112 4.4726 1.5438 7 8 3.4825 5.5256 1.0618 8 7 3.0605 4.3250 2.8825 9 6 2.6322 3.1080 3.6027 10 6 2.1199 3.6395 4.9766 11 1 2.0860 2.8678 5.7457 12 6 0.7586 4.2845 4.7104 13 6 0.3643 5.2154 5.8539 14 6 1.3992 6.3423 5.9447 15 6 2.7526 5.7253 6.2962 16 1 3.4994 6.5167 6.3593 17 7 2.6515 5.0579 7.5965 18 6 2.8218 5.7763 8.7498 19 1 3.0311 6.8347 8.7009 20 6 2.7255 5.1440 9.9818 21 7 2.4699 3.8543 10.0414 22 14 2.9585 6.1237 11.5551 23 1 1.6476 6.6569 12.0050 24 1 3.5221 5.2418 12.6086 25 1 3.8912 7.2514 11.3024 26 6 3.1872 4.7179 5.2582 27 1 4.1024 4.2284 5.5915 28 6 3.4243 5.3512 3.8792 29 6 2.7122 3.3643 -0.6970 30 6 3.1090 4.5118 -1.5896 31 8 2.2904 2.1527 -1.0930 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.8281 2.6081 3.0629 38 1 3.4755 2.4322 3.7452 39 1 0.8081 4.8567 3.7840 40 1 0.0055 3.5031 4.6083 41 1 0.3476 4.6574 6.7902 42 1 -0.6213 5.6383 5.6592 43 1 1.1053 7.0495 6.7204 44 1 1.4677 6.8563 4.9860 45 1 2.4638 4.1073 7.6404 46 1 2.4029 3.4124 10.9024 47 1 2.7925 6.2311 3.7581 48 1 4.4735 5.6251 3.7685 49 1 4.1747 4.4494 -1.8096 50 1 2.5425 4.4614 -2.5196 51 1 2.8967 5.4545 -1.0855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992832313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:45 Heat of formation + Delta-G solvation = -26.001713 kcal Electronic energy + Delta-G solvation = -31830.658223 eV Core-core repulsion = 27730.683924 eV Total energy + Delta-G solvation = -4099.974299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.53162 -41.74541 -39.80363 -37.04401 -36.09492 -35.07846 -34.98231 -33.10984 -32.60294 -31.86000 -30.96777 -28.46159 -27.71028 -26.41709 -25.52796 -24.49294 -23.56287 -23.05423 -22.43149 -22.04592 -20.49627 -19.47230 -19.15284 -18.51886 -18.09638 -17.19779 -17.15312 -16.54727 -16.48010 -16.14391 -15.73295 -15.37514 -15.32283 -15.25571 -15.06269 -14.78641 -14.41206 -14.19140 -14.11355 -13.88997 -13.81221 -13.51670 -13.33192 -13.22198 -12.98333 -12.75612 -12.70607 -12.65065 -12.57134 -12.51014 -12.31427 -12.20936 -12.08213 -12.03347 -11.80940 -11.70684 -11.33562 -11.18098 -11.12464 -10.84803 -10.67014 -9.98867 -9.59325 -8.93624 -7.89049 -5.15181 -0.01711 0.92390 1.40674 1.49242 1.49534 1.57658 1.82102 2.14431 2.59135 2.79100 3.34774 3.43795 3.48821 3.55165 3.65977 3.80634 4.07968 4.11712 4.19634 4.23890 4.26211 4.26371 4.36424 4.37349 4.43293 4.48500 4.50956 4.55343 4.63150 4.64635 4.79880 4.83044 4.86379 4.88173 4.90910 4.97275 5.00808 5.05327 5.06414 5.10758 5.13952 5.21468 5.29390 5.36665 5.40219 5.44776 5.55104 5.61653 5.68966 6.31522 6.34077 6.46979 6.95249 7.40755 8.16610 8.41857 9.34221 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002589 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.945574 B =10813.944832 C =11650.500286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C 0.199 3.801 4 N -0.473 5.473 5 C -0.099 4.099 6 C 0.609 3.391 7 O -0.564 6.564 8 N -0.598 5.598 9 C 0.115 3.885 10 C -0.088 4.088 11 H 0.094 0.906 12 C -0.094 4.094 13 C -0.107 4.107 14 C -0.127 4.127 15 C 0.187 3.813 16 H 0.039 0.961 17 N -0.726 5.726 18 C -0.231 4.231 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.088 4.088 27 H 0.069 0.931 28 C 0.125 3.875 29 C 0.044 3.956 30 C -0.073 4.073 31 O -0.196 6.196 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.376 0.624 46 H 0.249 0.751 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.106 0.894 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -7.467 -26.596 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 C -0.010 4.010 4 N -0.203 5.203 5 C -0.218 4.218 6 C 0.398 3.602 7 O -0.445 6.445 8 N -0.329 5.329 9 C -0.007 4.007 10 C -0.107 4.107 11 H 0.112 0.888 12 C -0.131 4.131 13 C -0.144 4.144 14 C -0.167 4.167 15 C 0.079 3.921 16 H 0.057 0.943 17 N -0.366 5.366 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.218 1.218 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.108 4.108 27 H 0.087 0.913 28 C 0.002 3.998 29 C -0.013 4.013 30 C -0.129 4.129 31 O -0.083 6.083 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.208 0.792 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.947 -6.960 -26.193 27.262 hybrid contribution 0.274 0.460 0.920 1.064 sum -2.673 -6.500 -25.273 26.232 Atomic orbital electron populations 1.21785 0.92328 1.04304 1.02166 1.20409 0.97277 0.81556 1.07067 1.27203 0.98362 0.97827 0.77623 1.70804 1.16528 1.02508 1.30432 1.21289 1.13125 0.94672 0.92705 1.16569 0.77677 0.85402 0.80509 1.90748 1.50390 1.28488 1.74879 1.48437 1.63923 1.16399 1.04107 1.22880 1.00411 0.85917 0.91452 1.22419 0.94841 0.97309 0.96117 0.88786 1.21323 0.95651 0.98486 0.97689 1.21306 0.97822 0.96895 0.98423 1.22062 0.97223 0.97672 0.99759 1.19712 0.94825 0.93104 0.84486 0.94265 1.42493 1.85270 1.08654 1.00198 1.19561 1.38285 0.92872 0.85593 0.91078 1.25402 1.04074 0.96768 1.00292 1.69795 1.58115 1.09651 1.24178 0.85267 0.77448 0.77652 0.80166 1.21805 1.22454 1.19809 1.21615 0.99230 0.96832 0.93147 0.91259 1.21888 1.00508 0.91260 0.86128 1.24118 0.96739 0.86253 0.94219 1.20670 1.03637 0.90581 0.98054 1.84352 1.63955 1.21835 1.38175 0.93161 0.92399 0.88537 0.86309 0.86430 0.87685 0.91502 0.92593 0.91362 0.93412 0.92152 0.93852 0.91686 0.79153 0.94233 0.90818 0.91253 0.87854 0.87541 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 71.98 0.71 -0.56 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.20 3.70 7.56 88.39 0.67 4.36 16 4 N -0.47 -11.40 8.42 -293.04 -2.47 -13.87 16 5 C -0.10 -2.64 6.82 40.41 0.28 -2.37 16 6 C 0.61 18.65 7.85 86.66 0.68 19.33 16 7 O -0.56 -19.05 15.15 -4.09 -0.06 -19.11 16 8 N -0.60 -17.63 2.78 -812.60 -2.26 -19.89 16 9 C 0.12 3.14 5.48 87.17 0.48 3.62 16 10 C -0.09 -2.64 3.35 -9.33 -0.03 -2.67 16 11 H 0.09 3.03 7.87 -2.38 -0.02 3.01 16 12 C -0.09 -2.74 4.82 30.46 0.15 -2.59 16 13 C -0.11 -3.60 5.84 30.56 0.18 -3.42 16 14 C -0.13 -4.51 5.46 30.63 0.17 -4.34 16 15 C 0.19 7.25 2.52 44.29 0.11 7.36 16 16 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 17 N -0.73 -35.17 4.18 -326.26 -1.36 -36.53 16 18 C -0.23 -12.58 9.91 84.03 0.83 -11.75 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 21 N -0.97 -58.11 13.06 21.65 0.28 -57.83 16 22 Si 0.96 46.19 29.55 68.60 2.03 48.21 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.09 -2.91 2.31 -10.79 -0.02 -2.93 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 C 0.12 3.76 5.77 86.37 0.50 4.26 16 29 C 0.04 0.95 7.44 25.18 0.19 1.14 16 30 C -0.07 -1.16 9.87 71.23 0.70 -0.46 16 31 O -0.20 -3.80 10.73 0.30 0.00 -3.80 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 2.78 5.95 -2.39 -0.01 2.77 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.63 7.01 -2.39 -0.02 1.62 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.93 7.39 -2.39 -0.02 1.91 16 42 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.03 6.61 -2.39 -0.02 2.02 16 45 H 0.38 19.40 7.12 -92.71 -0.66 18.74 16 46 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 47 H 0.07 2.25 6.34 -2.39 -0.02 2.23 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 50 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 51 H 0.10 1.91 6.49 -2.39 -0.02 1.89 16 Total: -1.00 -68.47 396.96 2.69 -65.78 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.28 Total: 31.76 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.25 Total: 5.28 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -5.81 Total: -128.12 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.06 Total: -22.91 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -68.47 2.69 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992832313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.775 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds